Wall clock time and date at job start Mon Mar 30 2020 03:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86798 * 119.99949 * 2 1 4 4 H 1.48494 * 109.47308 * 275.40855 * 3 2 1 5 5 H 1.48502 * 109.46929 * 35.41160 * 3 2 1 6 6 H 1.48495 * 109.46801 * 155.40642 * 3 2 1 7 7 C 1.39864 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00346 * 341.78657 * 7 2 1 9 9 C 1.41202 * 120.00194 * 161.78902 * 7 2 1 10 10 C 1.41322 * 120.57071 * 150.34963 * 9 7 2 11 11 C 1.36564 * 118.40535 * 180.25686 * 10 9 7 12 12 C 1.39707 * 119.49606 * 359.45689 * 11 10 9 13 13 N 1.38368 * 119.43227 * 180.25690 * 12 11 10 14 14 C 1.46492 * 120.00068 * 0.29945 * 13 12 11 15 15 C 1.54639 * 111.03310 * 270.32818 * 14 13 12 16 16 C 1.51169 * 104.69344 * 217.35988 * 15 14 13 17 17 C 1.30524 * 111.11973 * 16.38861 * 16 15 14 18 18 C 1.51106 * 111.10443 * 0.02724 * 17 16 15 19 19 N 1.32742 * 121.13370 * 0.55911 * 12 11 10 20 20 C 1.31481 * 121.73471 * 359.72058 * 19 12 11 21 21 H 0.96999 * 119.99748 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.80014 * 359.97438 * 10 9 7 23 23 H 1.08008 * 120.25256 * 179.72576 * 11 10 9 24 24 H 0.97003 * 119.99821 * 180.29658 * 13 12 11 25 25 H 1.08997 * 110.92034 * 34.29479 * 14 13 12 26 26 H 1.09002 * 110.39209 * 336.14586 * 15 14 13 27 27 H 1.09006 * 110.38546 * 98.52445 * 15 14 13 28 28 H 1.08001 * 124.43333 * 196.40129 * 16 15 14 29 29 H 1.08005 * 124.44831 * 180.02562 * 17 16 15 30 30 H 1.08999 * 110.38376 * 224.75348 * 18 17 16 31 31 H 1.09000 * 110.48210 * 102.42749 * 18 17 16 32 32 H 1.08004 * 119.81879 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3763 2.1124 -1.3938 5 1 1.5023 2.6169 0.8113 6 1 3.5930 1.4098 0.5827 7 6 2.0084 -1.2113 -0.0005 8 1 1.5090 -2.1233 0.2914 9 6 3.3674 -1.2418 -0.3827 10 6 4.2449 -2.2078 0.1594 11 6 5.5516 -2.1937 -0.2372 12 6 5.9781 -1.2420 -1.1668 13 7 7.3012 -1.2322 -1.5717 14 6 8.2399 -2.2185 -1.0312 15 6 8.9135 -1.6949 0.2586 16 6 10.3363 -2.1994 0.1801 17 6 10.6339 -2.5806 -1.0323 18 6 9.4599 -2.3936 -1.9650 19 7 5.1372 -0.3431 -1.6638 20 6 3.8712 -0.3108 -1.3105 21 1 -0.4850 0.8401 -0.0004 22 1 3.8917 -2.9368 0.8736 23 1 6.2491 -2.9155 0.1615 24 1 7.6071 -0.5723 -2.2135 25 1 7.7430 -3.1722 -0.8536 26 1 8.8978 -0.6052 0.2798 27 1 8.4143 -2.0999 1.1390 28 1 11.0172 -2.2394 1.0175 29 1 11.5933 -2.9776 -1.3297 30 1 9.3321 -3.2733 -2.5957 31 1 9.5987 -1.5039 -2.5793 32 1 3.2142 0.4344 -1.7341 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380027974.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:26 Heat of formation + Delta-G solvation = 34.313728 kcal Electronic energy + Delta-G solvation = -15204.670793 eV Core-core repulsion = 12743.327977 eV Total energy + Delta-G solvation = -2461.342816 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.84199 -39.48014 -36.17810 -34.80820 -33.14077 -31.39490 -29.08323 -28.67907 -26.12274 -24.43892 -22.70332 -21.51515 -19.67739 -19.41617 -18.40230 -17.68462 -16.96436 -16.70279 -15.85098 -15.40767 -15.01906 -14.84317 -14.38861 -13.70307 -13.63748 -13.60209 -13.30262 -12.98751 -12.76268 -12.72925 -12.35444 -12.10544 -12.03436 -11.89122 -11.30064 -10.59259 -10.37211 -10.02625 -9.76753 -8.85419 -8.60395 -6.30155 0.66874 0.82504 1.26897 1.37884 1.40925 1.45741 2.10819 2.51644 2.66800 3.51649 3.70387 3.85166 3.97085 4.19541 4.33435 4.43028 4.52934 4.59448 4.70557 4.82577 4.86769 4.98397 5.07843 5.08971 5.11253 5.27282 5.47214 5.53385 5.64461 5.96501 6.03724 6.18494 6.50929 6.57963 6.78544 6.99974 7.66910 8.23764 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.054963 B = 0.005956 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.306740 B = 4700.357621 C = 4824.998962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.052 3.948 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.475 4.475 8 H 0.062 0.938 9 C -0.014 4.014 10 C -0.132 4.132 11 C -0.184 4.184 12 C 0.297 3.703 13 N -0.723 5.723 14 C 0.152 3.848 15 C -0.122 4.122 16 C -0.167 4.167 17 C -0.161 4.161 18 C -0.103 4.103 19 N -0.534 5.534 20 C -0.007 4.007 21 H 0.292 0.708 22 H 0.126 0.874 23 H 0.142 0.858 24 H 0.397 0.603 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.425 -3.119 -0.612 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.162 4.162 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.506 4.506 8 H 0.080 0.920 9 C -0.020 4.020 10 C -0.158 4.158 11 C -0.208 4.208 12 C 0.061 3.939 13 N -0.360 5.360 14 C 0.046 3.954 15 C -0.161 4.161 16 C -0.185 4.185 17 C -0.179 4.179 18 C -0.140 4.140 19 N -0.250 5.250 20 C -0.163 4.163 21 H 0.103 0.897 22 H 0.144 0.856 23 H 0.159 0.841 24 H 0.232 0.768 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.157 0.843 29 H 0.166 0.834 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.457 -2.564 -1.099 18.667 hybrid contribution -0.643 0.391 0.474 0.889 sum 17.814 -2.173 -0.625 17.957 Atomic orbital electron populations 1.69741 1.08738 1.31097 1.38475 1.26569 0.95217 1.03377 0.91002 0.85630 0.79038 0.77890 0.79281 1.18797 1.19832 1.19191 1.19173 0.93901 0.95652 1.41880 0.91954 1.18592 0.94312 0.95091 0.93996 1.21327 0.92835 1.00968 1.00706 1.21122 0.96775 1.01334 1.01572 1.18234 0.86626 0.93423 0.95575 1.43855 1.04159 1.37528 1.50473 1.21737 0.88898 0.91431 0.93325 1.21951 0.94613 1.00753 0.98825 1.23344 0.96492 0.99948 0.98746 1.23342 0.99307 1.00656 0.94645 1.21576 0.91672 1.03074 0.97727 1.66600 1.04617 1.25077 1.28729 1.22170 0.91122 1.02770 1.00254 0.89745 0.85583 0.84053 0.76764 0.89515 0.91611 0.91369 0.84255 0.83417 0.89612 0.89899 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.39 13.93 21.82 0.30 -47.08 16 2 C 0.05 2.84 5.41 85.22 0.46 3.30 16 3 Si 0.96 44.66 24.52 68.60 1.68 46.34 16 4 H -0.26 -11.85 6.71 99.48 0.67 -11.19 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -13.11 6.85 99.48 0.68 -12.42 16 7 C -0.47 -26.81 9.58 23.39 0.22 -26.59 16 8 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 9 C -0.01 -0.75 5.12 -21.18 -0.11 -0.86 16 10 C -0.13 -5.97 9.88 22.64 0.22 -5.74 16 11 C -0.18 -7.31 9.16 22.23 0.20 -7.11 16 12 C 0.30 12.20 7.64 133.32 1.02 13.22 16 13 N -0.72 -22.81 5.32 -319.08 -1.70 -24.51 16 14 C 0.15 3.70 3.11 46.11 0.14 3.84 16 15 C -0.12 -2.81 6.55 30.56 0.20 -2.61 16 16 C -0.17 -2.94 10.78 26.29 0.28 -2.66 16 17 C -0.16 -2.55 10.78 26.27 0.28 -2.27 16 18 C -0.10 -1.89 6.54 30.53 0.20 -1.69 16 19 N -0.53 -25.40 10.37 -191.20 -1.98 -27.39 16 20 C -0.01 -0.36 8.37 85.36 0.71 0.35 16 21 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 22 H 0.13 5.22 8.06 -2.91 -0.02 5.20 16 23 H 0.14 4.54 6.19 -2.91 -0.02 4.52 16 24 H 0.40 11.84 8.51 -92.71 -0.79 11.05 16 25 H 0.09 2.14 6.48 -2.39 -0.02 2.13 16 26 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 27 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.49 7.78 -2.39 -0.02 1.47 16 32 H 0.12 6.40 4.72 -2.91 -0.01 6.38 16 Total: -1.00 -62.06 266.29 2.43 -59.63 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.28 Total: 21.82 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 3.85 Total: -28.82 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -3.38 Total: -98.98 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.68 Total: 46.34 kcal Total: -62.06 2.43 -59.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380027974.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.946 kcal (2) G-P(sol) polarization free energy of solvation -62.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds