Wall clock time and date at job start Mon Mar 30 2020 02:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81402 * 102.99486 * 2 1 4 4 C 1.53006 * 109.46850 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46951 * 180.02562 * 4 3 2 6 6 O 1.42906 * 109.46630 * 179.97438 * 5 4 3 7 7 C 1.42901 * 113.99458 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47004 * 179.97438 * 7 6 5 9 9 C 1.50699 * 115.55413 * 294.87593 * 8 7 6 10 10 H 1.08002 * 120.00022 * 99.47192 * 9 8 7 11 11 C 1.37876 * 120.00005 * 279.20430 * 9 8 7 12 12 N 1.31515 * 119.99897 * 355.32736 * 11 9 8 13 13 Si 1.86803 * 119.99877 * 175.32796 * 11 9 8 14 14 H 1.48495 * 109.47030 * 60.00341 * 13 11 9 15 15 H 1.48500 * 109.46719 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47330 * 299.99922 * 13 11 9 17 17 C 1.53007 * 117.51434 * 80.57293 * 8 7 6 18 18 C 1.53001 * 117.50113 * 149.20128 * 8 7 6 19 19 H 1.09000 * 109.46708 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.46895 * 299.99541 * 1 2 3 21 21 H 1.08990 * 109.47358 * 60.00139 * 1 2 3 22 22 H 1.09000 * 109.47043 * 60.00333 * 3 2 1 23 23 H 1.09002 * 109.47460 * 299.99868 * 3 2 1 24 24 H 1.09002 * 109.47174 * 59.99665 * 4 3 2 25 25 H 1.09002 * 109.46769 * 300.00031 * 4 3 2 26 26 H 1.09000 * 109.47065 * 59.99999 * 5 4 3 27 27 H 1.08996 * 109.46933 * 299.99498 * 5 4 3 28 28 H 1.09004 * 109.46946 * 60.00243 * 7 6 5 29 29 H 1.09000 * 109.47492 * 300.00071 * 7 6 5 30 30 H 0.97002 * 119.99638 * 179.97438 * 12 11 9 31 31 H 1.08996 * 117.50056 * 214.96776 * 17 8 7 32 32 H 1.09001 * 117.49737 * 0.02562 * 17 8 7 33 33 H 1.09005 * 117.49767 * 359.97438 * 18 8 7 34 34 H 1.09001 * 117.49973 * 144.97471 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9401 -0.0006 5 6 4.0863 3.4309 0.0000 6 8 5.5063 3.5919 0.0000 7 6 5.9366 4.9546 0.0000 8 6 7.4657 5.0065 0.0006 9 6 8.1343 4.4572 1.2344 10 1 8.5403 3.4564 1.2284 11 6 8.2326 5.2342 2.3692 12 7 7.8262 6.4848 2.3470 13 14 8.9429 4.5105 3.9380 14 1 10.3362 4.0612 3.6892 15 1 8.9395 5.5432 5.0052 16 1 8.1183 3.3523 4.3666 17 6 8.1803 4.8082 -1.3377 18 6 8.1325 6.1955 -0.6941 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8031 2.2371 0.8900 23 1 1.8030 2.2372 -0.8900 24 1 4.1609 1.4705 -0.8908 25 1 4.1616 1.4704 0.8891 26 1 3.6678 3.8999 0.8904 27 1 3.6670 3.9009 -0.8895 28 1 5.5560 5.4558 0.8900 29 1 5.5560 5.4559 -0.8900 30 1 7.8950 7.0313 3.1455 31 1 9.1339 4.2805 -1.3258 32 1 7.5609 4.6411 -2.2190 33 1 7.4818 6.9405 -1.1520 34 1 9.0545 6.5807 -0.2585 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382939942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:40 Heat of formation + Delta-G solvation = -37.010863 kcal Electronic energy + Delta-G solvation = -13887.589740 eV Core-core repulsion = 11526.305258 eV Total energy + Delta-G solvation = -2361.284482 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.63433 -35.84716 -33.32148 -31.86784 -29.19357 -26.97238 -25.49946 -24.49190 -21.47807 -20.99013 -19.07632 -16.52744 -16.16671 -15.82278 -15.28289 -14.65000 -14.39053 -14.29378 -13.84112 -13.60481 -13.38059 -12.86327 -12.28910 -11.89746 -11.88444 -11.30515 -10.96495 -10.86957 -10.70643 -10.55300 -10.43289 -10.14737 -10.07538 -9.37400 -9.05795 -8.61808 -8.35059 -8.04954 -7.82236 -5.98120 -4.01519 1.51082 2.45523 3.36039 3.39478 3.44122 4.30654 4.47163 4.85641 4.90436 4.91313 5.15118 5.31688 5.34992 5.45347 5.49238 5.50339 5.74475 5.77216 6.15387 6.24105 6.31584 6.37641 6.45082 6.73409 6.76868 6.85296 7.13092 7.48490 7.55699 7.94935 8.16869 8.52621 8.98661 9.62741 11.11242 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.005294 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.648420 B = 5288.211797 C = 5892.429578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.264 6.264 3 C -0.079 4.079 4 C -0.102 4.102 5 C 0.067 3.933 6 O -0.371 6.371 7 C 0.110 3.890 8 C 0.043 3.957 9 C -0.481 4.481 10 H 0.060 0.940 11 C 0.067 3.933 12 N -0.886 5.886 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.206 4.206 18 C -0.151 4.151 19 H 0.099 0.901 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.718 -6.732 -4.531 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.227 4.227 4 C -0.141 4.141 5 C -0.012 4.012 6 O -0.290 6.290 7 C 0.033 3.967 8 C 0.043 3.957 9 C -0.518 4.518 10 H 0.078 0.922 11 C -0.135 4.135 12 N -0.524 5.524 13 Si 0.718 3.282 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.243 4.243 18 C -0.189 4.189 19 H 0.118 0.882 20 H 0.094 0.906 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.949 -7.595 -4.406 14.829 hybrid contribution -0.789 1.052 0.901 1.594 sum -12.738 -6.543 -3.505 14.743 Atomic orbital electron populations 1.23365 0.94638 1.06335 1.04802 1.87014 1.06766 1.11933 1.98072 1.23309 1.00695 0.93752 1.04966 1.21184 0.91359 0.96866 1.04666 1.22235 0.84885 0.94800 0.99277 1.87956 1.18170 1.27760 1.95111 1.22159 0.96377 0.80631 0.97484 1.18727 0.88227 0.97984 0.90804 1.20365 1.36658 0.99855 0.94970 0.92196 1.24974 0.95238 0.94645 0.98616 1.70002 1.47415 1.06335 1.28642 0.86681 0.79676 0.78849 0.82960 1.20238 1.21383 1.20122 1.22927 1.02364 1.01402 0.97608 1.22533 1.02740 0.89930 1.03652 0.88214 0.90562 0.90617 0.89899 0.90030 0.90321 0.90013 0.93966 0.94472 0.93011 0.96690 0.93123 0.90434 0.91693 0.92038 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.76 101.05 1.09 0.11 16 2 S -0.26 -3.12 22.38 -107.50 -2.41 -5.52 16 3 C -0.08 -0.91 5.94 37.16 0.22 -0.69 16 4 C -0.10 -1.48 5.59 -26.73 -0.15 -1.63 16 5 C 0.07 1.13 5.94 37.16 0.22 1.35 16 6 O -0.37 -8.25 10.27 -35.23 -0.36 -8.61 16 7 C 0.11 2.58 5.76 37.16 0.21 2.79 16 8 C 0.04 1.10 1.61 -155.66 -0.25 0.85 16 9 C -0.48 -13.59 8.75 -34.44 -0.30 -13.89 16 10 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 11 C 0.07 1.88 5.44 -17.82 -0.10 1.78 16 12 N -0.89 -25.33 12.86 55.43 0.71 -24.62 16 13 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C -0.21 -4.70 9.96 -26.73 -0.27 -4.97 16 18 C -0.15 -3.62 9.39 -26.73 -0.25 -3.87 16 19 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 20 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 23 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.01 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -29.63 303.71 -7.96 -37.59 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.88 Total: -1.84 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 0.43 Total: -18.17 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.71 Total: -24.62 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.36 Total: -8.61 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.41 Total: -5.52 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.63 -7.96 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382939942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.578 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds