Wall clock time and date at job start Mon Mar 30 2020 03:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86803 * 120.00000 * 2 1 4 4 H 1.48500 * 109.47017 * 270.00129 * 3 2 1 5 5 H 1.48502 * 109.46852 * 29.99941 * 3 2 1 6 6 H 1.48501 * 109.47145 * 149.99786 * 3 2 1 7 7 C 1.39933 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00337 * 162.51854 * 7 2 1 9 9 C 1.41413 * 119.99833 * 342.52945 * 7 2 1 10 10 C 1.40775 * 120.20662 * 334.98330 * 9 7 2 11 11 C 1.37651 * 119.89243 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.31763 * 359.72261 * 11 10 9 13 13 C 1.39274 * 120.42789 * 0.55701 * 12 11 10 14 14 N 1.39858 * 119.95062 * 179.71719 * 13 12 11 15 15 C 1.46733 * 124.64019 * 359.75602 * 14 13 12 16 16 C 1.54178 * 106.67270 * 181.89415 * 15 14 13 17 17 C 1.54607 * 102.78258 * 15.64988 * 16 15 14 18 18 C 1.37067 * 124.64291 * 179.74885 * 14 13 12 19 19 N 1.29334 * 125.87532 * 340.53090 * 18 14 13 20 20 C 1.38306 * 120.09713 * 359.44343 * 13 12 11 21 21 H 0.97000 * 119.99956 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.05911 * 0.02562 * 10 9 7 23 23 H 1.07994 * 119.84452 * 180.02562 * 11 10 9 24 24 H 1.08003 * 119.78779 * 180.29933 * 12 11 10 25 25 H 1.09005 * 110.02167 * 62.59457 * 15 14 13 26 26 H 1.08997 * 110.02032 * 301.20144 * 15 14 13 27 27 H 1.08998 * 110.75418 * 257.32064 * 16 15 14 28 28 H 1.08999 * 110.74688 * 133.96739 * 16 15 14 29 29 H 1.09003 * 110.64076 * 92.56190 * 17 16 15 30 30 H 1.08999 * 110.63382 * 215.61876 * 17 16 15 31 31 H 0.97001 * 120.00333 * 179.97438 * 19 18 14 32 32 H 1.08005 * 120.15792 * 180.24907 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0506 -1.2335 -0.2804 9 6 1.3499 -2.4081 0.3687 10 6 0.2213 -2.3658 1.2091 11 6 -0.4140 -3.5343 1.5639 12 6 0.0484 -4.7524 1.0932 13 6 1.1672 -4.8101 0.2658 14 7 1.6289 -6.0458 -0.1988 15 6 1.0178 -7.3399 0.1249 16 6 1.8796 -8.4197 -0.5595 17 6 3.1770 -7.6533 -0.9054 18 6 2.7143 -6.2138 -1.0189 19 7 3.2513 -5.3014 -1.7618 20 6 1.8189 -3.6469 -0.1016 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1456 -1.4182 1.5749 23 1 -1.2800 -3.5009 2.2082 24 1 -0.4596 -5.6635 1.3731 25 1 -0.0017 -7.3777 -0.2591 26 1 1.0162 -7.4924 1.2042 27 1 1.3941 -8.7854 -1.4642 28 1 2.0874 -9.2404 0.1272 29 1 3.9106 -7.7592 -0.1062 30 1 3.5873 -8.0010 -1.8535 31 1 4.0215 -5.5147 -2.3115 32 1 2.6842 -3.6903 -0.7465 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313437636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:39 Heat of formation + Delta-G solvation = 47.646314 kcal Electronic energy + Delta-G solvation = -15426.143014 eV Core-core repulsion = 12965.378343 eV Total energy + Delta-G solvation = -2460.764672 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56332 -36.90670 -33.72732 -33.13279 -31.83933 -29.63852 -27.61272 -26.58836 -25.09670 -21.99858 -21.55365 -19.94073 -18.85119 -17.38079 -15.98576 -15.89316 -15.07983 -14.39656 -14.18210 -14.15103 -13.16899 -13.03767 -12.56289 -12.51939 -12.37522 -11.89292 -11.48458 -11.35100 -11.01582 -10.96354 -10.59276 -10.39678 -10.18495 -9.83900 -9.40777 -9.09107 -8.60235 -8.26458 -7.31156 -6.64605 -6.35042 -4.21494 2.66661 2.93978 3.14738 3.19934 3.29873 3.49138 3.59415 4.04556 4.55925 4.61212 4.77574 4.89113 5.27015 5.52231 5.60634 5.75106 5.80414 5.90062 6.07186 6.11854 6.31712 6.56032 6.86452 7.16997 7.32498 7.35485 7.56075 7.65596 7.96295 8.16667 8.29486 8.39278 8.51194 8.78529 8.94364 9.07999 9.15175 10.32832 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039853 B = 0.007019 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.417747 B = 3988.045125 C = 4583.025230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.076 0.924 9 C 0.126 3.874 10 C -0.186 4.186 11 C -0.087 4.087 12 C -0.281 4.281 13 C 0.189 3.811 14 N -0.544 5.544 15 C 0.114 3.886 16 C -0.128 4.128 17 C -0.142 4.142 18 C 0.405 3.595 19 N -0.734 5.734 20 C -0.246 4.246 21 H 0.278 0.722 22 H 0.116 0.884 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.338 0.662 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.861 -11.688 0.155 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.095 0.905 9 C 0.123 3.877 10 C -0.206 4.206 11 C -0.106 4.106 12 C -0.303 4.303 13 C 0.097 3.903 14 N -0.255 5.255 15 C -0.009 4.009 16 C -0.167 4.167 17 C -0.184 4.184 18 C 0.122 3.878 19 N -0.362 5.362 20 C -0.269 4.269 21 H 0.089 0.911 22 H 0.133 0.867 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.154 0.846 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.372 -10.554 0.032 10.817 hybrid contribution 0.723 -0.110 -0.194 0.756 sum 3.095 -10.664 -0.162 11.105 Atomic orbital electron populations 1.69853 1.07540 1.28890 1.35855 1.25886 0.94677 1.01143 0.92370 0.86363 0.80658 0.80823 0.79126 1.19586 1.20222 1.18539 1.19535 0.97960 0.91056 1.40175 0.90540 1.17485 0.90695 0.91655 0.87872 1.21281 1.00293 0.96651 1.02368 1.20398 0.98225 0.92696 0.99247 1.19866 1.01955 0.96770 1.11717 1.17419 0.94653 0.82353 0.95854 1.44190 1.28549 1.05206 1.47519 1.21848 0.97055 0.81814 1.00221 1.22439 0.95437 0.97457 1.01355 1.22333 0.98576 0.94343 1.03191 1.21872 0.87944 0.89661 0.88305 1.69021 1.18848 1.34271 1.14069 1.21496 1.06123 0.90350 1.08890 0.91117 0.86653 0.89360 0.89631 0.91378 0.91197 0.90391 0.89794 0.89007 0.89769 0.84564 0.84508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.57 10.97 55.55 0.61 -20.96 16 2 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 3 Si 0.91 19.58 29.59 -169.99 -5.03 14.55 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.93 9.05 -37.74 -0.34 -13.27 16 8 H 0.08 2.11 7.90 -52.49 -0.41 1.70 16 9 C 0.13 3.59 5.57 -106.85 -0.59 3.00 16 10 C -0.19 -5.08 8.69 -38.84 -0.34 -5.42 16 11 C -0.09 -2.13 10.02 -39.69 -0.40 -2.52 16 12 C -0.28 -6.55 9.47 -39.09 -0.37 -6.92 16 13 C 0.19 4.56 6.61 -83.79 -0.55 4.00 16 14 N -0.54 -10.61 3.20 -109.85 -0.35 -10.96 16 15 C 0.11 1.62 6.07 -3.30 -0.02 1.60 16 16 C -0.13 -1.32 7.07 -25.27 -0.18 -1.50 16 17 C -0.14 -1.68 6.93 -26.58 -0.18 -1.87 16 18 C 0.41 7.22 7.71 -154.03 -1.19 6.03 16 19 N -0.73 -14.40 11.15 33.15 0.37 -14.03 16 20 C -0.25 -6.63 9.02 -38.68 -0.35 -6.98 16 21 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 22 H 0.12 3.23 6.18 -52.49 -0.32 2.91 16 23 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 24 H 0.09 1.74 7.22 -52.48 -0.38 1.36 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.34 5.48 8.92 -40.82 -0.36 5.12 16 32 H 0.14 3.72 5.32 -52.48 -0.28 3.44 16 LS Contribution 268.32 15.07 4.04 4.04 Total: -1.00 -31.40 268.32 -8.82 -40.22 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -3.85 Total: 9.07 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -4.60 Total: -21.93 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.63 Total: -45.95 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.40 -8.82 -40.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313437636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.862 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds