Wall clock time and date at job start Mon Mar 30 2020 03:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46974 * 63.47130 * 3 2 1 5 5 C 1.36931 * 119.99950 * 264.30006 * 4 3 2 6 6 H 1.08004 * 120.00233 * 197.21730 * 5 4 3 7 7 C 1.38808 * 120.00152 * 17.22777 * 5 4 3 8 8 N 1.31617 * 120.00057 * 22.05262 * 7 5 4 9 9 Si 1.86800 * 120.00092 * 202.05346 * 7 5 4 10 10 H 1.48497 * 109.47306 * 89.99933 * 9 7 5 11 11 H 1.48503 * 109.47021 * 209.99804 * 9 7 5 12 12 H 1.48497 * 109.47010 * 329.99683 * 9 7 5 13 13 C 1.46508 * 119.99639 * 84.30721 * 4 3 2 14 14 C 1.52990 * 109.46872 * 269.99419 * 13 4 3 15 15 C 1.50702 * 109.47229 * 180.02562 * 14 13 4 16 16 C 1.38236 * 119.99690 * 89.99701 * 15 14 13 17 17 C 1.38235 * 119.99593 * 179.97438 * 16 15 14 18 18 C 1.38232 * 120.00564 * 359.97438 * 17 16 15 19 19 C 1.38238 * 119.99763 * 0.27911 * 18 17 16 20 20 C 1.38232 * 120.00258 * 269.98437 * 15 14 13 21 21 H 1.08994 * 109.47014 * 303.47038 * 3 2 1 22 22 H 1.09002 * 109.46815 * 183.47439 * 3 2 1 23 23 H 0.96998 * 120.00588 * 180.02562 * 8 7 5 24 24 H 1.08999 * 109.46660 * 149.99605 * 13 4 3 25 25 H 1.08998 * 109.47149 * 29.99969 * 13 4 3 26 26 H 1.08999 * 109.47326 * 60.00593 * 14 13 4 27 27 H 1.08998 * 109.47682 * 300.00223 * 14 13 4 28 28 H 1.07999 * 120.00284 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.99676 * 180.02562 * 17 16 15 30 30 H 1.08000 * 120.00387 * 179.97438 * 18 17 16 31 31 H 1.07997 * 120.00486 * 179.72494 * 19 18 17 32 32 H 1.08000 * 119.99918 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0966 -0.6160 -1.2358 5 6 3.4365 -1.9424 -1.2511 6 1 4.0462 -2.3344 -2.0518 7 6 2.9971 -2.7833 -0.2379 8 7 1.9402 -2.4575 0.4757 9 14 3.9059 -4.3771 0.1131 10 1 4.9697 -4.1293 1.1190 11 1 2.9515 -5.3854 0.6401 12 1 4.5189 -4.8838 -1.1410 13 6 3.2217 0.1865 -2.4551 14 6 1.9122 0.1234 -3.2437 15 6 2.0411 0.9484 -4.4983 16 6 2.5021 0.3659 -5.6641 17 6 2.6197 1.1225 -6.8150 18 6 2.2759 2.4613 -6.8003 19 6 1.8198 3.0450 -5.6331 20 6 1.6980 2.2873 -4.4833 21 1 2.9716 -0.5659 0.8572 22 1 2.9709 1.0266 0.0623 23 1 1.6334 -3.0449 1.1840 24 1 4.0337 -0.2066 -3.0670 25 1 3.4359 1.2214 -2.1885 26 1 1.1003 0.5164 -2.6318 27 1 1.6981 -0.9116 -3.5103 28 1 2.7704 -0.6802 -5.6757 29 1 2.9796 0.6674 -7.7260 30 1 2.3682 3.0525 -7.6994 31 1 1.5554 4.0920 -5.6204 32 1 1.3372 2.7422 -3.5726 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584607764.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:05 Heat of formation + Delta-G solvation = 66.962520 kcal Electronic energy + Delta-G solvation = -15198.171717 eV Core-core repulsion = 12738.244659 eV Total energy + Delta-G solvation = -2459.927058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.02655 -36.59146 -34.37690 -32.99275 -31.05369 -30.65600 -28.18520 -26.68072 -24.05481 -22.31542 -21.46935 -20.22262 -17.46086 -16.58130 -15.97748 -15.13898 -14.93708 -14.79772 -13.84629 -13.74039 -13.19483 -12.93620 -12.70848 -12.32843 -12.08163 -11.88369 -11.51917 -11.21423 -11.02403 -10.93198 -10.81716 -10.68403 -10.38562 -9.97418 -9.88383 -9.84318 -8.79227 -8.70529 -8.40249 -7.17960 -5.98036 -3.35392 1.61456 1.61900 3.32583 3.40254 3.42089 4.02555 4.13583 4.37790 4.49027 5.10325 5.10590 5.18820 5.22414 5.33635 5.60866 5.66839 5.71106 5.80949 5.89604 6.20124 6.23438 6.23640 6.40725 6.55604 6.58852 6.70028 6.70998 6.97340 7.01350 7.07301 7.27432 7.65300 8.13274 8.95249 9.19902 9.61167 10.05725 11.10513 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.006819 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.511966 B = 4104.942865 C = 4718.204815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.249 3.751 3 C 0.256 3.744 4 N -0.582 5.582 5 C -0.264 4.264 6 H 0.081 0.919 7 C 0.004 3.996 8 N -0.901 5.901 9 Si 0.908 3.092 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.279 1.279 13 C 0.155 3.845 14 C -0.109 4.109 15 C -0.062 4.062 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.139 4.139 19 C -0.121 4.121 20 C -0.122 4.122 21 H 0.112 0.888 22 H 0.059 0.941 23 H 0.260 0.740 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 8.275 -9.043 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.069 4.069 3 C 0.126 3.874 4 N -0.301 5.301 5 C -0.393 4.393 6 H 0.099 0.901 7 C -0.195 4.195 8 N -0.544 5.544 9 Si 0.738 3.262 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.204 1.204 13 C 0.028 3.972 14 C -0.149 4.149 15 C -0.063 4.063 16 C -0.138 4.138 17 C -0.138 4.138 18 C -0.157 4.157 19 C -0.139 4.139 20 C -0.140 4.140 21 H 0.130 0.870 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.562 8.149 -8.894 12.332 hybrid contribution 0.552 -1.104 0.139 1.242 sum 3.115 7.045 -8.755 11.661 Atomic orbital electron populations 1.80817 1.14460 1.13449 1.10293 1.30551 0.96367 0.88897 0.91110 1.18340 0.80476 0.96204 0.92424 1.44234 1.73938 1.07960 1.04011 1.19301 1.26059 0.84255 1.09696 0.90128 1.24911 0.96254 0.98266 1.00102 1.69917 1.21445 1.38853 1.24205 0.86197 0.79121 0.82582 0.78340 1.21178 1.21927 1.20437 1.20968 0.94081 0.94549 0.87567 1.21420 1.01560 0.99170 0.92717 1.20221 0.96088 0.94251 0.95696 1.21125 1.00127 1.00071 0.92507 1.21096 1.00374 0.94320 0.98058 1.21020 1.01465 0.95303 0.97925 1.21085 1.00130 0.99459 0.93198 1.21098 1.00806 0.93941 0.98189 0.87022 0.92336 0.93002 0.92658 0.93629 0.91746 0.90879 0.86101 0.86592 0.86770 0.86621 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.99 18.54 42.16 0.78 -12.21 16 2 C 0.25 5.91 12.61 -20.76 -0.26 5.65 16 3 C 0.26 5.42 5.45 -6.83 -0.04 5.38 16 4 N -0.58 -12.91 2.50 -176.58 -0.44 -13.35 16 5 C -0.26 -6.53 9.66 -15.06 -0.15 -6.68 16 6 H 0.08 1.96 7.90 -52.48 -0.41 1.54 16 7 C 0.00 0.09 4.85 -17.43 -0.08 0.01 16 8 N -0.90 -24.46 9.50 55.49 0.53 -23.93 16 9 Si 0.91 20.51 29.61 -169.99 -5.03 15.48 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 C 0.16 2.89 5.68 -4.04 -0.02 2.87 16 14 C -0.11 -2.02 5.53 -27.89 -0.15 -2.18 16 15 C -0.06 -0.99 5.13 -104.62 -0.54 -1.53 16 16 C -0.12 -1.77 9.70 -39.58 -0.38 -2.15 16 17 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 18 C -0.14 -1.69 10.05 -39.58 -0.40 -2.09 16 19 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 20 C -0.12 -1.79 9.70 -39.58 -0.38 -2.17 16 21 H 0.11 2.54 6.45 -51.93 -0.33 2.20 16 22 H 0.06 1.01 7.97 -51.93 -0.41 0.59 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.06 1.01 8.02 -51.93 -0.42 0.59 16 25 H 0.05 0.76 7.95 -51.93 -0.41 0.35 16 26 H 0.06 1.32 7.15 -51.93 -0.37 0.95 16 27 H 0.07 1.51 8.08 -51.93 -0.42 1.09 16 28 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 30 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 282.05 15.07 4.25 4.25 Total: -1.00 -28.89 282.05 -7.15 -36.04 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.03 Total: 0.49 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -3.20 Total: -6.77 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.87 Total: -49.49 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.89 -7.15 -36.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584607764.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.002 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds