Wall clock time and date at job start Mon Mar 30 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47416 * 2 1 4 4 C 1.50702 * 109.47129 * 240.00038 * 2 1 3 5 5 H 1.07999 * 119.99719 * 275.00830 * 4 2 1 6 6 C 1.37869 * 120.00336 * 95.01380 * 4 2 1 7 7 N 1.31511 * 120.00513 * 184.89809 * 6 4 2 8 8 Si 1.86809 * 119.99738 * 4.89681 * 6 4 2 9 9 H 1.48495 * 109.47142 * 84.80509 * 8 6 4 10 10 H 1.48506 * 109.46812 * 204.80322 * 8 6 4 11 11 H 1.48500 * 109.46865 * 324.80096 * 8 6 4 12 12 S 1.81404 * 109.46786 * 119.99968 * 2 1 3 13 13 C 1.81393 * 103.00090 * 294.99710 * 12 2 1 14 14 H 1.09005 * 111.02126 * 50.78137 * 13 12 2 15 15 C 1.55493 * 111.33530 * 286.37670 * 13 12 2 16 16 O 1.43651 * 105.18271 * 205.70508 * 15 13 12 17 17 C 1.43240 * 109.96891 * 24.43499 * 16 15 13 18 18 C 1.52994 * 109.82927 * 238.77360 * 17 16 15 19 19 C 1.52995 * 109.82868 * 117.79954 * 17 16 15 20 20 C 1.54384 * 107.58829 * 358.28887 * 17 16 15 21 21 H 1.09000 * 109.47244 * 175.15267 * 1 2 3 22 22 H 1.09000 * 109.46863 * 295.15491 * 1 2 3 23 23 H 1.09004 * 109.46853 * 55.15403 * 1 2 3 24 24 H 0.96993 * 120.00404 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.28496 * 86.78140 * 15 13 12 26 26 H 1.09003 * 110.38058 * 324.68162 * 15 13 12 27 27 H 1.09004 * 109.47171 * 178.13452 * 18 17 16 28 28 H 1.09000 * 109.47216 * 298.13279 * 18 17 16 29 29 H 1.09001 * 109.47184 * 58.13461 * 18 17 16 30 30 H 1.09003 * 109.47583 * 301.86558 * 19 17 16 31 31 H 1.08999 * 109.47269 * 61.86555 * 19 17 16 32 32 H 1.09006 * 109.47231 * 181.86305 * 19 17 16 33 33 H 1.08997 * 110.85003 * 96.83296 * 20 17 16 34 34 H 1.08996 * 110.84500 * 220.25306 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2290 6 6 2.3605 0.0120 -2.3579 7 7 2.7065 -0.6131 -3.4620 8 14 2.3137 1.8791 -2.3173 9 1 3.5987 2.3949 -1.7811 10 1 2.1069 2.3990 -3.6929 11 1 1.1979 2.3273 -1.4458 12 16 2.1346 -0.8552 1.4812 13 6 1.5664 0.2153 2.8309 14 1 0.5037 0.4374 2.7329 15 6 2.4074 1.5208 2.9099 16 8 2.3109 1.9483 4.2779 17 6 2.0214 0.8274 5.1214 18 6 0.7126 1.0700 5.8758 19 6 3.1646 0.6176 6.1163 20 6 1.8812 -0.4146 4.2152 21 1 -0.3634 -1.0240 -0.0868 22 1 -0.3633 0.4368 0.9302 23 1 -0.3633 0.5872 -0.8434 24 1 2.9371 -0.1049 -4.2553 25 1 1.9915 2.2790 2.2463 26 1 3.4464 1.3194 2.6489 27 1 0.4809 0.2000 6.4904 28 1 0.8181 1.9476 6.5135 29 1 -0.0936 1.2349 5.1609 30 1 4.0961 0.4620 5.5719 31 1 3.2585 1.4975 6.7528 32 1 2.9539 -0.2562 6.7330 33 1 2.8138 -0.9778 4.1820 34 1 1.0592 -1.0477 4.5492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705525264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:27 Heat of formation + Delta-G solvation = -66.736154 kcal Electronic energy + Delta-G solvation = -14521.376018 eV Core-core repulsion = 12158.802550 eV Total energy + Delta-G solvation = -2362.573468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59685 -33.98229 -33.11699 -31.79515 -31.15300 -27.39813 -25.73750 -25.45415 -21.90837 -21.02850 -19.98371 -17.21237 -16.48502 -15.98936 -15.24154 -14.59348 -14.05554 -13.79661 -13.57951 -13.35237 -12.82804 -12.73229 -12.45114 -12.27991 -11.85648 -11.76661 -11.62089 -11.25772 -11.15411 -10.89520 -10.78373 -10.62461 -10.21406 -9.78397 -9.55164 -9.42768 -8.84055 -8.73769 -6.82793 -6.31294 -4.29542 2.44637 3.15926 3.23656 3.24999 3.61537 3.93655 4.22065 4.57871 4.85703 4.87814 5.07739 5.12790 5.18268 5.37637 5.53638 5.65447 5.67907 5.81325 5.84938 5.88196 6.03359 6.07711 6.12006 6.19644 6.28173 6.36622 6.40642 6.74916 7.09438 7.17277 7.38275 8.21942 8.74539 9.26345 10.79754 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043326 B = 0.007099 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.102014 B = 3943.076481 C = 4120.360902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 H 0.046 0.954 4 C -0.490 4.490 5 H 0.084 0.916 6 C 0.083 3.917 7 N -0.880 5.880 8 Si 0.874 3.126 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.264 1.264 12 S -0.278 6.278 13 C -0.105 4.105 14 H 0.092 0.908 15 C 0.060 3.940 16 O -0.377 6.377 17 C 0.101 3.899 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.119 4.119 21 H 0.059 0.941 22 H 0.023 0.977 23 H 0.052 0.948 24 H 0.270 0.730 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.625 3.733 15.254 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.059 4.059 3 H 0.064 0.936 4 C -0.532 4.532 5 H 0.102 0.898 6 C -0.124 4.124 7 N -0.516 5.516 8 Si 0.701 3.299 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.189 1.189 12 S -0.045 6.045 13 C -0.234 4.234 14 H 0.110 0.890 15 C -0.019 4.019 16 O -0.297 6.297 17 C 0.061 3.939 18 C -0.208 4.208 19 C -0.210 4.210 20 C -0.157 4.157 21 H 0.078 0.922 22 H 0.042 0.958 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.952 2.981 15.236 15.647 hybrid contribution -0.715 1.875 -0.383 2.043 sum -2.666 4.856 14.853 15.853 Atomic orbital electron populations 1.22230 0.97078 1.01682 0.98646 1.21153 0.94716 0.97250 0.92732 0.93605 1.20524 1.43751 0.95849 0.93065 0.89790 1.25004 0.93652 0.98610 0.95090 1.69856 1.43627 1.36357 1.01717 0.86876 0.79507 0.85790 0.77750 1.19505 1.20891 1.18853 1.87071 1.76163 1.39622 1.01618 1.24866 1.02465 0.98210 0.97874 0.88986 1.23918 0.99940 0.95062 0.82954 1.88386 1.92218 1.31911 1.17146 1.22069 0.94755 0.85961 0.91128 1.22067 0.96527 1.01975 1.00260 1.22087 0.98232 1.01792 0.98870 1.23014 1.03423 0.97172 0.92135 0.92233 0.95773 0.92943 0.91958 0.90063 0.90843 0.91623 0.92109 0.92171 0.92000 0.92120 0.91642 0.89705 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.13 37.16 0.34 -2.49 16 2 C 0.07 1.59 2.42 -27.88 -0.07 1.53 16 3 H 0.05 1.07 5.29 -51.92 -0.27 0.79 16 4 C -0.49 -13.43 8.86 -34.44 -0.31 -13.74 16 5 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.88 -25.75 13.96 55.43 0.77 -24.98 16 8 Si 0.87 20.58 26.99 -169.99 -4.59 15.99 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.26 -5.91 6.82 56.52 0.39 -5.52 16 12 S -0.28 -5.80 20.60 -107.50 -2.21 -8.02 16 13 C -0.11 -1.76 3.41 -24.18 -0.08 -1.84 16 14 H 0.09 1.52 6.77 -51.93 -0.35 1.17 16 15 C 0.06 0.99 7.30 38.48 0.28 1.28 16 16 O -0.38 -5.96 10.68 -35.23 -0.38 -6.34 16 17 C 0.10 1.32 1.27 -89.90 -0.11 1.20 16 18 C -0.15 -1.66 8.73 37.15 0.32 -1.33 16 19 C -0.15 -1.69 8.75 37.16 0.32 -1.36 16 20 C -0.12 -1.65 5.57 -24.78 -0.14 -1.79 16 21 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 22 H 0.02 0.43 6.59 -51.93 -0.34 0.09 16 23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 26 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.21 7.73 -51.93 -0.40 0.80 16 34 H 0.08 1.04 7.82 -51.93 -0.41 0.64 16 LS Contribution 286.06 15.07 4.31 4.31 Total: -1.00 -28.53 286.06 -7.20 -35.73 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.57 Total: -0.36 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 0.46 Total: -16.35 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.77 Total: -24.98 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.38 Total: -6.34 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.59 Total: 15.99 kcal Atomic # 16 Polarization: -5.80 SS G_CDS: -2.21 Total: -8.02 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.53 -7.20 -35.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705525264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.001 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds