Wall clock time and date at job start Mon Mar 30 2020 03:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38237 * 119.99868 * 2 1 4 4 C 1.38238 * 119.99809 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00260 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00274 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.47239 * 89.99972 * 6 5 4 8 8 C 1.36933 * 119.99652 * 269.72587 * 7 6 5 9 9 H 1.08004 * 120.00488 * 19.57866 * 8 7 6 10 10 C 1.38818 * 119.99926 * 199.57826 * 8 7 6 11 11 N 1.31616 * 119.99888 * 22.31242 * 10 8 7 12 12 Si 1.86801 * 120.00136 * 202.30274 * 10 8 7 13 13 H 1.48500 * 109.46954 * 90.00256 * 12 10 8 14 14 H 1.48496 * 109.47194 * 210.00342 * 12 10 8 15 15 H 1.48497 * 109.47011 * 330.00253 * 12 10 8 16 16 C 1.46502 * 120.00240 * 89.99759 * 7 6 5 17 17 C 1.47200 * 109.46792 * 83.94649 * 16 7 6 18 18 N 7.82322 * 160.61833 * 145.94791 * 2 1 3 19 19 C 1.38239 * 119.99723 * 0.24830 * 5 4 3 20 20 C 1.38227 * 120.00063 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.46877 * 89.99649 * 1 2 3 22 22 H 1.08991 * 109.46862 * 209.99551 * 1 2 3 23 23 H 1.08997 * 109.46736 * 330.00362 * 1 2 3 24 24 H 1.08000 * 120.00101 * 359.97438 * 3 2 1 25 25 H 1.07999 * 119.99808 * 179.97438 * 4 3 2 26 26 H 1.08994 * 109.47341 * 329.99544 * 6 5 4 27 27 H 1.09004 * 109.46963 * 209.99497 * 6 5 4 28 28 H 0.96998 * 120.00500 * 179.97438 * 11 10 8 29 29 H 1.08999 * 109.47095 * 203.94262 * 16 7 6 30 30 H 1.08999 * 109.47200 * 323.94491 * 16 7 6 31 31 H 1.08001 * 119.99795 * 179.73030 * 19 5 4 32 32 H 1.07999 * 120.00070 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2718 0.0001 0.0005 6 6 5.7787 0.0001 0.0005 7 7 6.2671 0.0001 1.3817 8 6 6.5007 1.1860 2.0253 9 1 6.0449 2.0958 1.6633 10 6 7.3233 1.2189 3.1430 11 7 8.2093 0.2649 3.3363 12 14 7.1732 2.6172 4.3724 13 1 6.1843 2.2524 5.4185 14 1 8.4939 2.8645 5.0045 15 1 6.7219 3.8461 3.6716 16 6 6.5112 -1.2686 2.0724 17 6 7.8519 -1.7668 1.7242 18 7 8.8869 -2.1510 1.4537 19 6 3.5806 -1.1971 -0.0052 20 6 2.1982 -1.1971 0.0005 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5137 23 1 -0.3633 0.8900 0.5138 24 1 1.6582 2.1325 -0.0004 25 1 4.1205 2.1325 0.0001 26 1 6.1421 0.8899 -0.5133 27 1 6.1421 -0.8900 -0.5132 28 1 8.7844 0.2880 4.1170 29 1 6.4498 -1.1136 3.1496 30 1 5.7617 -1.9987 1.7670 31 1 4.1206 -2.1324 -0.0096 32 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584647735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:14 Heat of formation + Delta-G solvation = 51.720778 kcal Electronic energy + Delta-G solvation = -15308.285456 eV Core-core repulsion = 12847.697466 eV Total energy + Delta-G solvation = -2460.587990 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.19108 -38.08868 -36.22207 -34.31057 -32.68697 -31.61718 -29.60311 -28.40447 -26.03407 -23.44304 -23.36434 -21.37964 -19.29116 -17.86348 -17.06037 -16.53787 -16.16738 -15.81522 -15.60857 -15.36756 -14.42537 -14.16448 -14.09277 -13.88483 -13.48244 -13.30434 -13.09980 -12.89723 -12.80301 -12.55670 -12.40850 -12.07701 -11.93394 -11.86654 -11.67757 -11.56887 -10.63869 -9.60652 -9.25431 -8.98041 -7.93751 -5.32778 0.63660 0.71943 1.50245 1.53720 1.60299 2.27018 2.48678 2.59002 3.05384 3.26079 3.86998 3.88439 4.09976 4.16818 4.33621 4.35068 4.46870 4.77746 4.82044 4.87896 4.95220 5.04300 5.07625 5.13520 5.20721 5.40425 5.46068 5.67196 5.74224 5.87914 6.00201 6.24545 6.35801 7.03452 7.30625 7.74857 8.16893 9.12334 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.008269 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.816745 B = 3385.139681 C = 4191.927007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.132 4.132 4 C -0.115 4.115 5 C -0.100 4.100 6 C 0.179 3.821 7 N -0.586 5.586 8 C -0.257 4.257 9 H 0.080 0.920 10 C -0.042 4.042 11 N -0.929 5.929 12 Si 0.962 3.038 13 H -0.283 1.283 14 H -0.306 1.306 15 H -0.271 1.271 16 C 0.261 3.739 17 C 0.261 3.739 18 N -0.546 5.546 19 C -0.117 4.117 20 C -0.127 4.127 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.131 0.869 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.250 0.750 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.563 -0.892 -5.631 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.150 4.150 4 C -0.134 4.134 5 C -0.103 4.103 6 C 0.054 3.946 7 N -0.306 5.306 8 C -0.386 4.386 9 H 0.097 0.903 10 C -0.238 4.238 11 N -0.575 5.575 12 Si 0.791 3.209 13 H -0.209 1.209 14 H -0.234 1.234 15 H -0.196 1.196 16 C 0.131 3.869 17 C -0.057 4.057 18 N -0.228 5.228 19 C -0.136 4.136 20 C -0.145 4.145 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.149 0.851 25 H 0.128 0.872 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.931 -1.430 -5.917 16.125 hybrid contribution 0.444 1.065 1.022 1.541 sum -14.488 -0.365 -4.894 15.296 Atomic orbital electron populations 1.20779 0.89454 1.03308 1.02865 1.20210 0.97362 0.92942 0.99957 1.21201 0.93728 0.98460 1.01568 1.21104 0.94683 0.97664 0.99931 1.20657 0.96997 0.93772 0.98841 1.19913 0.89130 1.00491 0.85046 1.44163 1.74213 1.01569 1.10645 1.19477 1.22739 0.88158 1.08265 0.90254 1.25492 0.95840 1.00272 1.02168 1.70039 1.21428 1.37114 1.28898 0.85343 0.75999 0.79777 0.79758 1.20945 1.23368 1.19571 1.18379 0.82988 0.86707 0.98780 1.31119 0.96239 0.88723 0.89616 1.80821 1.13611 1.14904 1.13442 1.21195 0.94700 0.97493 1.00206 1.21242 0.93848 0.98323 1.01108 0.90391 0.90749 0.91221 0.85095 0.87162 0.92986 0.92486 0.94086 0.89041 0.88094 0.85421 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 71.24 0.71 -1.04 16 2 C -0.10 -2.47 5.88 -19.87 -0.12 -2.59 16 3 C -0.13 -3.48 9.70 22.27 0.22 -3.26 16 4 C -0.12 -3.61 9.70 22.27 0.22 -3.39 16 5 C -0.10 -3.26 5.46 -19.87 -0.11 -3.37 16 6 C 0.18 6.66 5.80 85.63 0.50 7.16 16 7 N -0.59 -25.93 2.47 -716.91 -1.77 -27.70 16 8 C -0.26 -12.75 9.63 84.04 0.81 -11.94 16 9 H 0.08 3.86 7.92 -2.91 -0.02 3.84 16 10 C -0.04 -2.18 4.82 84.86 0.41 -1.77 16 11 N -0.93 -51.76 9.59 21.65 0.21 -51.55 16 12 Si 0.96 43.00 29.61 68.60 2.03 45.03 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.31 -14.29 7.11 99.48 0.71 -13.59 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 16 C 0.26 11.04 5.41 84.57 0.46 11.50 16 17 C 0.26 12.52 13.56 89.43 1.21 13.73 16 18 N -0.55 -28.39 18.54 20.01 0.37 -28.02 16 19 C -0.12 -3.28 9.70 22.27 0.22 -3.06 16 20 C -0.13 -3.07 9.70 22.27 0.22 -2.86 16 21 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 23 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 24 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 25 H 0.11 3.51 8.06 -2.91 -0.02 3.49 16 26 H 0.05 1.99 7.98 -2.39 -0.02 1.97 16 27 H 0.06 1.99 8.01 -2.39 -0.02 1.97 16 28 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.09 4.22 6.60 -2.39 -0.02 4.21 16 30 H 0.10 3.37 8.12 -2.39 -0.02 3.35 16 31 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -62.28 284.41 6.68 -55.61 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.10 Total: 7.54 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.74 Total: -0.90 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -1.19 Total: -107.27 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -62.28 6.68 -55.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584647735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.327 kcal (2) G-P(sol) polarization free energy of solvation -62.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds