Wall clock time and date at job start Mon Mar 30 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.47275 * 2 1 4 4 C 1.53006 * 109.46999 * 239.99916 * 2 1 3 5 5 C 1.50702 * 109.47013 * 175.00104 * 4 2 1 6 6 H 1.07998 * 119.99586 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00100 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99872 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00126 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46858 * 60.00057 * 9 7 5 11 11 H 1.48499 * 109.47235 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47256 * 299.99854 * 9 7 5 13 13 S 1.81400 * 109.47071 * 120.00347 * 2 1 3 14 14 O 1.42098 * 109.47123 * 108.95280 * 13 2 1 15 15 C 1.81402 * 103.00030 * 225.34419 * 13 2 1 16 16 C 1.54970 * 110.92211 * 62.38405 * 15 13 2 17 17 C 1.54265 * 104.15833 * 156.29965 * 16 15 13 18 18 C 1.53877 * 106.63828 * 336.44191 * 17 16 15 19 19 C 1.54261 * 106.59867 * 359.97438 * 18 17 16 20 20 H 1.08999 * 109.46937 * 64.97305 * 1 2 3 21 21 H 1.08997 * 109.47279 * 184.96771 * 1 2 3 22 22 H 1.08998 * 109.46911 * 304.97236 * 1 2 3 23 23 H 1.09000 * 109.47101 * 295.00365 * 4 2 1 24 24 H 1.08994 * 109.47124 * 55.00021 * 4 2 1 25 25 H 0.97004 * 120.00090 * 180.02562 * 8 7 5 26 26 H 1.09000 * 110.66937 * 299.08012 * 15 13 2 27 27 H 1.09001 * 110.47345 * 37.64301 * 16 15 13 28 28 H 1.08997 * 110.52954 * 274.97970 * 16 15 13 29 29 H 1.09003 * 110.02974 * 217.13821 * 17 16 15 30 30 H 1.08993 * 110.03216 * 95.75621 * 17 16 15 31 31 H 1.09004 * 110.02784 * 119.26395 * 18 17 16 32 32 H 1.09001 * 110.03488 * 240.63884 * 18 17 16 33 33 H 1.09000 * 110.48851 * 142.28948 * 19 18 17 34 34 H 1.09004 * 110.48439 * 264.92408 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2304 -1.1927 -2.3583 8 7 3.5764 -1.8370 -3.3000 9 14 6.0920 -1.0603 -2.4374 10 1 6.6845 -1.6865 -1.2281 11 1 6.5870 -1.7604 -3.6498 12 1 6.4844 0.3706 -2.4967 13 16 2.1347 -0.8552 1.4811 14 8 2.7028 -2.1033 1.1086 15 6 3.4419 0.2483 2.0844 16 6 2.8626 1.6324 2.4718 17 6 3.8807 2.1978 3.4836 18 6 4.6172 0.9900 4.0892 19 6 4.0208 -0.2681 3.4250 20 1 -0.3633 0.4347 -0.9312 21 1 -0.3633 -1.0238 0.0890 22 1 -0.3633 0.5890 0.8421 23 1 1.7516 -1.7715 -1.2056 24 1 1.6054 -0.2618 -2.1370 25 1 4.0607 -2.2438 -4.0355 26 1 4.2299 0.3550 1.3388 27 1 1.8839 1.5192 2.9382 28 1 2.7965 2.2779 1.5960 29 1 3.3613 2.7496 4.2672 30 1 4.5897 2.8507 2.9747 31 1 5.6836 1.0564 3.8733 32 1 4.4561 0.9562 5.1667 33 1 4.7992 -1.0093 3.2440 34 1 3.2296 -0.6885 4.0458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695882552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:47 Heat of formation + Delta-G solvation = -92.215333 kcal Electronic energy + Delta-G solvation = -14811.683603 eV Core-core repulsion = 12448.005276 eV Total energy + Delta-G solvation = -2363.678328 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.54433 -36.66292 -36.17745 -34.04932 -29.71765 -29.52859 -29.28490 -25.30197 -22.72284 -21.53452 -20.88011 -18.68350 -18.08872 -17.30631 -16.73378 -16.59151 -15.83739 -14.96543 -14.82495 -14.34869 -14.19092 -13.88170 -13.60455 -13.32254 -13.24271 -12.80006 -12.57384 -12.52813 -12.30835 -12.10796 -11.94396 -11.83665 -11.66057 -11.40232 -11.19737 -11.14836 -10.72925 -10.39977 -8.98388 -8.32829 -6.41341 1.01331 1.18094 1.23961 1.30075 1.97315 2.25440 3.00303 3.15068 3.73854 3.78676 4.07329 4.27079 4.37997 4.54928 4.60899 4.66203 4.73051 4.76924 4.91917 4.96857 5.07115 5.18628 5.19815 5.27053 5.30455 5.34154 5.41310 5.44194 5.52302 5.60124 5.70062 6.03438 6.71791 7.25637 8.80077 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.010574 C = 0.008450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.496388 B = 2647.388520 C = 3312.776856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.406 4.406 3 H 0.110 0.890 4 C 0.042 3.958 5 C -0.532 4.532 6 H 0.052 0.948 7 C -0.002 4.002 8 N -0.932 5.932 9 Si 0.951 3.049 10 H -0.282 1.282 11 H -0.274 1.274 12 H -0.256 1.256 13 S 1.292 4.708 14 O -0.912 6.912 15 C -0.422 4.422 16 C -0.091 4.091 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.101 4.101 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.114 0.886 23 H -0.019 1.019 24 H -0.006 1.006 25 H 0.263 0.737 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.036 0.964 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 10.042 17.427 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.523 4.523 3 H 0.128 0.872 4 C 0.004 3.996 5 C -0.570 4.570 6 H 0.070 0.930 7 C -0.199 4.199 8 N -0.572 5.572 9 Si 0.775 3.225 10 H -0.208 1.208 11 H -0.198 1.198 12 H -0.181 1.181 13 S 1.493 4.507 14 O -0.907 6.907 15 C -0.540 4.540 16 C -0.129 4.129 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.139 4.139 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.133 0.867 23 H -0.001 1.001 24 H 0.012 0.988 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.136 0.864 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.534 9.048 17.609 20.556 hybrid contribution 3.018 -0.305 -2.598 3.994 sum -2.516 8.742 15.011 17.552 Atomic orbital electron populations 1.21498 0.89589 1.02429 1.04044 1.27459 1.04269 1.08831 1.11778 0.87191 1.18793 0.94422 0.93439 0.92926 1.21571 0.93647 1.33843 1.07982 0.92976 1.25892 1.03447 0.94923 0.95674 1.70074 1.37478 1.36891 1.12797 0.85723 0.80056 0.79195 0.77521 1.20774 1.19837 1.18074 1.68573 1.02009 0.81056 0.99018 1.93014 1.79411 1.35308 1.82977 1.28655 1.12329 1.09595 1.03435 1.22203 1.00624 0.90627 0.99469 1.22142 0.97806 0.97108 0.98676 1.22132 0.98983 0.93522 1.00925 1.22122 1.00266 0.98218 0.93324 0.92871 0.93204 0.86706 1.00109 0.98769 0.92828 0.92585 0.86365 0.91537 0.88448 0.93016 0.93458 0.88903 0.94500 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 9.20 71.98 0.66 -2.69 16 2 C -0.41 -15.83 2.73 30.60 0.08 -15.75 16 3 H 0.11 3.95 7.01 -2.40 -0.02 3.93 16 4 C 0.04 2.38 4.10 29.85 0.12 2.50 16 5 C -0.53 -32.98 7.97 25.60 0.20 -32.78 16 6 H 0.05 3.10 5.77 -2.91 -0.02 3.08 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 8 N -0.93 -62.15 13.29 21.45 0.28 -61.87 16 9 Si 0.95 49.31 29.54 68.60 2.03 51.34 16 10 H -0.28 -14.75 7.11 99.48 0.71 -14.04 16 11 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 13 S 1.29 45.83 11.93 -56.49 -0.67 45.15 16 14 O -0.91 -48.61 16.41 -148.98 -2.44 -51.06 16 15 C -0.42 -13.25 3.21 31.91 0.10 -13.14 16 16 C -0.09 -1.89 5.76 31.70 0.18 -1.70 16 17 C -0.12 -2.16 6.80 31.32 0.21 -1.95 16 18 C -0.12 -2.38 6.80 31.32 0.21 -2.17 16 19 C -0.10 -2.66 6.28 31.67 0.20 -2.47 16 20 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 22 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 23 H -0.02 -1.27 7.77 -2.39 -0.02 -1.29 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.38 16 25 H 0.26 16.46 8.31 -92.71 -0.77 15.68 16 26 H 0.06 2.29 6.47 -2.39 -0.02 2.27 16 27 H 0.12 1.47 8.05 -2.39 -0.02 1.45 16 28 H 0.07 1.46 7.62 -2.39 -0.02 1.44 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 2.02 8.05 -2.38 -0.02 2.00 16 Total: -1.00 -88.72 283.12 2.69 -86.03 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: 1.05 Total: 0.20 kcal Atomic # 6 Polarization: -72.24 SS G_CDS: 2.44 Total: -69.80 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.28 Total: -61.87 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -2.44 Total: -51.06 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.03 Total: 51.34 kcal Atomic # 16 Polarization: 45.83 SS G_CDS: -0.67 Total: 45.15 kcal Total: -88.72 2.69 -86.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.183 kcal (2) G-P(sol) polarization free energy of solvation -88.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds