Wall clock time and date at job start Mon Mar 30 2020 03:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.52994 * 109.47226 * 294.30122 * 15 14 13 17 17 F 1.39905 * 109.47130 * 179.97438 * 16 15 14 18 18 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 19 19 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 20 20 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 22 22 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 23 23 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 24 24 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 25 25 H 1.09003 * 109.47098 * 54.30008 * 15 14 13 26 26 H 1.09003 * 109.47503 * 174.29843 * 15 14 13 27 27 H 1.08995 * 109.47765 * 299.99680 * 16 15 14 28 28 H 1.08999 * 109.47389 * 60.00185 * 16 15 14 29 29 H 1.08994 * 109.49159 * 303.15220 * 18 14 13 30 30 H 1.08999 * 109.51460 * 183.07675 * 18 14 13 31 31 H 1.08999 * 109.63197 * 350.89564 * 19 11 9 32 32 H 1.09008 * 109.62635 * 111.48013 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2539 -7.2709 1.2092 17 9 5.7767 -8.2662 2.0419 18 6 1.7771 -5.8907 0.8322 19 6 1.2249 -4.9226 -0.2195 20 1 -0.4850 0.8400 0.0004 21 1 3.7736 -3.9711 -1.0920 22 1 3.8007 -2.6840 0.1423 23 1 3.6077 -4.3397 1.9417 24 1 4.9637 -4.8053 0.8859 25 1 3.7085 -6.7119 2.6020 26 1 3.2217 -7.9531 1.4227 27 1 5.3303 -7.5893 0.1697 28 1 5.8170 -6.3481 1.3490 29 1 1.5327 -5.5231 1.8288 30 1 1.3329 -6.8757 0.6888 31 1 0.1612 -4.7606 -0.0453 32 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402667911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:01 Heat of formation + Delta-G solvation = -102.228233 kcal Electronic energy + Delta-G solvation = -16372.847776 eV Core-core repulsion = 13474.814831 eV Total energy + Delta-G solvation = -2898.032945 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.57076 -40.46456 -38.46286 -35.39024 -34.61926 -32.32347 -30.82347 -28.67230 -26.80016 -24.64558 -23.33695 -22.20239 -20.58216 -18.55603 -17.89347 -17.20929 -17.04224 -16.42263 -16.23369 -15.94886 -15.78656 -15.54841 -14.98214 -14.80016 -14.41599 -13.83871 -13.38197 -13.26017 -12.96557 -12.70224 -12.68502 -12.34605 -12.23980 -12.01251 -11.87393 -11.85659 -11.40101 -10.91807 -9.80606 -9.57403 -9.04120 -8.29343 -6.84633 1.40478 1.43785 1.55418 2.23563 2.45090 2.60959 2.93073 3.58705 3.69103 3.88671 3.93200 4.08681 4.18303 4.32824 4.37466 4.41748 4.52400 4.66551 4.70408 4.82066 4.88174 4.94903 5.00557 5.18624 5.37705 5.72184 5.90852 5.97170 6.13066 6.40086 6.87408 7.41685 8.45643 8.66763 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.043374 B = 0.006178 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.387589 B = 4531.296596 C = 5038.594752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.277 1.277 5 H -0.254 1.254 6 H -0.252 1.252 7 C -0.570 4.570 8 H 0.096 0.904 9 C 0.539 3.461 10 O -0.635 6.635 11 N -0.650 5.650 12 C 0.123 3.877 13 C 0.042 3.958 14 N -0.532 5.532 15 C 0.025 3.975 16 C 0.067 3.933 17 F -0.230 7.230 18 C 0.058 3.942 19 C 0.122 3.878 20 H 0.274 0.726 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.022 0.978 24 H 0.115 0.885 25 H 0.038 0.962 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.017 0.983 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.965 -10.038 1.349 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.201 1.201 5 H -0.177 1.177 6 H -0.175 1.175 7 C -0.606 4.606 8 H 0.114 0.886 9 C 0.346 3.654 10 O -0.522 6.522 11 N -0.387 5.387 12 C 0.000 4.000 13 C -0.087 4.087 14 N -0.257 5.257 15 C -0.103 4.103 16 C 0.012 3.988 17 F -0.212 7.212 18 C -0.070 4.070 19 C -0.002 4.002 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.105 0.895 23 H 0.041 0.959 24 H 0.133 0.867 25 H 0.056 0.944 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.036 0.964 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.254 -10.119 0.934 15.164 hybrid contribution -0.436 0.891 0.915 1.350 sum 10.819 -9.228 1.849 14.340 Atomic orbital electron populations 1.70190 1.09638 1.28976 1.36557 1.27013 0.95482 1.05016 0.91156 0.85093 0.78237 0.74717 0.80417 1.20149 1.17746 1.17543 1.21485 0.94875 0.89701 1.54504 0.88636 1.18702 0.86576 0.84245 0.75921 1.90535 1.16710 1.87414 1.57557 1.48156 1.06809 1.05473 1.78258 1.21786 0.79875 0.99562 0.98761 1.22723 1.00413 0.88707 0.96815 1.61854 1.04235 1.06018 1.53581 1.22646 0.96393 0.96267 0.95007 1.22018 0.92819 0.89708 0.94295 1.92734 1.88014 1.65057 1.75353 1.22357 0.87897 1.00153 0.96628 1.21324 0.96337 0.84032 0.98531 0.91639 0.91423 0.89460 0.95948 0.86730 0.94414 0.88746 0.88429 0.89457 0.96430 0.87576 0.92628 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.64 11.84 21.83 0.26 -50.39 16 2 C 0.03 1.57 5.50 85.30 0.47 2.04 16 3 Si 1.00 40.34 29.56 68.60 2.03 42.37 16 4 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 7 C -0.57 -31.89 8.86 24.83 0.22 -31.67 16 8 H 0.10 4.70 5.74 -2.91 -0.02 4.68 16 9 C 0.54 31.61 7.63 86.36 0.66 32.27 16 10 O -0.63 -43.15 14.49 -4.31 -0.06 -43.22 16 11 N -0.65 -29.83 3.00 -822.12 -2.47 -32.29 16 12 C 0.12 4.33 6.50 86.50 0.56 4.90 16 13 C 0.04 1.16 5.48 86.54 0.47 1.63 16 14 N -0.53 -13.84 4.63 -894.31 -4.14 -17.98 16 15 C 0.03 0.52 5.42 86.30 0.47 0.99 16 16 C 0.07 1.15 7.48 71.98 0.54 1.69 16 17 F -0.23 -4.92 17.36 44.97 0.78 -4.14 16 18 C 0.06 1.78 5.62 86.38 0.49 2.27 16 19 C 0.12 4.81 6.61 86.35 0.57 5.38 16 20 H 0.27 15.28 8.29 -92.71 -0.77 14.51 16 21 H 0.07 2.16 8.14 -2.38 -0.02 2.15 16 22 H 0.09 3.18 5.46 -2.39 -0.01 3.17 16 23 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.11 2.30 6.16 -2.38 -0.01 2.28 16 25 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 26 H 0.09 1.76 7.97 -2.39 -0.02 1.74 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.31 6.40 -2.39 -0.02 1.29 16 29 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 2.59 7.99 -2.39 -0.02 2.57 16 31 H 0.06 2.54 7.04 -2.39 -0.02 2.52 16 32 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -75.26 265.17 1.96 -73.30 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.12 Total: 12.87 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 4.45 Total: 19.48 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -6.35 Total: -100.66 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.06 Total: -43.22 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.78 Total: -4.14 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -75.26 1.96 -73.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402667911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.930 kcal (2) G-P(sol) polarization free energy of solvation -75.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds