Wall clock time and date at job start Mon Mar 30 2020 03:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38237 * 119.99868 * 2 1 4 4 C 1.38238 * 119.99809 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00260 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00274 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.47239 * 89.99972 * 6 5 4 8 8 C 1.36933 * 119.99652 * 269.72587 * 7 6 5 9 9 H 1.08004 * 120.00488 * 19.57866 * 8 7 6 10 10 C 1.38818 * 119.99926 * 199.57826 * 8 7 6 11 11 N 1.31616 * 119.99888 * 22.31242 * 10 8 7 12 12 Si 1.86801 * 120.00136 * 202.30274 * 10 8 7 13 13 H 1.48500 * 109.46954 * 90.00256 * 12 10 8 14 14 H 1.48496 * 109.47194 * 210.00342 * 12 10 8 15 15 H 1.48497 * 109.47011 * 330.00253 * 12 10 8 16 16 C 1.46502 * 120.00240 * 89.99759 * 7 6 5 17 17 C 1.47200 * 109.46792 * 83.94649 * 16 7 6 18 18 N 7.82322 * 160.61833 * 145.94791 * 2 1 3 19 19 C 1.38239 * 119.99723 * 0.24830 * 5 4 3 20 20 C 1.38227 * 120.00063 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.46877 * 89.99649 * 1 2 3 22 22 H 1.08991 * 109.46862 * 209.99551 * 1 2 3 23 23 H 1.08997 * 109.46736 * 330.00362 * 1 2 3 24 24 H 1.08000 * 120.00101 * 359.97438 * 3 2 1 25 25 H 1.07999 * 119.99808 * 179.97438 * 4 3 2 26 26 H 1.08994 * 109.47341 * 329.99544 * 6 5 4 27 27 H 1.09004 * 109.46963 * 209.99497 * 6 5 4 28 28 H 0.96998 * 120.00500 * 179.97438 * 11 10 8 29 29 H 1.08999 * 109.47095 * 203.94262 * 16 7 6 30 30 H 1.08999 * 109.47200 * 323.94491 * 16 7 6 31 31 H 1.08001 * 119.99795 * 179.73030 * 19 5 4 32 32 H 1.07999 * 120.00070 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2718 0.0001 0.0005 6 6 5.7787 0.0001 0.0005 7 7 6.2671 0.0001 1.3817 8 6 6.5007 1.1860 2.0253 9 1 6.0449 2.0958 1.6633 10 6 7.3233 1.2189 3.1430 11 7 8.2093 0.2649 3.3363 12 14 7.1732 2.6172 4.3724 13 1 6.1843 2.2524 5.4185 14 1 8.4939 2.8645 5.0045 15 1 6.7219 3.8461 3.6716 16 6 6.5112 -1.2686 2.0724 17 6 7.8519 -1.7668 1.7242 18 7 8.8869 -2.1510 1.4537 19 6 3.5806 -1.1971 -0.0052 20 6 2.1982 -1.1971 0.0005 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3633 0.8900 0.5138 24 1 1.6582 2.1325 -0.0004 25 1 4.1205 2.1325 0.0001 26 1 6.1421 0.8899 -0.5133 27 1 6.1421 -0.8900 -0.5132 28 1 8.7844 0.2880 4.1170 29 1 6.4498 -1.1136 3.1496 30 1 5.7617 -1.9987 1.7670 31 1 4.1206 -2.1324 -0.0096 32 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584647735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:14 Heat of formation + Delta-G solvation = 66.393516 kcal Electronic energy + Delta-G solvation = -15307.649199 eV Core-core repulsion = 12847.697466 eV Total energy + Delta-G solvation = -2459.951732 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.02062 -36.37914 -34.37321 -32.87946 -31.04605 -30.49545 -28.20939 -26.70942 -24.63248 -22.24813 -21.81606 -20.16200 -17.41575 -16.22620 -15.29080 -15.19983 -14.94213 -14.66361 -13.85456 -13.64341 -13.49123 -13.00916 -12.63288 -12.27717 -12.19759 -11.74029 -11.52500 -11.36911 -11.20140 -10.91882 -10.80691 -10.74694 -10.45697 -10.16609 -10.00621 -9.89246 -8.74215 -8.47800 -8.06223 -7.16709 -5.97004 -3.36677 1.78630 1.85156 3.33165 3.40993 3.42434 4.03241 4.31050 4.37270 4.49859 5.12540 5.14733 5.22289 5.39724 5.49940 5.55362 5.58247 5.67035 5.70237 5.91584 5.97344 5.99238 6.16177 6.43887 6.53328 6.54014 6.63679 6.89389 6.95039 6.98089 7.22057 7.47582 7.66582 8.13516 8.94961 9.19782 9.60922 10.06098 11.11360 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.008269 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.816745 B = 3385.139681 C = 4191.927007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.124 4.124 4 C -0.098 4.098 5 C -0.081 4.081 6 C 0.177 3.823 7 N -0.575 5.575 8 C -0.264 4.264 9 H 0.079 0.921 10 C 0.006 3.994 11 N -0.899 5.899 12 Si 0.906 3.094 13 H -0.285 1.285 14 H -0.292 1.292 15 H -0.279 1.279 16 C 0.259 3.741 17 C 0.249 3.751 18 N -0.507 5.507 19 C -0.112 4.112 20 C -0.125 4.125 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.112 0.888 25 H 0.119 0.881 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.260 0.740 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 -0.752 -5.232 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.106 4.106 3 C -0.143 4.143 4 C -0.116 4.116 5 C -0.084 4.084 6 C 0.050 3.950 7 N -0.295 5.295 8 C -0.393 4.393 9 H 0.097 0.903 10 C -0.193 4.193 11 N -0.542 5.542 12 Si 0.736 3.264 13 H -0.212 1.212 14 H -0.219 1.219 15 H -0.204 1.204 16 C 0.129 3.871 17 C -0.070 4.070 18 N -0.188 5.188 19 C -0.130 4.130 20 C -0.143 4.143 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.131 0.869 25 H 0.137 0.863 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.262 -1.301 -5.487 13.496 hybrid contribution -0.265 1.010 0.994 1.442 sum -12.526 -0.291 -4.493 13.311 Atomic orbital electron populations 1.20718 0.92026 1.02210 1.01589 1.19759 0.95409 0.93464 1.01960 1.20951 0.94418 0.96968 1.01914 1.21033 0.93560 0.98110 0.98931 1.20937 0.98596 0.92602 0.96269 1.19879 0.87510 1.00624 0.86956 1.43953 1.74293 1.02018 1.09197 1.19223 1.24262 0.87125 1.08687 0.90316 1.24911 0.95576 0.98259 1.00574 1.69907 1.20219 1.35283 1.28804 0.86227 0.76974 0.81613 0.81614 1.21212 1.21897 1.20382 1.18196 0.83249 0.86031 0.99623 1.30516 0.95969 0.89759 0.90708 1.80831 1.12465 1.13491 1.12052 1.21017 0.93759 0.97765 1.00492 1.20901 0.94322 0.96938 1.02139 0.91879 0.92040 0.92031 0.86946 0.86320 0.91960 0.93288 0.93000 0.87448 0.92397 0.86597 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.11 -1.42 5.88 -104.62 -0.62 -2.04 16 3 C -0.12 -1.79 9.70 -39.58 -0.38 -2.17 16 4 C -0.10 -1.58 9.70 -39.58 -0.38 -1.97 16 5 C -0.08 -1.37 5.46 -104.63 -0.57 -1.94 16 6 C 0.18 3.33 5.80 -5.19 -0.03 3.30 16 7 N -0.57 -12.88 2.47 -177.95 -0.44 -13.32 16 8 C -0.26 -6.59 9.63 -15.06 -0.14 -6.74 16 9 H 0.08 1.93 7.92 -52.48 -0.42 1.51 16 10 C 0.01 0.15 4.82 -17.43 -0.08 0.07 16 11 N -0.90 -24.73 9.59 55.49 0.53 -24.19 16 12 Si 0.91 20.80 29.61 -169.99 -5.03 15.77 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 C 0.26 5.58 5.41 -6.83 -0.04 5.54 16 17 C 0.25 5.99 13.56 -20.74 -0.28 5.71 16 18 N -0.51 -13.11 18.54 42.18 0.78 -12.33 16 19 C -0.11 -1.69 9.70 -39.58 -0.38 -2.08 16 20 C -0.12 -1.72 9.70 -39.58 -0.38 -2.10 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 23 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 24 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 25 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 26 H 0.06 1.19 7.98 -51.93 -0.41 0.77 16 27 H 0.05 0.88 8.01 -51.93 -0.42 0.46 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.11 2.49 6.60 -51.93 -0.34 2.15 16 30 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -29.39 284.41 -6.91 -36.30 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.10 Total: -1.35 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.94 Total: -5.16 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.87 Total: -49.85 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.39 -6.91 -36.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584647735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.696 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds