Wall clock time and date at job start Mon Mar 30 2020 02:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 S 1.81398 * 109.47074 * 119.99898 * 2 1 3 14 14 C 1.81401 * 102.99938 * 294.99918 * 13 2 1 15 15 C 1.53170 * 109.54603 * 294.82333 * 14 13 2 16 16 C 1.53106 * 109.16088 * 183.23822 * 15 14 13 17 17 O 1.42900 * 109.48340 * 57.47347 * 16 15 14 18 18 C 1.42903 * 114.10073 * 298.88991 * 17 16 15 19 19 C 1.53096 * 109.41270 * 61.15964 * 18 17 16 20 20 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 22 22 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 23 23 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 24 24 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 25 25 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 26 26 H 1.09000 * 109.54169 * 54.99832 * 14 13 2 27 27 H 1.09005 * 109.52312 * 303.05919 * 15 14 13 28 28 H 1.09001 * 109.52262 * 63.24167 * 15 14 13 29 29 H 1.08994 * 109.40662 * 297.49643 * 16 15 14 30 30 H 1.09000 * 109.48426 * 177.49796 * 16 15 14 31 31 H 1.08999 * 109.47843 * 301.17691 * 18 17 16 32 32 H 1.08998 * 109.49137 * 181.14399 * 18 17 16 33 33 H 1.09004 * 109.51943 * 182.48968 * 19 18 17 34 34 H 1.08990 * 109.57639 * 62.32926 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 16 2.1346 -0.8551 1.4811 14 6 1.5664 0.2154 2.8309 15 6 2.2742 1.5709 2.7425 16 6 1.8496 2.4379 3.9308 17 8 2.1585 1.7597 5.1501 18 6 1.4865 0.5084 5.3083 19 6 1.8983 -0.4368 4.1765 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.6055 -0.2619 -2.1370 24 1 1.7517 -1.7715 -1.2055 25 1 6.0246 -1.4984 -3.1541 26 1 0.4890 0.3608 2.7520 27 1 3.3535 1.4207 2.7700 28 1 1.9980 2.0660 1.8115 29 1 0.7766 2.6225 3.8794 30 1 2.3841 3.3873 3.8976 31 1 0.4088 0.6679 5.2748 32 1 1.7593 0.0678 6.2672 33 1 1.3534 -1.3762 4.2702 34 1 2.9694 -0.6298 4.2334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308285174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:44 Heat of formation + Delta-G solvation = -89.886997 kcal Electronic energy + Delta-G solvation = -14380.467697 eV Core-core repulsion = 12016.890334 eV Total energy + Delta-G solvation = -2363.577363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13955 -36.46540 -34.76328 -34.08618 -32.09851 -29.91174 -26.05989 -25.00891 -24.55468 -22.17796 -21.30471 -18.89972 -17.72671 -16.96871 -16.85516 -16.43602 -16.24346 -15.68347 -15.12489 -14.89013 -14.63145 -14.16428 -13.95516 -13.44810 -13.37009 -13.11143 -12.68300 -12.46494 -12.35236 -12.18267 -11.91601 -11.76511 -11.55120 -11.41019 -11.23376 -10.80710 -10.64297 -10.24186 -8.47770 -8.24510 -6.28210 0.88101 1.34649 1.35578 1.46378 1.86522 2.36025 2.96012 3.09480 3.65081 3.67470 3.97746 4.03193 4.13031 4.19568 4.26931 4.42203 4.48473 4.54023 4.64767 4.74058 4.80155 4.86738 4.92257 5.04107 5.06436 5.08020 5.19934 5.24200 5.37277 5.62616 6.23710 6.30733 6.78553 7.33668 8.91049 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043277 B = 0.006512 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.847001 B = 4298.579296 C = 4494.784462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 H 0.070 0.930 4 C 0.005 3.995 5 C -0.515 4.515 6 H 0.038 0.962 7 C 0.003 3.997 8 N -0.952 5.952 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.242 1.242 12 H -0.284 1.284 13 S -0.299 6.299 14 C -0.051 4.051 15 C -0.148 4.148 16 C 0.069 3.931 17 O -0.401 6.401 18 C 0.069 3.931 19 C -0.132 4.132 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.018 0.982 25 H 0.264 0.736 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 4.494 12.163 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 H 0.088 0.912 4 C -0.033 4.033 5 C -0.553 4.553 6 H 0.056 0.944 7 C -0.193 4.193 8 N -0.593 5.593 9 Si 0.768 3.232 10 H -0.198 1.198 11 H -0.166 1.166 12 H -0.210 1.210 13 S -0.068 6.068 14 C -0.179 4.179 15 C -0.188 4.188 16 C -0.009 4.009 17 O -0.320 6.320 18 C -0.009 4.009 19 C -0.171 4.171 20 H 0.083 0.917 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.057 0.943 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.082 3.536 12.220 18.248 hybrid contribution -0.223 0.395 -1.278 1.356 sum -13.306 3.931 10.942 17.670 Atomic orbital electron populations 1.22062 0.91752 1.03002 1.02774 1.22983 0.98437 1.00203 0.94073 0.91203 1.19413 0.94817 0.95817 0.93248 1.21372 0.91817 1.33968 1.08170 0.94383 1.25957 0.95555 0.97124 1.00686 1.70075 1.08556 1.47302 1.33372 0.85740 0.79953 0.79268 0.78190 1.19823 1.16551 1.20988 1.87402 1.77811 1.39022 1.02597 1.23213 1.02520 0.96610 0.95595 1.22466 1.00765 0.95374 1.00181 1.22669 1.01054 0.94965 0.82220 1.87905 1.70293 1.34495 1.39318 1.22733 0.97119 0.82906 0.98165 1.22021 1.02506 1.00158 0.92401 0.91747 0.91283 0.90777 0.94289 0.96389 0.92723 0.88207 0.92627 0.90997 0.91065 0.87609 0.91001 0.86733 0.89117 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.10 71.98 0.65 -3.24 16 2 C -0.03 -1.09 2.56 30.59 0.08 -1.02 16 3 H 0.07 2.77 7.03 -2.39 -0.02 2.75 16 4 C 0.01 0.24 3.51 29.85 0.10 0.35 16 5 C -0.51 -30.04 9.09 25.60 0.23 -29.81 16 6 H 0.04 2.48 7.85 -2.91 -0.02 2.46 16 7 C 0.00 0.18 5.47 84.65 0.46 0.64 16 8 N -0.95 -61.17 13.96 21.45 0.30 -60.88 16 9 Si 0.94 44.93 27.47 68.60 1.88 46.82 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 S -0.30 -11.67 19.88 -56.49 -1.12 -12.79 16 14 C -0.05 -1.41 2.51 30.71 0.08 -1.33 16 15 C -0.15 -4.08 5.29 30.69 0.16 -3.92 16 16 C 0.07 1.46 6.84 72.02 0.49 1.96 16 17 O -0.40 -9.54 10.77 -148.98 -1.60 -11.14 16 18 C 0.07 1.30 6.84 72.01 0.49 1.79 16 19 C -0.13 -3.18 5.43 30.69 0.17 -3.02 16 20 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 21 H 0.07 1.62 6.80 -2.39 -0.02 1.60 16 22 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 23 H 0.04 1.76 7.20 -2.39 -0.02 1.74 16 24 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 25 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 26 H 0.10 2.35 6.94 -2.39 -0.02 2.33 16 27 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.07 2.00 6.96 -2.39 -0.02 1.98 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -69.51 281.39 3.38 -66.13 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.99 Total: 9.45 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 2.93 Total: -37.59 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.30 Total: -60.88 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.60 Total: -11.14 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Atomic # 16 Polarization: -11.67 SS G_CDS: -1.12 Total: -12.79 kcal Total: -69.51 3.38 -66.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308285174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.757 kcal (2) G-P(sol) polarization free energy of solvation -69.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds