Wall clock time and date at job start Mon Mar 30 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51293 * 137.55774 * 2 1 4 4 N 1.47532 * 87.64566 * 205.72693 * 3 2 1 5 5 C 1.39859 * 111.00175 * 222.06998 * 4 3 2 6 6 C 1.39601 * 119.84280 * 229.93188 * 5 4 3 7 7 C 1.38048 * 120.54911 * 180.27595 * 6 5 4 8 8 C 1.38736 * 120.22164 * 359.44634 * 7 6 5 9 9 N 1.38865 * 120.16699 * 180.27609 * 8 7 6 10 10 C 1.41562 * 119.67338 * 0.56910 * 8 7 6 11 11 C 1.41025 * 120.27013 * 179.68457 * 10 8 7 12 12 H 1.08004 * 119.99795 * 330.40136 * 11 10 8 13 13 C 1.39888 * 120.00050 * 150.39880 * 11 10 8 14 14 N 1.30899 * 120.00035 * 161.27857 * 13 11 10 15 15 Si 1.86798 * 120.00014 * 341.28366 * 13 11 10 16 16 H 1.48500 * 109.47095 * 92.43948 * 15 13 11 17 17 H 1.48502 * 109.47152 * 212.44294 * 15 13 11 18 18 H 1.48501 * 109.46988 * 332.43703 * 15 13 11 19 19 C 1.38001 * 119.83608 * 49.95000 * 5 4 3 20 20 C 1.47541 * 87.57830 * 333.66248 * 4 3 2 21 21 H 1.08001 * 120.00379 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.99708 * 179.97438 * 1 2 3 23 23 H 1.09002 * 113.51843 * 91.03119 * 3 2 1 24 24 H 1.09003 * 113.58544 * 320.43251 * 3 2 1 25 25 H 1.08000 * 119.72097 * 359.97438 * 6 5 4 26 26 H 1.07999 * 119.89018 * 179.70092 * 7 6 5 27 27 H 0.96998 * 120.00336 * 187.60048 * 9 8 7 28 28 H 0.97004 * 119.99688 * 7.59748 * 9 8 7 29 29 H 0.96993 * 120.00141 * 179.97438 * 14 13 11 30 30 H 1.08008 * 120.11852 * 359.97438 * 19 5 4 31 31 H 1.08996 * 113.52086 * 141.03215 * 20 4 3 32 32 H 1.08995 * 113.52063 * 271.64353 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4265 1.0210 0.0000 4 7 3.2779 0.0001 -0.6399 5 6 4.5623 0.0001 -0.0864 6 6 5.6792 0.0444 -0.9228 7 6 6.9537 0.0393 -0.3924 8 6 7.1379 0.0015 0.9822 9 7 8.4203 0.0021 1.5147 10 6 6.0120 -0.0441 1.8391 11 6 6.1847 -0.0896 3.2380 12 1 7.0646 -0.5537 3.6586 13 6 5.2165 0.4664 4.0808 14 7 5.1706 0.1207 5.3425 15 14 3.9890 1.7021 3.4057 16 1 2.7630 0.9906 2.9630 17 1 3.6379 2.6808 4.4658 18 1 4.5904 2.4171 2.2514 19 6 4.7195 -0.0441 1.2839 20 6 2.4264 -1.0209 -0.0001 21 1 -0.5401 0.9353 0.0004 22 1 -0.5399 -0.9353 -0.0004 23 1 2.7596 1.3013 0.9993 24 1 2.2286 1.8836 -0.6363 25 1 5.5450 0.0781 -1.9939 26 1 7.8102 0.0690 -1.0495 27 1 8.5506 -0.1352 2.4660 28 1 9.1860 0.1399 0.9352 29 1 4.4995 0.5065 5.9269 30 1 3.8531 -0.0782 1.9280 31 1 2.2277 -1.8828 -0.6370 32 1 2.7597 -1.3013 0.9991 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689020787.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:19 Heat of formation + Delta-G solvation = 71.080259 kcal Electronic energy + Delta-G solvation = -15823.971458 eV Core-core repulsion = 13364.222959 eV Total energy + Delta-G solvation = -2459.748500 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.77987 -39.23761 -35.48535 -35.05395 -32.50102 -32.25627 -28.92711 -27.13458 -27.08755 -25.31688 -23.31986 -21.16580 -19.55959 -18.92159 -18.10920 -17.63366 -16.95388 -16.39716 -16.09970 -16.07618 -15.18060 -14.85898 -14.50540 -14.30179 -14.07791 -13.60367 -13.52231 -13.07264 -12.65009 -12.60296 -12.32951 -12.04190 -11.62331 -11.29235 -11.05996 -10.83465 -10.66151 -9.66731 -9.51558 -8.85407 -8.23023 -6.26921 0.79696 0.83260 1.17542 1.20416 1.31014 1.40570 2.07436 2.59670 3.22392 3.25850 3.46927 3.48703 3.93007 4.25394 4.35279 4.44726 4.56821 4.60758 4.66281 4.76660 4.91061 5.06313 5.08635 5.18078 5.35659 5.46017 5.61223 5.65146 5.85295 5.87686 6.16023 6.26046 6.51401 6.66595 6.83399 7.08764 7.39845 8.22741 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.012817 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.206974 B = 2184.065248 C = 3202.054306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.178 4.178 3 C 0.017 3.983 4 N -0.429 5.429 5 C 0.013 3.987 6 C -0.140 4.140 7 C -0.178 4.178 8 C 0.138 3.862 9 N -0.868 5.868 10 C 0.022 3.978 11 C -0.475 4.475 12 H 0.067 0.933 13 C 0.051 3.949 14 N -0.857 5.857 15 Si 0.949 3.051 16 H -0.261 1.261 17 H -0.282 1.282 18 H -0.261 1.261 19 C -0.240 4.240 20 C 0.029 3.971 21 H 0.128 0.872 22 H 0.131 0.869 23 H 0.061 0.939 24 H 0.099 0.901 25 H 0.123 0.877 26 H 0.133 0.867 27 H 0.395 0.605 28 H 0.399 0.601 29 H 0.288 0.712 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 1.365 -8.484 9.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.179 4.179 3 C -0.110 4.110 4 N -0.148 5.148 5 C -0.083 4.083 6 C -0.161 4.161 7 C -0.202 4.202 8 C 0.034 3.966 9 N -0.409 5.409 10 C 0.016 3.984 11 C -0.506 4.506 12 H 0.085 0.915 13 C -0.162 4.162 14 N -0.485 5.485 15 Si 0.776 3.224 16 H -0.188 1.188 17 H -0.209 1.209 18 H -0.185 1.185 19 C -0.262 4.262 20 C -0.098 4.098 21 H 0.146 0.854 22 H 0.149 0.851 23 H 0.079 0.921 24 H 0.117 0.883 25 H 0.141 0.859 26 H 0.151 0.849 27 H 0.223 0.777 28 H 0.229 0.771 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.656 1.361 -8.948 10.179 hybrid contribution 0.110 0.395 1.443 1.500 sum -4.546 1.756 -7.506 8.949 Atomic orbital electron populations 1.23183 0.91866 1.04166 0.98196 1.22917 0.94556 0.96705 1.03678 1.23390 0.91886 0.97027 0.98675 1.66846 0.98778 1.04653 1.44505 1.19020 0.91591 1.06556 0.91105 1.20350 0.90422 1.06833 0.98456 1.20407 0.97379 1.10205 0.92226 1.18195 0.86087 1.00143 0.92168 1.41950 1.03742 1.83893 1.11326 1.17435 0.91027 0.96894 0.93054 1.19059 1.06505 1.34980 0.90068 0.91526 1.26517 0.97838 0.97194 0.94645 1.69750 1.33544 1.38269 1.06959 0.85831 0.79209 0.79228 0.78159 1.18768 1.20914 1.18541 1.21170 0.96205 1.14199 0.94609 1.23237 0.91092 0.96651 0.98780 0.85409 0.85112 0.92090 0.88265 0.85917 0.84907 0.77660 0.77140 0.90178 0.88758 0.87983 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 14.71 67.78 1.00 -2.20 16 2 C -0.18 -5.58 7.52 -16.10 -0.12 -5.70 16 3 C 0.02 0.63 7.48 82.45 0.62 1.25 16 4 N -0.43 -16.82 6.47 -744.27 -4.81 -21.64 16 5 C 0.01 0.57 5.26 38.13 0.20 0.77 16 6 C -0.14 -5.72 9.96 22.55 0.22 -5.50 16 7 C -0.18 -7.00 9.87 22.34 0.22 -6.78 16 8 C 0.14 6.08 6.79 38.97 0.26 6.35 16 9 N -0.87 -31.95 8.96 -50.31 -0.45 -32.40 16 10 C 0.02 1.09 5.12 -21.18 -0.11 0.98 16 11 C -0.48 -25.92 8.98 23.35 0.21 -25.72 16 12 H 0.07 3.77 6.92 -2.91 -0.02 3.75 16 13 C 0.05 2.74 5.40 85.23 0.46 3.20 16 14 N -0.86 -47.38 13.93 21.82 0.30 -47.08 16 15 Si 0.95 44.37 22.91 68.60 1.57 45.94 16 16 H -0.26 -11.75 5.83 99.48 0.58 -11.16 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.26 -12.63 7.01 99.48 0.70 -11.93 16 19 C -0.24 -11.63 5.16 22.81 0.12 -11.51 16 20 C 0.03 1.05 7.47 82.44 0.62 1.67 16 21 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 22 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 23 H 0.06 2.52 3.66 -2.39 -0.01 2.51 16 24 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 25 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 26 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 27 H 0.39 15.10 7.11 -92.71 -0.66 14.44 16 28 H 0.40 11.53 8.84 -92.71 -0.82 10.71 16 29 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 30 H 0.09 4.71 2.90 -2.91 -0.01 4.70 16 31 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.07 2.63 6.08 -2.39 -0.01 2.62 16 Total: -1.00 -60.73 258.23 -0.14 -60.87 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.45 Total: 37.49 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 3.70 Total: -43.18 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -4.96 Total: -101.11 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.57 Total: 45.94 kcal Total: -60.73 -0.14 -60.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689020787.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.951 kcal (2) G-P(sol) polarization free energy of solvation -60.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds