Wall clock time and date at job start Mon Mar 30 2020 03:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47272 * 15.41549 * 3 2 1 5 5 C 1.53002 * 109.46693 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46863 * 179.97438 * 5 4 3 7 7 C 1.39685 * 120.00341 * 180.02562 * 6 5 4 8 8 C 1.39337 * 119.94932 * 359.97438 * 7 6 5 9 9 C 1.38478 * 120.42823 * 180.02562 * 8 7 6 10 10 C 1.37688 * 120.32117 * 359.97438 * 9 8 7 11 11 C 1.40752 * 119.89434 * 0.03305 * 10 9 8 12 12 C 1.41411 * 120.20601 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00317 * 24.35956 * 12 11 10 14 14 C 1.39935 * 119.99624 * 204.36087 * 12 11 10 15 15 N 1.30827 * 120.00201 * 17.84631 * 14 12 11 16 16 Si 1.86796 * 119.99610 * 197.84653 * 14 12 11 17 17 H 1.48501 * 109.47546 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47184 * 119.99998 * 16 14 12 19 19 H 1.48498 * 109.47199 * 240.00043 * 16 14 12 20 20 C 1.38275 * 119.95691 * 179.97438 * 7 6 5 21 21 H 1.09004 * 109.46562 * 255.41388 * 3 2 1 22 22 H 1.09000 * 109.47002 * 135.42268 * 3 2 1 23 23 H 1.08993 * 109.47002 * 60.00161 * 4 3 2 24 24 H 1.08998 * 109.47097 * 299.99569 * 4 3 2 25 25 H 1.09002 * 109.47151 * 60.00453 * 5 4 3 26 26 H 1.09002 * 109.47344 * 299.99718 * 5 4 3 27 27 H 0.97003 * 120.00136 * 359.97438 * 6 5 4 28 28 H 1.07999 * 119.78413 * 0.02562 * 8 7 6 29 29 H 1.07997 * 119.84142 * 179.97438 * 9 8 7 30 30 H 1.07997 * 120.05363 * 179.97438 * 10 9 8 31 31 H 0.97003 * 119.99955 * 179.97438 * 15 14 12 32 32 H 1.08008 * 120.15896 * 359.70358 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3897 -0.3834 5 6 4.6487 -1.3890 -0.3828 6 7 5.1377 -2.7205 -0.7493 7 6 6.5111 -2.9662 -0.8160 8 6 7.4152 -1.9441 -0.5342 9 6 8.7788 -2.1766 -0.5978 10 6 9.2564 -3.4219 -0.9401 11 6 8.3553 -4.4641 -1.2276 12 6 8.8385 -5.7454 -1.5803 13 1 9.8236 -6.0566 -1.2655 14 6 8.0403 -6.6102 -2.3374 15 7 7.0212 -6.1397 -3.0094 16 14 8.4300 -8.4364 -2.3885 17 1 9.6243 -8.7114 -1.5500 18 1 7.2710 -9.2046 -1.8670 19 1 8.7047 -8.8449 -3.7894 20 6 6.9716 -4.2234 -1.1616 21 1 2.9711 0.2596 0.9946 22 1 2.9710 0.7328 -0.7213 23 1 2.7555 -1.6486 -1.3779 24 1 2.7557 -2.1218 0.3380 25 1 5.0115 -1.1303 0.6120 26 1 5.0121 -0.6569 -1.1039 27 1 4.5077 -3.4317 -0.9450 28 1 7.0500 -0.9642 -0.2644 29 1 9.4711 -1.3774 -0.3779 30 1 10.3207 -3.5983 -0.9888 31 1 6.4681 -6.7392 -3.5345 32 1 6.2718 -5.0178 -1.3756 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313425140.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:49 Heat of formation + Delta-G solvation = 14.167484 kcal Electronic energy + Delta-G solvation = -14588.123121 eV Core-core repulsion = 12125.906699 eV Total energy + Delta-G solvation = -2462.216423 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60585 -38.08470 -36.83243 -35.30843 -33.81219 -31.28163 -29.97979 -27.08279 -26.77618 -23.42165 -22.25700 -21.57902 -19.11745 -18.30274 -17.52073 -16.61762 -16.42372 -16.41167 -15.78438 -14.91440 -14.88803 -14.47958 -14.38010 -13.97214 -13.66531 -13.56787 -13.18721 -12.78845 -12.68462 -12.47034 -12.43408 -12.25421 -12.01461 -11.66887 -11.45015 -11.23598 -11.01919 -10.38730 -9.18801 -8.58812 -7.81725 -6.27808 1.12429 1.39588 1.40494 1.54525 1.60949 1.78364 1.86502 2.25262 2.83566 2.88598 3.21872 3.92553 4.16360 4.25637 4.27834 4.60171 4.72714 4.80270 4.87695 4.95148 5.06146 5.24169 5.28257 5.29378 5.38367 5.52011 5.67585 6.02802 6.18531 6.27438 6.33600 6.63427 6.65484 7.00119 7.11309 7.16119 7.31880 8.41474 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031415 B = 0.005113 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.080129 B = 5474.520463 C = 6272.435915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.238 3.762 3 C -0.013 4.013 4 C -0.118 4.118 5 C 0.132 3.868 6 N -0.760 5.760 7 C 0.219 3.781 8 C -0.297 4.297 9 C -0.064 4.064 10 C -0.289 4.289 11 C 0.106 3.894 12 C -0.506 4.506 13 H 0.069 0.931 14 C 0.038 3.962 15 N -0.823 5.823 16 Si 0.977 3.023 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.267 1.267 20 C -0.262 4.262 21 H 0.142 0.858 22 H 0.140 0.860 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.391 0.609 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.284 0.716 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.918 7.973 4.133 10.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.078 4.078 3 C -0.054 4.054 4 C -0.157 4.157 5 C 0.008 3.992 6 N -0.392 5.392 7 C 0.118 3.882 8 C -0.319 4.319 9 C -0.082 4.082 10 C -0.310 4.310 11 C 0.104 3.896 12 C -0.536 4.536 13 H 0.087 0.913 14 C -0.176 4.176 15 N -0.449 5.449 16 Si 0.798 3.202 17 H -0.184 1.184 18 H -0.190 1.190 19 H -0.192 1.192 20 C -0.287 4.287 21 H 0.160 0.840 22 H 0.158 0.842 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.224 0.776 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.827 8.142 4.028 11.363 hybrid contribution 0.382 -1.338 -0.403 1.449 sum -6.445 6.804 3.625 10.049 Atomic orbital electron populations 1.81261 1.15374 1.10708 1.11542 1.29861 0.95864 0.91177 0.90925 1.19421 0.78686 0.99040 1.08203 1.21575 0.94220 0.96855 1.03095 1.21274 0.93021 0.84375 1.00502 1.44562 1.02608 1.12928 1.79082 1.17758 0.84303 0.93215 0.92935 1.20297 0.92418 0.98669 1.20559 1.20685 0.95293 0.95568 0.96701 1.21030 0.97467 0.94843 1.17615 1.17712 0.92013 0.92603 0.87321 1.19824 1.02449 0.99900 1.31443 0.91301 1.26659 0.93665 1.05014 0.92283 1.69925 1.15472 1.38364 1.21158 0.85251 0.79427 0.76618 0.78923 1.18420 1.18974 1.19169 1.20673 0.95709 0.95936 1.16337 0.84039 0.84216 0.91144 0.90871 0.91527 0.91930 0.77551 0.85789 0.86258 0.89565 0.90567 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.99 18.54 20.01 0.37 -12.62 16 2 C 0.24 4.13 15.43 89.44 1.38 5.51 16 3 C -0.01 -0.11 5.70 28.79 0.16 0.05 16 4 C -0.12 -1.72 5.28 30.60 0.16 -1.56 16 5 C 0.13 2.77 4.91 86.38 0.42 3.20 16 6 N -0.76 -24.99 5.73 -339.57 -1.95 -26.94 16 7 C 0.22 9.56 6.64 38.16 0.25 9.81 16 8 C -0.30 -12.05 9.32 22.59 0.21 -11.84 16 9 C -0.06 -2.76 10.02 22.20 0.22 -2.53 16 10 C -0.29 -14.58 9.79 22.75 0.22 -14.36 16 11 C 0.11 5.90 5.57 -21.31 -0.12 5.78 16 12 C -0.51 -28.25 9.05 23.46 0.21 -28.04 16 13 H 0.07 3.76 7.91 -2.91 -0.02 3.74 16 14 C 0.04 1.98 5.14 85.25 0.44 2.41 16 15 N -0.82 -43.65 10.95 21.82 0.24 -43.41 16 16 Si 0.98 39.13 29.59 68.60 2.03 41.16 16 17 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 18 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 19 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 20 C -0.26 -13.72 8.53 22.85 0.19 -13.52 16 21 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 22 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.28 7.94 -2.39 -0.02 1.26 16 26 H 0.06 1.26 7.94 -2.39 -0.02 1.24 16 27 H 0.39 12.64 8.48 -92.71 -0.79 11.85 16 28 H 0.12 4.06 6.70 -2.91 -0.02 4.04 16 29 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.09 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.28 13.58 8.30 -92.71 -0.77 12.82 16 32 H 0.10 5.34 6.16 -2.91 -0.02 5.32 16 Total: -1.00 -68.32 283.64 4.80 -63.51 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.34 Total: 23.39 kcal Atomic # 6 Polarization: -48.86 SS G_CDS: 3.77 Total: -45.10 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.34 Total: -82.97 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -68.32 4.80 -63.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313425140.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.682 kcal (2) G-P(sol) polarization free energy of solvation -68.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds