Wall clock time and date at job start Mon Mar 30 2020 03:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51293 * 137.55774 * 2 1 4 4 N 1.47532 * 87.64566 * 205.72693 * 3 2 1 5 5 C 1.39859 * 111.00175 * 222.06998 * 4 3 2 6 6 C 1.39601 * 119.84280 * 229.93188 * 5 4 3 7 7 C 1.38048 * 120.54911 * 180.27595 * 6 5 4 8 8 C 1.38736 * 120.22164 * 359.44634 * 7 6 5 9 9 N 1.38865 * 120.16699 * 180.27609 * 8 7 6 10 10 C 1.41562 * 119.67338 * 0.56910 * 8 7 6 11 11 C 1.41025 * 120.27013 * 179.68457 * 10 8 7 12 12 H 1.08004 * 119.99795 * 330.40136 * 11 10 8 13 13 C 1.39888 * 120.00050 * 150.39880 * 11 10 8 14 14 N 1.30899 * 120.00035 * 161.27857 * 13 11 10 15 15 Si 1.86798 * 120.00014 * 341.28366 * 13 11 10 16 16 H 1.48500 * 109.47095 * 92.43948 * 15 13 11 17 17 H 1.48502 * 109.47152 * 212.44294 * 15 13 11 18 18 H 1.48501 * 109.46988 * 332.43703 * 15 13 11 19 19 C 1.38001 * 119.83608 * 49.95000 * 5 4 3 20 20 C 1.47541 * 87.57830 * 333.66248 * 4 3 2 21 21 H 1.08001 * 120.00379 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.99708 * 179.97438 * 1 2 3 23 23 H 1.09002 * 113.51843 * 91.03119 * 3 2 1 24 24 H 1.09003 * 113.58544 * 320.43251 * 3 2 1 25 25 H 1.08000 * 119.72097 * 359.97438 * 6 5 4 26 26 H 1.07999 * 119.89018 * 179.70092 * 7 6 5 27 27 H 0.96998 * 120.00336 * 187.60048 * 9 8 7 28 28 H 0.97004 * 119.99688 * 7.59748 * 9 8 7 29 29 H 0.96993 * 120.00141 * 179.97438 * 14 13 11 30 30 H 1.08008 * 120.11852 * 359.97438 * 19 5 4 31 31 H 1.08996 * 113.52086 * 141.03215 * 20 4 3 32 32 H 1.08995 * 113.52063 * 271.64353 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4265 1.0210 0.0000 4 7 3.2779 0.0001 -0.6399 5 6 4.5623 0.0001 -0.0864 6 6 5.6792 0.0444 -0.9228 7 6 6.9537 0.0393 -0.3924 8 6 7.1379 0.0015 0.9822 9 7 8.4203 0.0021 1.5147 10 6 6.0120 -0.0441 1.8391 11 6 6.1847 -0.0896 3.2380 12 1 7.0646 -0.5537 3.6586 13 6 5.2165 0.4664 4.0808 14 7 5.1706 0.1207 5.3425 15 14 3.9890 1.7021 3.4057 16 1 2.7630 0.9906 2.9630 17 1 3.6379 2.6808 4.4658 18 1 4.5904 2.4171 2.2514 19 6 4.7195 -0.0441 1.2839 20 6 2.4264 -1.0209 -0.0001 21 1 -0.5401 0.9353 0.0004 22 1 -0.5399 -0.9353 -0.0004 23 1 2.7596 1.3013 0.9993 24 1 2.2286 1.8836 -0.6363 25 1 5.5450 0.0781 -1.9939 26 1 7.8102 0.0690 -1.0495 27 1 8.5506 -0.1352 2.4660 28 1 9.1860 0.1399 0.9352 29 1 4.4995 0.5065 5.9269 30 1 3.8531 -0.0782 1.9280 31 1 2.2277 -1.8828 -0.6370 32 1 2.7597 -1.3013 0.9991 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689020787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:20 Heat of formation + Delta-G solvation = 91.293098 kcal Electronic energy + Delta-G solvation = -15823.094964 eV Core-core repulsion = 13364.222959 eV Total energy + Delta-G solvation = -2458.872005 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26849 -37.55548 -33.62059 -33.44824 -31.09905 -30.43290 -27.37130 -25.70669 -25.25282 -23.73603 -21.56761 -19.45875 -17.96128 -17.28121 -16.43411 -16.00578 -15.35301 -14.81513 -14.72146 -14.46116 -13.41662 -13.13343 -13.00247 -12.72481 -12.38478 -11.91180 -11.81853 -11.50991 -10.96451 -10.78804 -10.62579 -10.26471 -10.01382 -9.77167 -9.30825 -9.24913 -9.08444 -8.20832 -7.68849 -6.91443 -6.52422 -4.32794 2.39580 2.59192 2.61747 3.04318 3.16797 3.27805 3.96108 4.43464 4.57487 4.65928 5.03233 5.25708 5.32649 5.82586 5.88671 5.91278 5.96856 6.01119 6.11070 6.31918 6.51501 6.54861 6.57214 6.81988 6.87053 7.05899 7.18700 7.31414 7.40937 7.69894 7.91792 8.11997 8.33812 8.40210 8.71248 8.86495 8.91182 10.11758 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.012817 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.206974 B = 2184.065248 C = 3202.054306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C 0.023 3.977 4 N -0.424 5.424 5 C 0.028 3.972 6 C -0.149 4.149 7 C -0.179 4.179 8 C 0.144 3.856 9 N -0.879 5.879 10 C 0.054 3.946 11 C -0.453 4.453 12 H 0.087 0.913 13 C 0.086 3.914 14 N -0.817 5.817 15 Si 0.902 3.098 16 H -0.268 1.268 17 H -0.292 1.292 18 H -0.246 1.246 19 C -0.242 4.242 20 C 0.031 3.969 21 H 0.105 0.895 22 H 0.106 0.894 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.396 0.604 28 H 0.381 0.619 29 H 0.283 0.717 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 1.013 -6.179 7.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.103 4.103 4 N -0.143 5.143 5 C -0.068 4.068 6 C -0.169 4.169 7 C -0.203 4.203 8 C 0.041 3.959 9 N -0.420 5.420 10 C 0.048 3.952 11 C -0.483 4.483 12 H 0.105 0.895 13 C -0.131 4.131 14 N -0.443 5.443 15 Si 0.730 3.270 16 H -0.195 1.195 17 H -0.219 1.219 18 H -0.170 1.170 19 C -0.264 4.264 20 C -0.096 4.096 21 H 0.123 0.877 22 H 0.124 0.876 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.225 0.775 28 H 0.207 0.793 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.474 1.010 -6.631 7.554 hybrid contribution -0.242 0.554 0.940 1.118 sum -3.717 1.564 -5.691 6.975 Atomic orbital electron populations 1.22695 0.93061 1.01892 1.03724 1.23102 0.94021 0.99004 0.98845 1.23430 0.90939 0.96206 0.99770 1.66818 0.99540 1.03392 1.44564 1.18786 0.89905 1.06449 0.91621 1.19916 0.90452 1.09254 0.97315 1.20036 0.96237 1.11546 0.92506 1.17995 0.85519 1.00835 0.91562 1.42014 1.04134 1.84807 1.11011 1.17238 0.89620 0.95097 0.93211 1.19045 1.06600 1.33587 0.89039 0.89499 1.25998 0.96537 0.96140 0.94471 1.69719 1.31975 1.36489 1.06102 0.86555 0.80498 0.80787 0.79202 1.19501 1.21932 1.16981 1.21100 0.96770 1.14821 0.93711 1.23320 0.90447 0.95938 0.99889 0.87730 0.87586 0.89678 0.89644 0.88141 0.88436 0.77506 0.79333 0.90712 0.87790 0.89547 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 14.71 29.01 0.43 -2.01 16 2 C -0.15 -2.52 7.52 -100.51 -0.76 -3.28 16 3 C 0.02 0.45 7.48 -9.24 -0.07 0.38 16 4 N -0.42 -8.63 6.47 -186.60 -1.21 -9.84 16 5 C 0.03 0.62 5.26 -83.77 -0.44 0.18 16 6 C -0.15 -3.22 9.96 -39.14 -0.39 -3.61 16 7 C -0.18 -3.75 9.87 -39.47 -0.39 -4.14 16 8 C 0.14 3.22 6.79 -83.23 -0.56 2.66 16 9 N -0.88 -16.60 8.96 32.75 0.29 -16.31 16 10 C 0.05 1.35 5.12 -106.66 -0.55 0.80 16 11 C -0.45 -11.91 8.98 -37.91 -0.34 -12.25 16 12 H 0.09 2.34 6.92 -52.48 -0.36 1.97 16 13 C 0.09 2.24 5.40 -17.33 -0.09 2.14 16 14 N -0.82 -21.78 13.93 55.55 0.77 -21.01 16 15 Si 0.90 20.97 22.91 -169.99 -3.89 17.08 16 16 H -0.27 -6.03 5.83 56.52 0.33 -5.70 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.25 -5.91 7.01 56.52 0.40 -5.52 16 19 C -0.24 -5.82 5.16 -38.75 -0.20 -6.02 16 20 C 0.03 0.57 7.47 -9.24 -0.07 0.51 16 21 H 0.10 1.26 8.06 -52.49 -0.42 0.84 16 22 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 23 H 0.09 1.78 3.66 -51.93 -0.19 1.59 16 24 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 26 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.40 7.53 7.11 -40.82 -0.29 7.24 16 28 H 0.38 5.89 8.84 -40.82 -0.36 5.53 16 29 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 30 H 0.10 2.54 2.90 -52.48 -0.15 2.39 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.09 1.79 6.08 -51.93 -0.32 1.48 16 LS Contribution 258.23 15.07 3.89 3.89 Total: -1.00 -27.83 258.23 -6.99 -34.82 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -3.42 Total: 16.00 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -3.43 Total: -24.63 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.14 Total: -47.15 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -3.89 Total: 17.08 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.83 -6.99 -34.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689020787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.115 kcal (2) G-P(sol) polarization free energy of solvation -27.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds