Wall clock time and date at job start Mon Mar 30 2020 03:02:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13593 * 1
3 3 C 1.47207 * 179.97438 * 2 1
4 4 C 1.53000 * 109.47272 * 15.41549 * 3 2 1
5 5 C 1.53002 * 109.46693 * 180.02562 * 4 3 2
6 6 N 1.46499 * 109.46863 * 179.97438 * 5 4 3
7 7 C 1.39685 * 120.00341 * 180.02562 * 6 5 4
8 8 C 1.39337 * 119.94932 * 359.97438 * 7 6 5
9 9 C 1.38478 * 120.42823 * 180.02562 * 8 7 6
10 10 C 1.37688 * 120.32117 * 359.97438 * 9 8 7
11 11 C 1.40752 * 119.89434 * 0.03305 * 10 9 8
12 12 C 1.41411 * 120.20601 * 179.97438 * 11 10 9
13 13 H 1.07995 * 120.00317 * 24.35956 * 12 11 10
14 14 C 1.39935 * 119.99624 * 204.36087 * 12 11 10
15 15 N 1.30827 * 120.00201 * 17.84631 * 14 12 11
16 16 Si 1.86796 * 119.99610 * 197.84653 * 14 12 11
17 17 H 1.48501 * 109.47546 * 359.97438 * 16 14 12
18 18 H 1.48505 * 109.47184 * 119.99998 * 16 14 12
19 19 H 1.48498 * 109.47199 * 240.00043 * 16 14 12
20 20 C 1.38275 * 119.95691 * 179.97438 * 7 6 5
21 21 H 1.09004 * 109.46562 * 255.41388 * 3 2 1
22 22 H 1.09000 * 109.47002 * 135.42268 * 3 2 1
23 23 H 1.08993 * 109.47002 * 60.00161 * 4 3 2
24 24 H 1.08998 * 109.47097 * 299.99569 * 4 3 2
25 25 H 1.09002 * 109.47151 * 60.00453 * 5 4 3
26 26 H 1.09002 * 109.47344 * 299.99718 * 5 4 3
27 27 H 0.97003 * 120.00136 * 359.97438 * 6 5 4
28 28 H 1.07999 * 119.78413 * 0.02562 * 8 7 6
29 29 H 1.07997 * 119.84142 * 179.97438 * 9 8 7
30 30 H 1.07997 * 120.05363 * 179.97438 * 10 9 8
31 31 H 0.97003 * 119.99955 * 179.97438 * 15 14 12
32 32 H 1.08008 * 120.15896 * 359.70358 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1359 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1187 -1.3897 -0.3834
5 6 4.6487 -1.3890 -0.3828
6 7 5.1377 -2.7205 -0.7493
7 6 6.5111 -2.9662 -0.8160
8 6 7.4152 -1.9441 -0.5342
9 6 8.7788 -2.1766 -0.5978
10 6 9.2564 -3.4219 -0.9401
11 6 8.3553 -4.4641 -1.2276
12 6 8.8385 -5.7454 -1.5803
13 1 9.8236 -6.0566 -1.2655
14 6 8.0403 -6.6102 -2.3374
15 7 7.0212 -6.1397 -3.0094
16 14 8.4300 -8.4364 -2.3885
17 1 9.6243 -8.7114 -1.5500
18 1 7.2710 -9.2046 -1.8670
19 1 8.7047 -8.8449 -3.7894
20 6 6.9716 -4.2234 -1.1616
21 1 2.9711 0.2596 0.9946
22 1 2.9710 0.7328 -0.7213
23 1 2.7555 -1.6486 -1.3779
24 1 2.7557 -2.1218 0.3380
25 1 5.0115 -1.1303 0.6120
26 1 5.0121 -0.6569 -1.1039
27 1 4.5077 -3.4317 -0.9450
28 1 7.0500 -0.9642 -0.2644
29 1 9.4711 -1.3774 -0.3779
30 1 10.3207 -3.5983 -0.9888
31 1 6.4681 -6.7392 -3.5345
32 1 6.2718 -5.0178 -1.3756
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000313425140.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:49
Heat of formation + Delta-G solvation = 14.167484 kcal
Electronic energy + Delta-G solvation = -14588.123121 eV
Core-core repulsion = 12125.906699 eV
Total energy + Delta-G solvation = -2462.216423 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.60585 -38.08470 -36.83243 -35.30843 -33.81219 -31.28163 -29.97979 -27.08279
-26.77618 -23.42165 -22.25700 -21.57902 -19.11745 -18.30274 -17.52073 -16.61762
-16.42372 -16.41167 -15.78438 -14.91440 -14.88803 -14.47958 -14.38010 -13.97214
-13.66531 -13.56787 -13.18721 -12.78845 -12.68462 -12.47034 -12.43408 -12.25421
-12.01461 -11.66887 -11.45015 -11.23598 -11.01919 -10.38730 -9.18801 -8.58812
-7.81725 -6.27808 1.12429 1.39588 1.40494 1.54525 1.60949 1.78364
1.86502 2.25262 2.83566 2.88598 3.21872 3.92553 4.16360 4.25637
4.27834 4.60171 4.72714 4.80270 4.87695 4.95148 5.06146 5.24169
5.28257 5.29378 5.38367 5.52011 5.67585 6.02802 6.18531 6.27438
6.33600 6.63427 6.65484 7.00119 7.11309 7.16119 7.31880 8.41474
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.031415 B = 0.005113 C = 0.004463
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 891.080129 B = 5474.520463 C = 6272.435915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.511 5.511
2 C 0.238 3.762
3 C -0.013 4.013
4 C -0.118 4.118
5 C 0.132 3.868
6 N -0.760 5.760
7 C 0.219 3.781
8 C -0.297 4.297
9 C -0.064 4.064
10 C -0.289 4.289
11 C 0.106 3.894
12 C -0.506 4.506
13 H 0.069 0.931
14 C 0.038 3.962
15 N -0.823 5.823
16 Si 0.977 3.023
17 H -0.261 1.261
18 H -0.265 1.265
19 H -0.267 1.267
20 C -0.262 4.262
21 H 0.142 0.858
22 H 0.140 0.860
23 H 0.070 0.930
24 H 0.073 0.927
25 H 0.067 0.933
26 H 0.063 0.937
27 H 0.391 0.609
28 H 0.124 0.876
29 H 0.119 0.881
30 H 0.086 0.914
31 H 0.284 0.716
32 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.918 7.973 4.133 10.239
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.189 5.189
2 C -0.078 4.078
3 C -0.054 4.054
4 C -0.157 4.157
5 C 0.008 3.992
6 N -0.392 5.392
7 C 0.118 3.882
8 C -0.319 4.319
9 C -0.082 4.082
10 C -0.310 4.310
11 C 0.104 3.896
12 C -0.536 4.536
13 H 0.087 0.913
14 C -0.176 4.176
15 N -0.449 5.449
16 Si 0.798 3.202
17 H -0.184 1.184
18 H -0.190 1.190
19 H -0.192 1.192
20 C -0.287 4.287
21 H 0.160 0.840
22 H 0.158 0.842
23 H 0.089 0.911
24 H 0.091 0.909
25 H 0.085 0.915
26 H 0.081 0.919
27 H 0.224 0.776
28 H 0.142 0.858
29 H 0.137 0.863
30 H 0.104 0.896
31 H 0.094 0.906
32 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -6.827 8.142 4.028 11.363
hybrid contribution 0.382 -1.338 -0.403 1.449
sum -6.445 6.804 3.625 10.049
Atomic orbital electron populations
1.81261 1.15374 1.10708 1.11542 1.29861 0.95864 0.91177 0.90925
1.19421 0.78686 0.99040 1.08203 1.21575 0.94220 0.96855 1.03095
1.21274 0.93021 0.84375 1.00502 1.44562 1.02608 1.12928 1.79082
1.17758 0.84303 0.93215 0.92935 1.20297 0.92418 0.98669 1.20559
1.20685 0.95293 0.95568 0.96701 1.21030 0.97467 0.94843 1.17615
1.17712 0.92013 0.92603 0.87321 1.19824 1.02449 0.99900 1.31443
0.91301 1.26659 0.93665 1.05014 0.92283 1.69925 1.15472 1.38364
1.21158 0.85251 0.79427 0.76618 0.78923 1.18420 1.18974 1.19169
1.20673 0.95709 0.95936 1.16337 0.84039 0.84216 0.91144 0.90871
0.91527 0.91930 0.77551 0.85789 0.86258 0.89565 0.90567 0.88482
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -12.99 18.54 20.01 0.37 -12.62 16
2 C 0.24 4.13 15.43 89.44 1.38 5.51 16
3 C -0.01 -0.11 5.70 28.79 0.16 0.05 16
4 C -0.12 -1.72 5.28 30.60 0.16 -1.56 16
5 C 0.13 2.77 4.91 86.38 0.42 3.20 16
6 N -0.76 -24.99 5.73 -339.57 -1.95 -26.94 16
7 C 0.22 9.56 6.64 38.16 0.25 9.81 16
8 C -0.30 -12.05 9.32 22.59 0.21 -11.84 16
9 C -0.06 -2.76 10.02 22.20 0.22 -2.53 16
10 C -0.29 -14.58 9.79 22.75 0.22 -14.36 16
11 C 0.11 5.90 5.57 -21.31 -0.12 5.78 16
12 C -0.51 -28.25 9.05 23.46 0.21 -28.04 16
13 H 0.07 3.76 7.91 -2.91 -0.02 3.74 16
14 C 0.04 1.98 5.14 85.25 0.44 2.41 16
15 N -0.82 -43.65 10.95 21.82 0.24 -43.41 16
16 Si 0.98 39.13 29.59 68.60 2.03 41.16 16
17 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16
18 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16
19 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16
20 C -0.26 -13.72 8.53 22.85 0.19 -13.52 16
21 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16
22 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16
23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
25 H 0.07 1.28 7.94 -2.39 -0.02 1.26 16
26 H 0.06 1.26 7.94 -2.39 -0.02 1.24 16
27 H 0.39 12.64 8.48 -92.71 -0.79 11.85 16
28 H 0.12 4.06 6.70 -2.91 -0.02 4.04 16
29 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16
30 H 0.09 4.20 8.06 -2.91 -0.02 4.18 16
31 H 0.28 13.58 8.30 -92.71 -0.77 12.82 16
32 H 0.10 5.34 6.16 -2.91 -0.02 5.32 16
Total: -1.00 -68.32 283.64 4.80 -63.51
By element:
Atomic # 1 Polarization: 23.04 SS G_CDS: 0.34 Total: 23.39 kcal
Atomic # 6 Polarization: -48.86 SS G_CDS: 3.77 Total: -45.10 kcal
Atomic # 7 Polarization: -81.63 SS G_CDS: -1.34 Total: -82.97 kcal
Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal
Total: -68.32 4.80 -63.51 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000313425140.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.682 kcal
(2) G-P(sol) polarization free energy of solvation -68.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds