Wall clock time and date at job start Mon Mar 30 2020 03:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86803 * 120.00000 * 2 1 4 4 H 1.48500 * 109.47017 * 270.00129 * 3 2 1 5 5 H 1.48502 * 109.46852 * 29.99941 * 3 2 1 6 6 H 1.48501 * 109.47145 * 149.99786 * 3 2 1 7 7 C 1.39933 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00337 * 162.51854 * 7 2 1 9 9 C 1.41413 * 119.99833 * 342.52945 * 7 2 1 10 10 C 1.40775 * 120.20662 * 334.98330 * 9 7 2 11 11 C 1.37651 * 119.89243 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.31763 * 359.72261 * 11 10 9 13 13 C 1.39274 * 120.42789 * 0.55701 * 12 11 10 14 14 N 1.39858 * 119.95062 * 179.71719 * 13 12 11 15 15 C 1.46733 * 124.64019 * 359.75602 * 14 13 12 16 16 C 1.54178 * 106.67270 * 181.89415 * 15 14 13 17 17 C 1.54607 * 102.78258 * 15.64988 * 16 15 14 18 18 C 1.37067 * 124.64291 * 179.74885 * 14 13 12 19 19 N 1.29334 * 125.87532 * 340.53090 * 18 14 13 20 20 C 1.38306 * 120.09713 * 359.44343 * 13 12 11 21 21 H 0.97000 * 119.99956 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.05911 * 0.02562 * 10 9 7 23 23 H 1.07994 * 119.84452 * 180.02562 * 11 10 9 24 24 H 1.08003 * 119.78779 * 180.29933 * 12 11 10 25 25 H 1.09005 * 110.02167 * 62.59457 * 15 14 13 26 26 H 1.08997 * 110.02032 * 301.20144 * 15 14 13 27 27 H 1.08998 * 110.75418 * 257.32064 * 16 15 14 28 28 H 1.08999 * 110.74688 * 133.96739 * 16 15 14 29 29 H 1.09003 * 110.64076 * 92.56190 * 17 16 15 30 30 H 1.08999 * 110.63382 * 215.61876 * 17 16 15 31 31 H 0.97001 * 120.00333 * 179.97438 * 19 18 14 32 32 H 1.08005 * 120.15792 * 180.24907 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0506 -1.2335 -0.2804 9 6 1.3499 -2.4081 0.3687 10 6 0.2213 -2.3658 1.2091 11 6 -0.4140 -3.5343 1.5639 12 6 0.0484 -4.7524 1.0932 13 6 1.1672 -4.8101 0.2658 14 7 1.6289 -6.0458 -0.1988 15 6 1.0178 -7.3399 0.1249 16 6 1.8796 -8.4197 -0.5595 17 6 3.1770 -7.6533 -0.9054 18 6 2.7143 -6.2138 -1.0189 19 7 3.2513 -5.3014 -1.7618 20 6 1.8189 -3.6469 -0.1016 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1456 -1.4182 1.5749 23 1 -1.2800 -3.5009 2.2082 24 1 -0.4596 -5.6635 1.3731 25 1 -0.0017 -7.3777 -0.2591 26 1 1.0162 -7.4924 1.2042 27 1 1.3941 -8.7854 -1.4642 28 1 2.0874 -9.2404 0.1272 29 1 3.9106 -7.7592 -0.1062 30 1 3.5873 -8.0010 -1.8535 31 1 4.0215 -5.5147 -2.3115 32 1 2.6842 -3.6903 -0.7465 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313437636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:39 Heat of formation + Delta-G solvation = 29.080042 kcal Electronic energy + Delta-G solvation = -15426.948108 eV Core-core repulsion = 12965.378343 eV Total energy + Delta-G solvation = -2461.569766 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96015 -38.71642 -35.62295 -34.49586 -33.33935 -31.62993 -29.28878 -27.82986 -27.03645 -23.43770 -23.21038 -21.55835 -20.52704 -19.03590 -17.71530 -17.07386 -16.86498 -16.29561 -15.69749 -15.62244 -14.73034 -14.53999 -14.12676 -13.83524 -13.65694 -13.56502 -13.14877 -12.85250 -12.75192 -12.36546 -12.32606 -12.09460 -11.74361 -11.37992 -11.30166 -11.03433 -10.22359 -9.81962 -9.33645 -8.61940 -8.11992 -6.32183 0.95807 1.09092 1.36312 1.47595 1.53079 1.84751 2.16642 2.24157 2.78611 3.49339 3.68383 3.82927 4.07923 4.27683 4.47240 4.50564 4.71204 4.72736 4.81221 4.88058 5.06582 5.13844 5.15415 5.23376 5.34616 5.38349 5.66676 5.85537 6.02718 6.14481 6.27536 6.56315 6.70575 6.83020 7.03082 7.13797 7.59185 8.37373 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039853 B = 0.007019 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.417747 B = 3988.045125 C = 4583.025230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.501 4.501 8 H 0.065 0.935 9 C 0.096 3.904 10 C -0.216 4.216 11 C -0.086 4.086 12 C -0.276 4.276 13 C 0.193 3.807 14 N -0.558 5.558 15 C 0.101 3.899 16 C -0.112 4.112 17 C -0.129 4.129 18 C 0.391 3.609 19 N -0.782 5.782 20 C -0.279 4.279 21 H 0.287 0.713 22 H 0.099 0.901 23 H 0.117 0.883 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.351 0.649 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 -13.908 0.461 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.083 0.917 9 C 0.093 3.907 10 C -0.236 4.236 11 C -0.105 4.105 12 C -0.298 4.298 13 C 0.099 3.901 14 N -0.268 5.268 15 C -0.021 4.021 16 C -0.150 4.150 17 C -0.171 4.171 18 C 0.109 3.891 19 N -0.412 5.412 20 C -0.302 4.302 21 H 0.098 0.902 22 H 0.117 0.883 23 H 0.135 0.865 24 H 0.141 0.859 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.139 0.861 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.169 0.831 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.406 -12.839 0.327 13.067 hybrid contribution 0.681 0.409 -0.312 0.854 sum 3.088 -12.430 0.015 12.808 Atomic orbital electron populations 1.69900 1.08956 1.30384 1.36042 1.26755 0.95538 1.04406 0.91193 0.85213 0.79089 0.75900 0.79479 1.18770 1.18483 1.18484 1.19733 0.97849 0.92714 1.42750 0.91681 1.17852 0.91638 0.92590 0.88635 1.21228 1.01267 0.97198 1.03952 1.20753 0.98538 0.92293 0.98893 1.20250 1.01409 0.97680 1.10472 1.17557 0.93990 0.83805 0.94774 1.44543 1.29402 1.05302 1.47556 1.22256 0.97803 0.80419 1.01613 1.22494 0.93315 0.96706 1.02494 1.22341 0.99731 0.89847 1.05183 1.22683 0.87060 0.92435 0.86921 1.68892 1.20038 1.36789 1.15455 1.21572 1.06961 0.91458 1.10231 0.90207 0.88254 0.86464 0.85923 0.91093 0.89957 0.88900 0.86100 0.87488 0.87261 0.83127 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.33 10.97 21.82 0.24 -46.09 16 2 C 0.04 1.93 5.14 85.25 0.44 2.37 16 3 Si 0.98 41.22 29.59 68.60 2.03 43.25 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.50 -29.97 9.05 23.46 0.21 -29.76 16 8 H 0.06 3.86 7.90 -2.91 -0.02 3.83 16 9 C 0.10 5.75 5.57 -21.31 -0.12 5.63 16 10 C -0.22 -12.28 8.69 22.75 0.20 -12.08 16 11 C -0.09 -4.21 10.02 22.20 0.22 -3.99 16 12 C -0.28 -12.54 9.47 22.59 0.21 -12.33 16 13 C 0.19 9.34 6.61 38.13 0.25 9.59 16 14 N -0.56 -20.95 3.20 -501.44 -1.61 -22.56 16 15 C 0.10 2.50 6.07 86.73 0.53 3.03 16 16 C -0.11 -1.74 7.07 31.54 0.22 -1.52 16 17 C -0.13 -2.57 6.93 30.69 0.21 -2.36 16 18 C 0.39 13.45 7.71 138.10 1.06 14.51 16 19 N -0.78 -31.12 11.15 -49.04 -0.55 -31.67 16 20 C -0.28 -15.71 9.02 22.85 0.21 -15.51 16 21 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 22 H 0.10 5.84 6.18 -2.91 -0.02 5.82 16 23 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 24 H 0.12 4.59 7.22 -2.91 -0.02 4.57 16 25 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.08 1.84 8.13 -2.39 -0.02 1.82 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 28 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.35 11.52 8.92 -92.71 -0.83 10.70 16 32 H 0.13 7.23 5.32 -2.91 -0.02 7.22 16 Total: -1.00 -72.98 268.32 4.07 -68.90 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.31 Total: 30.59 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 3.65 Total: -42.42 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -1.91 Total: -100.32 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -72.98 4.07 -68.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313437636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.981 kcal (2) G-P(sol) polarization free energy of solvation -72.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds