Wall clock time and date at job start Mon Mar 30 2020 02:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 S 1.81398 * 109.47074 * 119.99898 * 2 1 3 14 14 C 1.81401 * 102.99938 * 294.99918 * 13 2 1 15 15 C 1.53170 * 109.54603 * 294.82333 * 14 13 2 16 16 C 1.53106 * 109.16088 * 183.23822 * 15 14 13 17 17 O 1.42900 * 109.48340 * 57.47347 * 16 15 14 18 18 C 1.42903 * 114.10073 * 298.88991 * 17 16 15 19 19 C 1.53096 * 109.41270 * 61.15964 * 18 17 16 20 20 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 22 22 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 23 23 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 24 24 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 25 25 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 26 26 H 1.09000 * 109.54169 * 54.99832 * 14 13 2 27 27 H 1.09005 * 109.52312 * 303.05919 * 15 14 13 28 28 H 1.09001 * 109.52262 * 63.24167 * 15 14 13 29 29 H 1.08994 * 109.40662 * 297.49643 * 16 15 14 30 30 H 1.09000 * 109.48426 * 177.49796 * 16 15 14 31 31 H 1.08999 * 109.47843 * 301.17691 * 18 17 16 32 32 H 1.08998 * 109.49137 * 181.14399 * 18 17 16 33 33 H 1.09004 * 109.51943 * 182.48968 * 19 18 17 34 34 H 1.08990 * 109.57639 * 62.32926 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 16 2.1346 -0.8551 1.4811 14 6 1.5664 0.2154 2.8309 15 6 2.2742 1.5709 2.7425 16 6 1.8496 2.4379 3.9308 17 8 2.1585 1.7597 5.1501 18 6 1.4865 0.5084 5.3083 19 6 1.8983 -0.4368 4.1765 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.6055 -0.2619 -2.1370 24 1 1.7517 -1.7715 -1.2055 25 1 6.0246 -1.4984 -3.1541 26 1 0.4890 0.3608 2.7520 27 1 3.3535 1.4207 2.7700 28 1 1.9980 2.0660 1.8115 29 1 0.7766 2.6225 3.8794 30 1 2.3841 3.3873 3.8976 31 1 0.4088 0.6679 5.2748 32 1 1.7593 0.0678 6.2672 33 1 1.3534 -1.3762 4.2702 34 1 2.9694 -0.6298 4.2334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308285174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:44 Heat of formation + Delta-G solvation = -70.604766 kcal Electronic energy + Delta-G solvation = -14379.631557 eV Core-core repulsion = 12016.890334 eV Total energy + Delta-G solvation = -2362.741223 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.14682 -34.71970 -33.61506 -32.06433 -31.10460 -28.08113 -25.02668 -23.67921 -23.03318 -20.60164 -20.08975 -16.71441 -16.56699 -16.01700 -15.45527 -15.05403 -14.66930 -14.46000 -13.83073 -13.55030 -12.90947 -12.63464 -12.33528 -12.30448 -11.86781 -11.70376 -11.32005 -11.07041 -11.00047 -10.82796 -10.57087 -10.22568 -9.96216 -9.70584 -9.43953 -9.24580 -8.92792 -8.51332 -6.92771 -6.00765 -3.98343 2.27433 3.28040 3.31332 3.38544 3.40132 3.84965 4.46050 4.70783 4.77735 4.98930 5.17970 5.19647 5.32556 5.39047 5.44322 5.52342 5.61235 5.61835 5.65079 5.81573 5.86863 6.00993 6.15085 6.23464 6.35097 6.41695 6.54179 7.04374 7.14118 7.20566 7.74348 8.55338 9.07194 9.60156 11.12245 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043277 B = 0.006512 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.847001 B = 4298.579296 C = 4494.784462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 H 0.079 0.921 4 C 0.003 3.997 5 C -0.514 4.514 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.267 1.267 12 H -0.288 1.288 13 S -0.223 6.223 14 C -0.074 4.074 15 C -0.149 4.149 16 C 0.064 3.936 17 O -0.383 6.383 18 C 0.067 3.933 19 C -0.133 4.133 20 H 0.061 0.939 21 H 0.043 0.957 22 H 0.059 0.941 23 H 0.030 0.970 24 H 0.019 0.981 25 H 0.262 0.738 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.869 4.178 11.621 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 H 0.097 0.903 4 C -0.035 4.035 5 C -0.552 4.552 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.192 1.192 12 H -0.214 1.214 13 S 0.008 5.992 14 C -0.202 4.202 15 C -0.188 4.188 16 C -0.014 4.014 17 O -0.302 6.302 18 C -0.012 4.012 19 C -0.172 4.172 20 H 0.080 0.920 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.048 0.952 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.997 3.211 11.672 15.700 hybrid contribution -1.248 0.444 -1.232 1.809 sum -11.246 3.655 10.440 15.774 Atomic orbital electron populations 1.22149 0.95455 1.02205 1.00809 1.23140 0.95632 1.01760 0.96087 0.90252 1.19487 0.98104 0.95296 0.90613 1.21122 0.89177 1.35239 1.09635 0.90047 1.24978 0.94695 0.95876 0.97716 1.69907 1.06486 1.45456 1.32080 0.86876 0.80402 0.80774 0.81817 1.20275 1.19182 1.21359 1.87233 1.76043 1.36420 0.99464 1.23164 1.01659 0.97865 0.97553 1.22506 1.02622 0.94914 0.98805 1.22619 0.99471 0.95366 0.83957 1.87914 1.69508 1.33702 1.39097 1.22578 0.95940 0.84235 0.98424 1.21982 1.03684 0.98963 0.92584 0.91990 0.93786 0.92238 0.95226 0.96227 0.92796 0.90477 0.89554 0.90688 0.93548 0.88749 0.93384 0.88694 0.90281 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.10 37.16 0.34 -1.97 16 2 C -0.04 -0.74 2.56 -26.73 -0.07 -0.80 16 3 H 0.08 1.57 7.03 -51.92 -0.37 1.20 16 4 C 0.00 0.08 3.51 -27.88 -0.10 -0.02 16 5 C -0.51 -14.55 9.09 -34.44 -0.31 -14.86 16 6 H 0.08 2.51 7.85 -52.49 -0.41 2.09 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 9 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 S -0.22 -4.30 19.88 -107.50 -2.14 -6.44 16 14 C -0.07 -1.07 2.51 -26.55 -0.07 -1.14 16 15 C -0.15 -2.10 5.29 -26.59 -0.14 -2.24 16 16 C 0.06 0.76 6.84 37.21 0.25 1.01 16 17 O -0.38 -5.03 10.77 -35.23 -0.38 -5.41 16 18 C 0.07 0.73 6.84 37.21 0.25 0.99 16 19 C -0.13 -1.71 5.43 -26.59 -0.14 -1.85 16 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.04 0.60 6.80 -51.93 -0.35 0.25 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 24 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 26 H 0.08 1.04 6.94 -51.93 -0.36 0.68 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.07 1.06 6.96 -51.93 -0.36 0.70 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 281.39 15.07 4.24 4.24 Total: -1.00 -30.99 281.39 -7.84 -38.83 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.59 Total: -2.16 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -0.08 Total: -18.99 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.77 Total: -27.17 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.38 Total: -5.41 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Atomic # 16 Polarization: -4.30 SS G_CDS: -2.14 Total: -6.44 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.99 -7.84 -38.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308285174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.776 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds