Wall clock time and date at job start Mon Mar 30 2020 03:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46974 * 63.47130 * 3 2 1 5 5 C 1.36931 * 119.99950 * 264.30006 * 4 3 2 6 6 H 1.08004 * 120.00233 * 197.21730 * 5 4 3 7 7 C 1.38808 * 120.00152 * 17.22777 * 5 4 3 8 8 N 1.31617 * 120.00057 * 22.05262 * 7 5 4 9 9 Si 1.86800 * 120.00092 * 202.05346 * 7 5 4 10 10 H 1.48497 * 109.47306 * 89.99933 * 9 7 5 11 11 H 1.48503 * 109.47021 * 209.99804 * 9 7 5 12 12 H 1.48497 * 109.47010 * 329.99683 * 9 7 5 13 13 C 1.46508 * 119.99639 * 84.30721 * 4 3 2 14 14 C 1.52990 * 109.46872 * 269.99419 * 13 4 3 15 15 C 1.50702 * 109.47229 * 180.02562 * 14 13 4 16 16 C 1.38236 * 119.99690 * 89.99701 * 15 14 13 17 17 C 1.38235 * 119.99593 * 179.97438 * 16 15 14 18 18 C 1.38232 * 120.00564 * 359.97438 * 17 16 15 19 19 C 1.38238 * 119.99763 * 0.27911 * 18 17 16 20 20 C 1.38232 * 120.00258 * 269.98437 * 15 14 13 21 21 H 1.08994 * 109.47014 * 303.47038 * 3 2 1 22 22 H 1.09002 * 109.46815 * 183.47439 * 3 2 1 23 23 H 0.96998 * 120.00588 * 180.02562 * 8 7 5 24 24 H 1.08999 * 109.46660 * 149.99605 * 13 4 3 25 25 H 1.08998 * 109.47149 * 29.99969 * 13 4 3 26 26 H 1.08999 * 109.47326 * 60.00593 * 14 13 4 27 27 H 1.08998 * 109.47682 * 300.00223 * 14 13 4 28 28 H 1.07999 * 120.00284 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.99676 * 180.02562 * 17 16 15 30 30 H 1.08000 * 120.00387 * 179.97438 * 18 17 16 31 31 H 1.07997 * 120.00486 * 179.72494 * 19 18 17 32 32 H 1.08000 * 119.99918 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0966 -0.6160 -1.2358 5 6 3.4365 -1.9424 -1.2511 6 1 4.0462 -2.3344 -2.0518 7 6 2.9971 -2.7833 -0.2379 8 7 1.9402 -2.4575 0.4757 9 14 3.9059 -4.3771 0.1131 10 1 4.9697 -4.1293 1.1190 11 1 2.9515 -5.3854 0.6401 12 1 4.5189 -4.8838 -1.1410 13 6 3.2217 0.1865 -2.4551 14 6 1.9122 0.1234 -3.2437 15 6 2.0411 0.9484 -4.4983 16 6 2.5021 0.3659 -5.6641 17 6 2.6197 1.1225 -6.8150 18 6 2.2759 2.4613 -6.8003 19 6 1.8198 3.0450 -5.6331 20 6 1.6980 2.2873 -4.4833 21 1 2.9716 -0.5659 0.8572 22 1 2.9709 1.0266 0.0623 23 1 1.6334 -3.0449 1.1840 24 1 4.0337 -0.2066 -3.0670 25 1 3.4359 1.2214 -2.1885 26 1 1.1003 0.5164 -2.6318 27 1 1.6981 -0.9116 -3.5103 28 1 2.7704 -0.6802 -5.6757 29 1 2.9796 0.6674 -7.7260 30 1 2.3682 3.0525 -7.6994 31 1 1.5554 4.0920 -5.6204 32 1 1.3372 2.7422 -3.5726 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584607764.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:05 Heat of formation + Delta-G solvation = 52.494133 kcal Electronic energy + Delta-G solvation = -15198.799114 eV Core-core repulsion = 12738.244659 eV Total energy + Delta-G solvation = -2460.554455 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13951 -38.30364 -36.23731 -34.51531 -32.73710 -31.69360 -29.64072 -28.43753 -25.66106 -23.36201 -22.96380 -21.56682 -19.32683 -17.95228 -17.39702 -16.94227 -16.19891 -15.94675 -15.54205 -15.39621 -14.31152 -14.23139 -14.16616 -13.85401 -13.73277 -13.45648 -13.20545 -12.99760 -12.73708 -12.63537 -12.20236 -12.06119 -11.89008 -11.77440 -11.55940 -11.43409 -10.64864 -9.74885 -9.60185 -8.98553 -7.93172 -5.30335 0.53948 0.57255 1.52694 1.55638 1.62483 2.29396 2.51766 2.61340 2.96204 3.27080 3.67226 3.92728 4.01548 4.16761 4.25799 4.36269 4.37864 4.68122 4.74688 4.74893 4.83939 4.95958 5.08587 5.19819 5.27050 5.28174 5.44158 5.65649 5.68415 5.69036 5.87127 6.21328 6.25786 7.05051 7.33243 7.77072 8.17686 9.13415 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.006819 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.511966 B = 4104.942865 C = 4718.204815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C 0.262 3.738 3 C 0.254 3.746 4 N -0.593 5.593 5 C -0.261 4.261 6 H 0.083 0.917 7 C -0.044 4.044 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.279 1.279 11 H -0.309 1.309 12 H -0.272 1.272 13 C 0.156 3.844 14 C -0.091 4.091 15 C -0.084 4.084 16 C -0.135 4.135 17 C -0.121 4.121 18 C -0.133 4.133 19 C -0.120 4.120 20 C -0.134 4.134 21 H 0.098 0.902 22 H 0.107 0.893 23 H 0.249 0.751 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.117 0.883 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 9.780 -10.868 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.231 5.231 2 C -0.056 4.056 3 C 0.124 3.876 4 N -0.313 5.313 5 C -0.390 4.390 6 H 0.100 0.900 7 C -0.240 4.240 8 N -0.576 5.576 9 Si 0.795 3.205 10 H -0.206 1.206 11 H -0.236 1.236 12 H -0.197 1.197 13 C 0.030 3.970 14 C -0.132 4.132 15 C -0.084 4.084 16 C -0.153 4.153 17 C -0.139 4.139 18 C -0.151 4.151 19 C -0.138 4.138 20 C -0.152 4.152 21 H 0.115 0.885 22 H 0.125 0.875 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.135 0.865 29 H 0.160 0.840 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.952 9.673 -10.750 14.992 hybrid contribution 0.144 -1.494 0.571 1.606 sum 4.096 8.179 -10.180 13.686 Atomic orbital electron populations 1.80802 1.15774 1.14932 1.11637 1.31158 0.96915 0.87639 0.89889 1.18601 0.78871 0.98487 0.91624 1.44450 1.73651 1.07563 1.05590 1.19578 1.24927 0.85447 1.09062 0.89951 1.25510 0.96957 1.00970 1.00540 1.70064 1.23001 1.39694 1.24883 0.85287 0.77710 0.79276 0.78221 1.20576 1.23631 1.19697 1.21091 0.94105 0.95373 0.86398 1.21098 1.00534 0.97626 0.93895 1.20018 0.98613 0.94804 0.95002 1.21216 1.00698 1.00341 0.93017 1.21416 0.99594 0.94706 0.98135 1.21461 0.99526 0.95214 0.98871 1.21422 0.99179 1.00670 0.92540 1.21202 1.01168 0.93530 0.99314 0.88453 0.87513 0.94115 0.92164 0.91052 0.94165 0.94057 0.86451 0.84003 0.83469 0.83894 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.58 18.54 20.01 0.37 -28.21 16 2 C 0.26 12.52 12.61 89.44 1.13 13.64 16 3 C 0.25 10.59 5.45 84.57 0.46 11.05 16 4 N -0.59 -25.97 2.50 -712.57 -1.78 -27.75 16 5 C -0.26 -12.82 9.66 84.03 0.81 -12.01 16 6 H 0.08 3.96 7.90 -2.91 -0.02 3.94 16 7 C -0.04 -2.28 4.85 84.86 0.41 -1.86 16 8 N -0.93 -51.46 9.50 21.65 0.21 -51.26 16 9 Si 0.97 42.51 29.61 68.60 2.03 44.55 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.31 -14.31 7.11 99.48 0.71 -13.61 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 C 0.16 5.67 5.68 86.37 0.49 6.16 16 14 C -0.09 -3.45 5.53 29.85 0.16 -3.29 16 15 C -0.08 -2.63 5.13 -19.87 -0.10 -2.73 16 16 C -0.13 -3.81 9.70 22.27 0.22 -3.59 16 17 C -0.12 -2.73 10.05 22.27 0.22 -2.51 16 18 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 19 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 20 C -0.13 -3.72 9.70 22.27 0.22 -3.50 16 21 H 0.10 4.41 6.45 -2.39 -0.02 4.40 16 22 H 0.11 3.41 7.97 -2.39 -0.02 3.39 16 23 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 24 H 0.06 2.13 8.02 -2.39 -0.02 2.11 16 25 H 0.07 2.23 7.95 -2.39 -0.02 2.21 16 26 H 0.04 1.68 7.15 -2.39 -0.02 1.66 16 27 H 0.04 1.77 8.08 -2.39 -0.02 1.75 16 28 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.12 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -62.52 282.05 6.39 -56.12 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.10 Total: 10.13 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 4.47 Total: -3.58 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -1.21 Total: -107.22 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.55 kcal Total: -62.52 6.39 -56.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584607764.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.617 kcal (2) G-P(sol) polarization free energy of solvation -62.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds