Wall clock time and date at job start Mon Mar 30 2020 03:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.52994 * 109.47226 * 294.30122 * 15 14 13 17 17 F 1.39905 * 109.47130 * 179.97438 * 16 15 14 18 18 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 19 19 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 20 20 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 22 22 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 23 23 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 24 24 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 25 25 H 1.09003 * 109.47098 * 54.30008 * 15 14 13 26 26 H 1.09003 * 109.47503 * 174.29843 * 15 14 13 27 27 H 1.08995 * 109.47765 * 299.99680 * 16 15 14 28 28 H 1.08999 * 109.47389 * 60.00185 * 16 15 14 29 29 H 1.08994 * 109.49159 * 303.15220 * 18 14 13 30 30 H 1.08999 * 109.51460 * 183.07675 * 18 14 13 31 31 H 1.08999 * 109.63197 * 350.89564 * 19 11 9 32 32 H 1.09008 * 109.62635 * 111.48013 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2539 -7.2709 1.2092 17 9 5.7767 -8.2662 2.0419 18 6 1.7771 -5.8907 0.8322 19 6 1.2249 -4.9226 -0.2195 20 1 -0.4850 0.8400 0.0004 21 1 3.7736 -3.9711 -1.0920 22 1 3.8007 -2.6840 0.1423 23 1 3.6077 -4.3397 1.9417 24 1 4.9637 -4.8053 0.8859 25 1 3.7085 -6.7119 2.6020 26 1 3.2217 -7.9531 1.4227 27 1 5.3303 -7.5893 0.1697 28 1 5.8170 -6.3481 1.3490 29 1 1.5327 -5.5231 1.8288 30 1 1.3329 -6.8757 0.6888 31 1 0.1612 -4.7606 -0.0453 32 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402667911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:01 Heat of formation + Delta-G solvation = -77.613957 kcal Electronic energy + Delta-G solvation = -16371.780421 eV Core-core repulsion = 13474.814831 eV Total energy + Delta-G solvation = -2896.965589 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.69115 -38.92874 -36.68400 -33.70610 -32.52002 -30.90014 -29.57621 -26.79733 -25.26726 -23.24639 -22.08051 -20.71364 -18.87370 -16.88373 -16.37388 -16.04814 -15.64528 -15.30810 -14.58826 -14.52342 -14.27090 -14.07590 -13.61630 -13.55306 -12.57847 -12.49328 -11.78357 -11.60335 -11.36002 -11.17413 -11.01296 -10.91107 -10.84641 -10.74777 -10.36215 -10.24915 -10.00169 -8.88464 -8.32965 -7.62643 -7.23578 -6.22990 -4.68494 3.12937 3.18175 3.19634 3.80161 4.06640 4.50608 4.55166 4.62664 4.75380 4.91911 5.25634 5.35002 5.45596 5.50288 5.66281 5.68441 5.79400 5.83096 5.87256 6.02583 6.19358 6.40753 6.49312 6.65915 7.08693 7.15999 7.41609 7.56802 8.09031 8.32154 8.98460 9.40104 10.53937 10.72413 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.043374 B = 0.006178 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.387589 B = 4531.296596 C = 5038.594752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.559 3.441 10 O -0.578 6.578 11 N -0.645 5.645 12 C 0.129 3.871 13 C 0.034 3.966 14 N -0.535 5.535 15 C 0.024 3.976 16 C 0.063 3.937 17 F -0.221 7.221 18 C 0.046 3.954 19 C 0.125 3.875 20 H 0.269 0.731 21 H 0.051 0.949 22 H 0.095 0.905 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 -9.645 1.431 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.365 3.635 10 O -0.461 6.461 11 N -0.384 5.384 12 C 0.004 3.996 13 C -0.095 4.095 14 N -0.260 5.260 15 C -0.105 4.105 16 C 0.008 3.992 17 F -0.202 7.202 18 C -0.082 4.082 19 C 0.000 4.000 20 H 0.080 0.920 21 H 0.069 0.931 22 H 0.113 0.887 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.415 -9.662 1.017 12.853 hybrid contribution 0.425 0.881 0.910 1.336 sum 8.839 -8.781 1.927 12.608 Atomic orbital electron populations 1.70002 1.07089 1.27463 1.35089 1.25727 0.94617 1.00306 0.92558 0.86446 0.79861 0.81074 0.79467 1.20521 1.19270 1.19202 1.20931 0.93525 0.89260 1.54465 0.90991 1.18258 0.86914 0.82191 0.76109 1.90589 1.14393 1.86073 1.55062 1.48257 1.04731 1.05859 1.79566 1.21571 0.82759 0.98587 0.96680 1.22797 0.98274 0.89279 0.99117 1.61884 1.05460 1.05844 1.52827 1.22599 0.95199 0.96931 0.95806 1.21988 0.94010 0.89385 0.93850 1.92746 1.88010 1.64562 1.74927 1.22531 0.86474 0.99957 0.99249 1.21215 0.97993 0.84353 0.96391 0.91993 0.93070 0.88650 0.94308 0.90648 0.94006 0.89908 0.89823 0.90656 0.94549 0.90681 0.89424 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.82 11.84 55.55 0.66 -22.16 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.55 -15.07 8.86 -35.63 -0.32 -15.39 16 8 H 0.07 1.79 5.74 -52.49 -0.30 1.49 16 9 C 0.56 15.83 7.63 -12.99 -0.10 15.73 16 10 O -0.58 -18.65 14.49 5.20 0.08 -18.57 16 11 N -0.65 -14.63 3.00 -173.84 -0.52 -15.15 16 12 C 0.13 2.35 6.50 -3.36 -0.02 2.33 16 13 C 0.03 0.51 5.48 -3.46 -0.02 0.49 16 14 N -0.53 -7.69 4.63 -234.02 -1.08 -8.78 16 15 C 0.02 0.28 5.42 -3.83 -0.02 0.26 16 16 C 0.06 0.66 7.48 37.15 0.28 0.94 16 17 F -0.22 -2.70 17.36 2.25 0.04 -2.66 16 18 C 0.05 0.74 5.62 -3.70 -0.02 0.72 16 19 C 0.12 2.45 6.61 -3.60 -0.02 2.42 16 20 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 21 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 22 H 0.10 1.80 5.46 -51.93 -0.28 1.51 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.08 0.91 6.16 -51.93 -0.32 0.59 16 25 H 0.04 0.52 8.12 -51.93 -0.42 0.09 16 26 H 0.08 0.92 7.97 -51.93 -0.41 0.50 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.73 6.40 -51.93 -0.33 0.40 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.00 7.99 -51.93 -0.41 0.59 16 31 H 0.09 1.90 7.04 -51.93 -0.37 1.53 16 32 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 265.17 15.07 4.00 4.00 Total: -1.00 -33.15 265.17 -6.30 -39.45 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.10 Total: -0.69 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.34 Total: 9.82 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.95 Total: -46.09 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.08 Total: -18.57 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.15 -6.30 -39.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402667911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.162 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds