Wall clock time and date at job start Mon Mar 30 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.47275 * 2 1 4 4 C 1.53006 * 109.46999 * 239.99916 * 2 1 3 5 5 C 1.50702 * 109.47013 * 175.00104 * 4 2 1 6 6 H 1.07998 * 119.99586 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00100 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99872 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00126 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46858 * 60.00057 * 9 7 5 11 11 H 1.48499 * 109.47235 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47256 * 299.99854 * 9 7 5 13 13 S 1.81400 * 109.47071 * 120.00347 * 2 1 3 14 14 O 1.42098 * 109.47123 * 108.95280 * 13 2 1 15 15 C 1.81402 * 103.00030 * 225.34419 * 13 2 1 16 16 C 1.54970 * 110.92211 * 62.38405 * 15 13 2 17 17 C 1.54265 * 104.15833 * 156.29965 * 16 15 13 18 18 C 1.53877 * 106.63828 * 336.44191 * 17 16 15 19 19 C 1.54261 * 106.59867 * 359.97438 * 18 17 16 20 20 H 1.08999 * 109.46937 * 64.97305 * 1 2 3 21 21 H 1.08997 * 109.47279 * 184.96771 * 1 2 3 22 22 H 1.08998 * 109.46911 * 304.97236 * 1 2 3 23 23 H 1.09000 * 109.47101 * 295.00365 * 4 2 1 24 24 H 1.08994 * 109.47124 * 55.00021 * 4 2 1 25 25 H 0.97004 * 120.00090 * 180.02562 * 8 7 5 26 26 H 1.09000 * 110.66937 * 299.08012 * 15 13 2 27 27 H 1.09001 * 110.47345 * 37.64301 * 16 15 13 28 28 H 1.08997 * 110.52954 * 274.97970 * 16 15 13 29 29 H 1.09003 * 110.02974 * 217.13821 * 17 16 15 30 30 H 1.08993 * 110.03216 * 95.75621 * 17 16 15 31 31 H 1.09004 * 110.02784 * 119.26395 * 18 17 16 32 32 H 1.09001 * 110.03488 * 240.63884 * 18 17 16 33 33 H 1.09000 * 110.48851 * 142.28948 * 19 18 17 34 34 H 1.09004 * 110.48439 * 264.92408 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2304 -1.1927 -2.3583 8 7 3.5764 -1.8370 -3.3000 9 14 6.0920 -1.0603 -2.4374 10 1 6.6845 -1.6865 -1.2281 11 1 6.5870 -1.7604 -3.6498 12 1 6.4844 0.3706 -2.4967 13 16 2.1347 -0.8552 1.4811 14 8 2.7028 -2.1033 1.1086 15 6 3.4419 0.2483 2.0844 16 6 2.8626 1.6324 2.4718 17 6 3.8807 2.1978 3.4836 18 6 4.6172 0.9900 4.0892 19 6 4.0208 -0.2681 3.4250 20 1 -0.3633 0.4347 -0.9312 21 1 -0.3633 -1.0238 0.0890 22 1 -0.3633 0.5890 0.8421 23 1 1.7516 -1.7715 -1.2056 24 1 1.6054 -0.2618 -2.1370 25 1 4.0607 -2.2438 -4.0355 26 1 4.2299 0.3550 1.3388 27 1 1.8839 1.5192 2.9382 28 1 2.7965 2.2779 1.5960 29 1 3.3613 2.7496 4.2672 30 1 4.5897 2.8507 2.9747 31 1 5.6836 1.0564 3.8733 32 1 4.4561 0.9562 5.1667 33 1 4.7992 -1.0093 3.2440 34 1 3.2296 -0.6885 4.0458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695882552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:47 Heat of formation + Delta-G solvation = -65.244329 kcal Electronic energy + Delta-G solvation = -14810.514053 eV Core-core repulsion = 12448.005276 eV Total energy + Delta-G solvation = -2362.508777 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.49402 -34.77194 -34.29758 -31.94666 -28.57459 -28.50087 -27.36795 -23.28349 -21.15491 -20.33931 -19.71398 -16.63524 -16.38809 -15.92212 -15.38580 -14.54608 -14.33901 -13.51790 -13.23191 -13.10396 -12.87727 -12.01468 -11.89670 -11.63850 -11.50373 -11.17069 -11.04027 -10.92624 -10.77309 -10.66168 -10.54781 -10.52499 -10.31844 -10.13829 -9.45910 -9.09220 -8.80254 -8.31402 -7.31771 -5.95661 -3.97007 2.47778 3.34179 3.38181 3.41838 3.46021 4.49286 4.56552 4.81824 4.98942 5.05284 5.42627 5.54503 5.63793 5.66689 5.73732 5.82436 5.87028 5.92222 5.99945 6.03178 6.09132 6.19033 6.30400 6.46873 6.52145 6.57574 6.65550 6.93983 7.62519 7.76213 7.98816 8.36657 9.03905 9.65786 11.16384 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.010574 C = 0.008450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.496388 B = 2647.388520 C = 3312.776856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.405 4.405 3 H 0.095 0.905 4 C 0.040 3.960 5 C -0.518 4.518 6 H 0.047 0.953 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.278 1.278 13 S 1.229 4.771 14 O -0.826 6.826 15 C -0.422 4.422 16 C -0.091 4.091 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.094 4.094 20 H 0.058 0.942 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.025 0.975 24 H 0.019 0.981 25 H 0.260 0.740 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 7.672 14.844 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.524 4.524 3 H 0.114 0.886 4 C 0.002 3.998 5 C -0.556 4.556 6 H 0.065 0.935 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.203 1.203 13 S 1.428 4.572 14 O -0.821 6.821 15 C -0.537 4.537 16 C -0.130 4.130 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.132 4.132 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.128 6.679 15.041 17.237 hybrid contribution 2.887 0.385 -1.845 3.448 sum -2.241 7.064 13.195 15.134 Atomic orbital electron populations 1.21403 0.93334 1.01198 1.01624 1.27440 1.00782 1.09067 1.15065 0.88629 1.18937 0.95490 0.95303 0.90065 1.21075 0.91928 1.34430 1.08182 0.93455 1.24890 0.98102 0.95021 0.95752 1.69937 1.35477 1.35745 1.12032 0.86745 0.86246 0.78054 0.77564 1.20203 1.21060 1.20321 1.69803 1.02338 0.83419 1.01660 1.93152 1.76981 1.29909 1.82058 1.28718 1.14382 1.07238 1.03406 1.22020 0.98288 0.93923 0.98738 1.22118 0.98142 0.97454 0.98227 1.22116 0.99723 0.94748 0.99246 1.21971 0.99950 0.97366 0.93942 0.92327 0.93047 0.92748 0.95668 0.96246 0.92994 0.88085 0.90709 0.91238 0.91943 0.92224 0.92288 0.91997 0.91633 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.20 37.16 0.34 -1.45 16 2 C -0.41 -8.01 2.73 -26.73 -0.07 -8.08 16 3 H 0.10 1.79 7.01 -51.93 -0.36 1.43 16 4 C 0.04 1.08 4.10 -27.88 -0.11 0.96 16 5 C -0.52 -15.50 7.97 -34.44 -0.27 -15.78 16 6 H 0.05 1.37 5.77 -52.49 -0.30 1.06 16 7 C 0.06 1.97 5.46 -17.82 -0.10 1.87 16 8 N -0.89 -28.67 13.29 55.43 0.74 -27.93 16 9 Si 0.89 23.46 29.54 -169.99 -5.02 18.44 16 10 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 S 1.23 22.11 11.93 -107.50 -1.28 20.83 16 14 O -0.83 -21.18 16.41 -35.23 -0.58 -21.76 16 15 C -0.42 -6.88 3.21 -24.70 -0.08 -6.96 16 16 C -0.09 -1.13 5.76 -25.03 -0.14 -1.27 16 17 C -0.12 -1.36 6.80 -25.61 -0.17 -1.53 16 18 C -0.12 -1.41 6.80 -25.61 -0.17 -1.59 16 19 C -0.09 -1.32 6.28 -25.08 -0.16 -1.48 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.03 0.76 7.77 -51.93 -0.40 0.36 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 26 H 0.10 2.04 6.47 -51.93 -0.34 1.70 16 27 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 28 H 0.07 0.88 7.62 -51.93 -0.40 0.49 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 LS Contribution 283.12 15.07 4.27 4.27 Total: -1.00 -37.77 283.12 -8.40 -46.18 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -5.58 Total: -4.72 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: -0.95 Total: -35.31 kcal Atomic # 7 Polarization: -28.67 SS G_CDS: 0.74 Total: -27.93 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.58 Total: -21.76 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.44 kcal Atomic # 16 Polarization: 22.11 SS G_CDS: -1.28 Total: 20.83 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -37.77 -8.40 -46.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.067 kcal (2) G-P(sol) polarization free energy of solvation -37.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds