Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00301 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21281 * 120.00220 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00080 * 180.02562 * 12 11 10 15 15 H 1.09003 * 109.46670 * 15.00179 * 14 12 11 16 16 F 1.39901 * 109.47120 * 255.00511 * 14 12 11 17 17 C 1.52995 * 109.47196 * 135.00109 * 14 12 11 18 18 C 1.53935 * 113.73093 * 161.72879 * 17 14 12 19 19 N 1.47959 * 86.17943 * 221.91943 * 18 17 14 20 20 C 1.47958 * 90.76445 * 24.69297 * 19 18 17 21 21 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 23 23 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 24 24 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 25 25 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 26 26 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 27 27 H 1.08998 * 112.94145 * 293.43558 * 17 14 12 28 28 H 1.08994 * 113.76057 * 336.24093 * 18 17 14 29 29 H 1.09000 * 113.75972 * 107.60749 * 18 17 14 30 30 H 1.00899 * 111.00775 * 271.79577 * 19 18 17 31 31 H 1.09001 * 113.76537 * 220.99388 * 20 19 18 32 32 H 1.08999 * 113.76069 * 89.62246 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5126 -4.9309 -0.0020 12 6 2.1864 -6.0980 -0.0076 13 8 3.3993 -6.0981 -0.0117 14 6 1.4329 -7.4032 -0.0087 15 1 0.3907 -7.2207 -0.2706 16 9 1.4997 -7.9813 1.2636 17 6 2.0578 -8.3520 -1.0334 18 6 1.6795 -9.8290 -0.8215 19 7 3.0969 -10.1319 -1.1189 20 6 3.4978 -8.7738 -0.6898 21 1 -0.4850 0.8400 0.0004 22 1 0.6246 -2.5564 -0.8919 23 1 0.6240 -2.5575 0.8881 24 1 2.8712 -3.6048 0.8890 25 1 2.8725 -3.6040 -0.8909 26 1 0.5425 -4.9308 -0.0028 27 1 1.9345 -8.0088 -2.0606 28 1 1.3853 -10.0646 0.2012 29 1 0.9826 -10.2150 -1.5654 30 1 3.2403 -10.2550 -2.1100 31 1 4.2536 -8.3166 -1.3284 32 1 3.7354 -8.7008 0.3715 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388793812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -85.605007 kcal Electronic energy + Delta-G solvation = -15851.855766 eV Core-core repulsion = 12954.543658 eV Total energy + Delta-G solvation = -2897.312107 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.01449 -40.91423 -39.88675 -36.67148 -34.87934 -32.30565 -30.89187 -27.23684 -26.94795 -25.48810 -22.96191 -21.89455 -20.97568 -18.91514 -18.42257 -17.96833 -17.31931 -17.18422 -16.51164 -16.29528 -16.06433 -15.44723 -14.69937 -14.38697 -14.31883 -13.99621 -13.60337 -13.53281 -13.25243 -13.19688 -12.95367 -12.55632 -12.27436 -12.03915 -11.83391 -11.65527 -11.45982 -10.75830 -10.62112 -10.13375 -9.51850 -8.25746 -6.36162 1.34131 1.41448 1.41928 1.53151 1.97501 2.41037 2.94583 3.09473 3.21180 3.42123 3.61355 3.77957 3.98108 4.17834 4.44600 4.44811 4.51538 4.69772 4.77676 4.80842 4.82103 4.98326 5.17183 5.21058 5.44113 5.55535 5.76017 6.13695 6.39093 6.44338 6.76916 7.06925 7.33466 8.86005 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.067201 B = 0.004462 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.562968 B = 6273.908580 C = 6447.887984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.707 5.707 12 C 0.482 3.518 13 O -0.563 6.563 14 C 0.094 3.906 15 H 0.141 0.859 16 F -0.197 7.197 17 C -0.175 4.175 18 C 0.036 3.964 19 N -0.672 5.672 20 C 0.036 3.964 21 H 0.266 0.734 22 H 0.013 0.987 23 H 0.009 0.991 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.414 0.586 27 H 0.128 0.872 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.347 0.653 31 H 0.070 0.930 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.712 -16.495 -3.630 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.015 3.985 11 N -0.358 5.358 12 C 0.267 3.733 13 O -0.442 6.442 14 C 0.054 3.946 15 H 0.159 0.841 16 F -0.178 7.178 17 C -0.195 4.195 18 C -0.093 4.093 19 N -0.300 5.300 20 C -0.094 4.094 21 H 0.075 0.925 22 H 0.031 0.969 23 H 0.027 0.973 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.250 0.750 27 H 0.146 0.854 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.163 0.837 31 H 0.089 0.911 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.295 -16.950 -3.005 17.216 hybrid contribution -0.385 1.909 -0.470 2.004 sum -0.090 -15.040 -3.475 15.437 Atomic orbital electron populations 1.70044 1.07509 1.28041 1.50925 1.25842 0.95768 1.03023 0.94365 0.85465 0.78620 0.78548 0.78551 1.19687 1.20559 1.19168 1.21465 0.93586 0.91965 1.51671 0.92348 1.19147 0.94236 0.91658 0.96551 1.21288 0.95127 0.82020 1.00064 1.46249 1.11372 1.05575 1.72611 1.21530 0.88481 0.86582 0.76745 1.90685 1.15367 1.88024 1.50093 1.21574 1.03203 0.89047 0.80787 0.84115 1.92846 1.97903 1.85188 1.41839 1.24965 0.97661 0.96678 1.00198 1.23712 0.91804 0.89794 1.04018 1.65034 1.11153 1.30014 1.23756 1.23379 0.95509 0.88742 1.01754 0.92503 0.96914 0.97312 0.93624 0.92953 0.74955 0.85415 0.88440 0.87496 0.83696 0.91145 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.36 13.29 21.45 0.28 -53.08 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 42.97 29.54 68.60 2.03 44.99 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -30.08 9.11 25.60 0.23 -29.84 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.05 5.09 29.85 0.15 1.20 16 10 C 0.14 5.71 5.61 86.38 0.48 6.20 16 11 N -0.71 -22.75 5.56 -463.05 -2.57 -25.32 16 12 C 0.48 14.97 7.17 87.66 0.63 15.59 16 13 O -0.56 -21.75 15.26 -3.03 -0.05 -21.80 16 14 C 0.09 2.04 3.90 29.85 0.12 2.15 16 15 H 0.14 1.95 7.99 -2.39 -0.02 1.93 16 16 F -0.20 -5.09 15.47 44.97 0.70 -4.40 16 17 C -0.17 -3.27 3.85 -10.15 -0.04 -3.31 16 18 C 0.04 0.57 8.35 86.41 0.72 1.29 16 19 N -0.67 -13.03 8.55 -524.18 -4.48 -17.51 16 20 C 0.04 0.86 6.72 86.41 0.58 1.44 16 21 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 22 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.41 10.95 8.36 -92.70 -0.78 10.17 16 27 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.10 1.71 7.27 -2.39 -0.02 1.69 16 29 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.35 5.20 8.89 -89.69 -0.80 4.40 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.28 7.71 -2.39 -0.02 2.26 16 Total: -1.00 -66.46 277.51 -1.19 -67.65 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -0.44 Total: 13.78 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 3.34 Total: -4.32 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -6.77 Total: -95.91 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.70 Total: -4.40 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -66.46 -1.19 -67.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388793812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.953 kcal (2) G-P(sol) polarization free energy of solvation -66.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds