Wall clock time and date at job start Mon Mar 30 2020 02:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 S 1.81401 * 109.47211 * 2 1 4 4 C 1.81391 * 103.00228 * 179.97438 * 3 2 1 5 5 C 1.53011 * 109.47443 * 179.97438 * 4 3 2 6 6 O 1.42890 * 109.47283 * 179.97438 * 5 4 3 7 7 C 1.42900 * 114.00097 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47433 * 179.97438 * 7 6 5 9 9 C 1.50697 * 115.55403 * 294.87900 * 8 7 6 10 10 H 1.07995 * 120.00264 * 99.47893 * 9 8 7 11 11 C 1.37879 * 119.99779 * 279.20205 * 9 8 7 12 12 N 1.31514 * 120.00065 * 355.32933 * 11 9 8 13 13 Si 1.86799 * 120.00299 * 175.32772 * 11 9 8 14 14 H 1.48503 * 109.46706 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47335 * 119.99939 * 13 11 9 16 16 H 1.48501 * 109.47479 * 240.00550 * 13 11 9 17 17 C 1.53003 * 117.51711 * 80.58021 * 8 7 6 18 18 C 1.52999 * 60.00279 * 107.47740 * 17 8 7 19 19 H 1.08995 * 109.47626 * 299.99762 * 1 2 3 20 20 H 1.08997 * 109.47283 * 60.00267 * 1 2 3 21 21 H 1.09004 * 109.46849 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47750 * 240.00352 * 2 1 3 23 23 H 1.09003 * 109.47107 * 120.00148 * 2 1 3 24 24 H 1.08999 * 109.47225 * 60.00443 * 4 3 2 25 25 H 1.09000 * 109.47847 * 299.99844 * 4 3 2 26 26 H 1.08999 * 109.46493 * 60.00063 * 5 4 3 27 27 H 1.09000 * 109.46527 * 300.00720 * 5 4 3 28 28 H 1.09006 * 109.46783 * 60.00073 * 7 6 5 29 29 H 1.09000 * 109.47314 * 300.00395 * 7 6 5 30 30 H 0.96998 * 120.00374 * 179.97438 * 12 11 9 31 31 H 1.08998 * 117.49928 * 214.97028 * 17 8 7 32 32 H 1.09005 * 117.49765 * 359.97438 * 17 8 7 33 33 H 1.08999 * 117.50409 * 252.51047 * 18 17 8 34 34 H 1.09006 * 117.51633 * 107.47728 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9370 1.5059 0.0008 5 6 4.6064 2.8818 0.0002 6 8 6.0262 2.7207 0.0014 7 6 6.7509 3.9523 0.0005 8 6 8.2527 3.6605 0.0025 9 6 8.7803 2.9768 1.2375 10 1 8.9520 1.9106 1.2329 11 6 9.0493 3.7134 2.3716 12 7 8.9334 5.0232 2.3477 13 14 9.5784 2.8511 3.9419 14 1 9.6327 1.3857 3.7076 15 1 10.9223 3.3375 4.3451 16 1 8.6014 3.1444 5.0210 17 6 8.9057 3.3056 -1.3349 18 6 9.1693 4.6691 -0.6928 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 4.2405 0.9543 -0.8890 25 1 4.2399 0.9545 0.8910 26 1 4.3029 3.4337 0.8898 27 1 4.3035 3.4327 -0.8902 28 1 6.4916 4.5271 0.8896 29 1 6.4929 4.5250 -0.8904 30 1 9.1223 5.5415 3.1456 31 1 9.7169 2.5777 -1.3214 32 1 8.2652 3.2797 -2.2165 33 1 8.7024 5.5405 -1.1519 34 1 10.1539 4.8385 -0.2566 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381984776.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:58 Heat of formation + Delta-G solvation = -52.198977 kcal Electronic energy + Delta-G solvation = -13843.576515 eV Core-core repulsion = 11481.633427 eV Total energy + Delta-G solvation = -2361.943088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.35528 -37.49757 -34.00439 -33.66594 -32.39934 -28.07791 -26.90259 -24.96625 -23.36736 -22.85551 -21.09841 -18.32412 -17.48551 -17.14318 -16.99765 -16.58468 -15.92309 -15.73860 -15.21571 -15.02467 -14.48228 -14.28180 -13.54964 -13.25908 -13.03818 -12.86332 -12.66837 -12.43210 -12.39158 -12.25499 -12.23559 -12.02074 -11.29751 -11.00131 -10.97582 -10.48353 -10.37602 -9.99261 -8.75395 -8.11390 -6.20929 0.50760 1.39008 1.41496 1.52726 1.55979 2.42907 2.90999 3.17763 3.58854 3.84807 3.95525 4.02906 4.08951 4.31059 4.34184 4.49356 4.52826 4.54873 4.66769 4.73455 4.82671 4.87593 4.90945 4.92052 4.99852 5.23312 5.23480 5.58051 5.62950 5.78251 6.35326 6.49961 6.82842 7.46131 8.97495 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029166 B = 0.005520 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.786375 B = 5071.084185 C = 5672.385968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 S -0.287 6.287 4 C -0.073 4.073 5 C 0.075 3.925 6 O -0.389 6.389 7 C 0.122 3.878 8 C 0.006 3.994 9 C -0.500 4.500 10 H 0.046 0.954 11 C 0.024 3.976 12 N -0.909 5.909 13 Si 0.949 3.051 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.280 1.280 17 C -0.183 4.183 18 C -0.149 4.149 19 H 0.060 0.940 20 H 0.063 0.937 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.025 0.975 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.485 -7.452 -5.010 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.228 4.228 3 S -0.063 6.063 4 C -0.221 4.221 5 C -0.003 4.003 6 O -0.309 6.309 7 C 0.045 3.955 8 C 0.006 3.994 9 C -0.538 4.538 10 H 0.064 0.936 11 C -0.176 4.176 12 N -0.547 5.547 13 Si 0.775 3.225 14 H -0.195 1.195 15 H -0.204 1.204 16 H -0.206 1.206 17 C -0.220 4.220 18 C -0.187 4.187 19 H 0.079 0.921 20 H 0.082 0.918 21 H 0.112 0.888 22 H 0.111 0.889 23 H 0.106 0.894 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.956 -6.552 -4.895 16.176 hybrid contribution 1.129 -0.863 1.025 1.752 sum -12.827 -7.415 -3.871 15.313 Atomic orbital electron populations 1.21528 0.90779 1.03851 1.02988 1.23435 1.01045 0.92416 1.05929 1.86820 1.04442 1.16730 1.98266 1.23067 0.92865 1.00012 1.06156 1.22065 0.81845 0.95718 1.00646 1.87889 1.16423 1.31309 1.95302 1.21886 0.91923 0.84352 0.97303 1.18911 0.88845 1.00227 0.91414 1.20642 1.43121 0.93380 0.96620 0.93574 1.25645 0.95225 0.95410 1.01326 1.70099 1.49680 1.05688 1.29255 0.85647 0.77873 0.79016 0.79986 1.19493 1.20391 1.20620 1.22934 1.03590 0.98490 0.97017 1.22449 1.00711 0.91859 1.03639 0.92054 0.91776 0.88753 0.88935 0.89393 0.88688 0.89734 0.93872 0.92286 0.95648 0.94401 0.93086 0.90483 0.89122 0.90308 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.92 71.98 0.71 -1.08 16 2 C -0.08 -1.39 6.66 71.98 0.48 -0.91 16 3 S -0.29 -7.24 21.74 -56.49 -1.23 -8.47 16 4 C -0.07 -2.11 6.31 71.99 0.45 -1.65 16 5 C 0.08 2.62 5.95 71.99 0.43 3.05 16 6 O -0.39 -17.21 10.27 -148.98 -1.53 -18.74 16 7 C 0.12 5.74 5.76 71.98 0.41 6.16 16 8 C 0.01 0.33 1.61 -52.93 -0.09 0.25 16 9 C -0.50 -28.36 8.75 25.60 0.22 -28.14 16 10 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 11 C 0.02 1.33 5.44 84.66 0.46 1.79 16 12 N -0.91 -52.43 12.86 21.45 0.28 -52.15 16 13 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 C -0.18 -8.07 9.95 30.59 0.30 -7.76 16 18 C -0.15 -7.05 9.39 30.60 0.29 -6.76 16 19 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 20 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 21 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 24 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.04 1.59 8.09 -2.39 -0.02 1.57 16 30 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 33 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.06 3.31 8.14 -2.38 -0.02 3.29 16 Total: -1.00 -61.74 303.67 4.26 -57.47 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.04 Total: 10.54 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 3.68 Total: -35.07 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.28 Total: -52.15 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -1.53 Total: -18.74 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: -7.24 SS G_CDS: -1.23 Total: -8.47 kcal Total: -61.74 4.26 -57.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381984776.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.276 kcal (2) G-P(sol) polarization free energy of solvation -61.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds