Wall clock time and date at job start Mon Mar 30 2020 03:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86798 * 119.99949 * 2 1 4 4 H 1.48494 * 109.47308 * 275.40855 * 3 2 1 5 5 H 1.48502 * 109.46929 * 35.41160 * 3 2 1 6 6 H 1.48495 * 109.46801 * 155.40642 * 3 2 1 7 7 C 1.39864 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00346 * 341.78657 * 7 2 1 9 9 C 1.41202 * 120.00194 * 161.78902 * 7 2 1 10 10 C 1.41322 * 120.57071 * 150.34963 * 9 7 2 11 11 C 1.36564 * 118.40535 * 180.25686 * 10 9 7 12 12 C 1.39707 * 119.49606 * 359.45689 * 11 10 9 13 13 N 1.38368 * 119.43227 * 180.25690 * 12 11 10 14 14 C 1.46492 * 120.00068 * 0.29945 * 13 12 11 15 15 C 1.54639 * 111.03310 * 270.32818 * 14 13 12 16 16 C 1.51169 * 104.69344 * 217.35988 * 15 14 13 17 17 C 1.30524 * 111.11973 * 16.38861 * 16 15 14 18 18 C 1.51106 * 111.10443 * 0.02724 * 17 16 15 19 19 N 1.32742 * 121.13370 * 0.55911 * 12 11 10 20 20 C 1.31481 * 121.73471 * 359.72058 * 19 12 11 21 21 H 0.96999 * 119.99748 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.80014 * 359.97438 * 10 9 7 23 23 H 1.08008 * 120.25256 * 179.72576 * 11 10 9 24 24 H 0.97003 * 119.99821 * 180.29658 * 13 12 11 25 25 H 1.08997 * 110.92034 * 34.29479 * 14 13 12 26 26 H 1.09002 * 110.39209 * 336.14586 * 15 14 13 27 27 H 1.09006 * 110.38546 * 98.52445 * 15 14 13 28 28 H 1.08001 * 124.43333 * 196.40129 * 16 15 14 29 29 H 1.08005 * 124.44831 * 180.02562 * 17 16 15 30 30 H 1.08999 * 110.38376 * 224.75348 * 18 17 16 31 31 H 1.09000 * 110.48210 * 102.42749 * 18 17 16 32 32 H 1.08004 * 119.81879 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3763 2.1124 -1.3938 5 1 1.5023 2.6169 0.8113 6 1 3.5930 1.4098 0.5827 7 6 2.0084 -1.2113 -0.0005 8 1 1.5090 -2.1233 0.2914 9 6 3.3674 -1.2418 -0.3827 10 6 4.2449 -2.2078 0.1594 11 6 5.5516 -2.1937 -0.2372 12 6 5.9781 -1.2420 -1.1668 13 7 7.3012 -1.2322 -1.5717 14 6 8.2399 -2.2185 -1.0312 15 6 8.9135 -1.6949 0.2586 16 6 10.3363 -2.1994 0.1801 17 6 10.6339 -2.5806 -1.0323 18 6 9.4599 -2.3936 -1.9650 19 7 5.1372 -0.3431 -1.6638 20 6 3.8712 -0.3108 -1.3105 21 1 -0.4850 0.8401 -0.0004 22 1 3.8917 -2.9368 0.8736 23 1 6.2491 -2.9155 0.1615 24 1 7.6071 -0.5723 -2.2135 25 1 7.7430 -3.1722 -0.8536 26 1 8.8978 -0.6052 0.2798 27 1 8.4143 -2.0999 1.1390 28 1 11.0172 -2.2394 1.0175 29 1 11.5933 -2.9776 -1.3297 30 1 9.3321 -3.2733 -2.5957 31 1 9.5987 -1.5039 -2.5793 32 1 3.2142 0.4344 -1.7341 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380027974.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:26 Heat of formation + Delta-G solvation = 51.634998 kcal Electronic energy + Delta-G solvation = -15203.919687 eV Core-core repulsion = 12743.327977 eV Total energy + Delta-G solvation = -2460.591709 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30973 -38.16187 -34.50186 -33.09532 -31.29586 -29.67099 -28.14639 -27.42201 -24.34875 -22.66872 -20.95679 -20.23707 -18.78857 -17.52963 -16.83972 -16.24919 -15.63051 -15.17138 -14.20605 -13.71210 -13.22668 -13.14061 -12.64094 -12.59806 -12.30770 -12.16849 -11.91514 -11.79115 -11.25426 -11.15294 -10.93454 -10.82213 -10.39872 -10.01320 -9.45091 -8.96163 -8.82894 -8.55136 -8.16168 -6.88813 -6.87589 -4.30325 2.19747 2.53638 2.68374 3.16639 3.24458 3.35544 3.94156 4.01297 4.56393 4.66040 4.77557 5.16316 5.26759 5.46849 5.54884 5.67753 5.76210 5.82772 5.92687 5.99735 6.10256 6.25708 6.30766 6.47113 6.54213 6.82550 6.94238 7.05511 7.31903 7.32635 7.80925 8.04591 8.32339 8.40861 8.65661 8.80273 9.48547 10.15001 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.054963 B = 0.005956 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.306740 B = 4700.357621 C = 4824.998962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.084 3.916 3 Si 0.904 3.096 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.250 1.250 7 C -0.444 4.444 8 H 0.089 0.911 9 C 0.011 3.989 10 C -0.136 4.136 11 C -0.185 4.185 12 C 0.278 3.722 13 N -0.734 5.734 14 C 0.164 3.836 15 C -0.123 4.123 16 C -0.159 4.159 17 C -0.172 4.172 18 C -0.106 4.106 19 N -0.510 5.510 20 C 0.005 3.995 21 H 0.284 0.716 22 H 0.111 0.889 23 H 0.105 0.895 24 H 0.391 0.609 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.109 -2.675 -0.432 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.006 3.994 10 C -0.163 4.163 11 C -0.209 4.209 12 C 0.046 3.954 13 N -0.371 5.371 14 C 0.057 3.943 15 C -0.162 4.162 16 C -0.177 4.177 17 C -0.190 4.190 18 C -0.144 4.144 19 N -0.224 5.224 20 C -0.154 4.154 21 H 0.094 0.906 22 H 0.129 0.871 23 H 0.123 0.877 24 H 0.225 0.775 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.121 -2.120 -0.911 15.296 hybrid contribution 0.086 0.404 0.471 0.626 sum 15.206 -1.716 -0.440 15.309 Atomic orbital electron populations 1.69722 1.07883 1.30000 1.36359 1.26050 0.94701 1.01332 0.91308 0.86429 0.81023 0.80357 0.79073 1.19366 1.21623 1.17313 1.19207 0.92784 0.96075 1.39390 0.89255 1.18501 0.94387 0.93564 0.92982 1.21009 0.92224 1.01885 1.01206 1.20793 0.97012 1.00948 1.02164 1.17746 0.85380 0.95016 0.97244 1.43637 1.05472 1.36992 1.51043 1.21431 0.88567 0.92451 0.91894 1.22027 0.92874 1.01593 0.99683 1.23314 0.97576 0.99244 0.97592 1.23156 0.98855 1.01588 0.95406 1.21586 0.92671 1.02263 0.97851 1.66538 1.04760 1.23559 1.27579 1.22243 0.90441 1.02653 1.00035 0.90586 0.87142 0.87747 0.77458 0.89561 0.90168 0.91031 0.86151 0.86000 0.90814 0.90352 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.91 13.93 55.54 0.77 -21.14 16 2 C 0.08 2.22 5.41 -17.34 -0.09 2.12 16 3 Si 0.90 21.23 24.52 -169.99 -4.17 17.07 16 4 H -0.27 -6.15 6.71 56.52 0.38 -5.77 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.25 -6.13 6.85 56.52 0.39 -5.74 16 7 C -0.44 -12.07 9.58 -37.85 -0.36 -12.43 16 8 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 9 C 0.01 0.29 5.12 -106.65 -0.55 -0.26 16 10 C -0.14 -3.15 9.88 -39.01 -0.39 -3.54 16 11 C -0.19 -3.90 9.16 -39.64 -0.36 -4.26 16 12 C 0.28 6.00 7.64 -155.13 -1.19 4.81 16 13 N -0.73 -12.58 5.32 -52.21 -0.28 -12.85 16 14 C 0.16 2.27 3.11 -66.21 -0.21 2.07 16 15 C -0.12 -1.59 6.55 -26.79 -0.18 -1.76 16 16 C -0.16 -1.70 10.78 -35.66 -0.38 -2.09 16 17 C -0.17 -1.74 10.78 -35.69 -0.38 -2.12 16 18 C -0.11 -1.18 6.54 -26.83 -0.18 -1.36 16 19 N -0.51 -12.36 10.37 -11.79 -0.12 -12.48 16 20 C 0.00 0.12 8.37 -16.75 -0.14 -0.02 16 21 H 0.28 6.93 8.30 -40.82 -0.34 6.60 16 22 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 23 H 0.10 1.87 6.19 -52.48 -0.32 1.55 16 24 H 0.39 6.35 8.51 -40.82 -0.35 6.00 16 25 H 0.09 1.23 6.48 -51.93 -0.34 0.89 16 26 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.85 7.78 -51.93 -0.40 0.45 16 32 H 0.13 3.33 4.72 -52.48 -0.25 3.09 16 LS Contribution 266.29 15.07 4.01 4.01 Total: -1.00 -28.49 266.29 -7.97 -36.46 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.79 Total: 7.77 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -4.40 Total: -18.83 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.37 Total: -46.47 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.17 Total: 17.07 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.49 -7.97 -36.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380027974.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.095 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds