Wall clock time and date at job start Mon Mar 30 2020 02:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47416 * 2 1 4 4 C 1.50702 * 109.47129 * 240.00038 * 2 1 3 5 5 H 1.07999 * 119.99719 * 275.00830 * 4 2 1 6 6 C 1.37869 * 120.00336 * 95.01380 * 4 2 1 7 7 N 1.31511 * 120.00513 * 184.89809 * 6 4 2 8 8 Si 1.86809 * 119.99738 * 4.89681 * 6 4 2 9 9 H 1.48495 * 109.47142 * 84.80509 * 8 6 4 10 10 H 1.48506 * 109.46812 * 204.80322 * 8 6 4 11 11 H 1.48500 * 109.46865 * 324.80096 * 8 6 4 12 12 S 1.81404 * 109.46786 * 119.99968 * 2 1 3 13 13 C 1.81393 * 103.00090 * 294.99710 * 12 2 1 14 14 H 1.09005 * 111.02126 * 50.78137 * 13 12 2 15 15 C 1.55493 * 111.33530 * 286.37670 * 13 12 2 16 16 O 1.43651 * 105.18271 * 205.70508 * 15 13 12 17 17 C 1.43240 * 109.96891 * 24.43499 * 16 15 13 18 18 C 1.52994 * 109.82927 * 238.77360 * 17 16 15 19 19 C 1.52995 * 109.82868 * 117.79954 * 17 16 15 20 20 C 1.54384 * 107.58829 * 358.28887 * 17 16 15 21 21 H 1.09000 * 109.47244 * 175.15267 * 1 2 3 22 22 H 1.09000 * 109.46863 * 295.15491 * 1 2 3 23 23 H 1.09004 * 109.46853 * 55.15403 * 1 2 3 24 24 H 0.96993 * 120.00404 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.28496 * 86.78140 * 15 13 12 26 26 H 1.09003 * 110.38058 * 324.68162 * 15 13 12 27 27 H 1.09004 * 109.47171 * 178.13452 * 18 17 16 28 28 H 1.09000 * 109.47216 * 298.13279 * 18 17 16 29 29 H 1.09001 * 109.47184 * 58.13461 * 18 17 16 30 30 H 1.09003 * 109.47583 * 301.86558 * 19 17 16 31 31 H 1.08999 * 109.47269 * 61.86555 * 19 17 16 32 32 H 1.09006 * 109.47231 * 181.86305 * 19 17 16 33 33 H 1.08997 * 110.85003 * 96.83296 * 20 17 16 34 34 H 1.08996 * 110.84500 * 220.25306 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2290 6 6 2.3605 0.0120 -2.3579 7 7 2.7065 -0.6131 -3.4620 8 14 2.3137 1.8791 -2.3173 9 1 3.5987 2.3949 -1.7811 10 1 2.1069 2.3990 -3.6929 11 1 1.1979 2.3273 -1.4458 12 16 2.1346 -0.8552 1.4812 13 6 1.5664 0.2153 2.8309 14 1 0.5037 0.4374 2.7329 15 6 2.4074 1.5208 2.9099 16 8 2.3109 1.9483 4.2779 17 6 2.0214 0.8274 5.1214 18 6 0.7126 1.0700 5.8758 19 6 3.1646 0.6176 6.1163 20 6 1.8812 -0.4146 4.2152 21 1 -0.3634 -1.0240 -0.0868 22 1 -0.3633 0.4368 0.9302 23 1 -0.3633 0.5872 -0.8434 24 1 2.9371 -0.1049 -4.2553 25 1 1.9915 2.2790 2.2463 26 1 3.4464 1.3194 2.6489 27 1 0.4809 0.2000 6.4904 28 1 0.8181 1.9476 6.5135 29 1 -0.0936 1.2349 5.1609 30 1 4.0961 0.4620 5.5719 31 1 3.2585 1.4975 6.7528 32 1 2.9539 -0.2562 6.7330 33 1 2.8138 -0.9778 4.1820 34 1 1.0592 -1.0477 4.5492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705525264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:26 Heat of formation + Delta-G solvation = -83.564709 kcal Electronic energy + Delta-G solvation = -14522.105758 eV Core-core repulsion = 12158.802550 eV Total energy + Delta-G solvation = -2363.303209 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.74058 -35.93970 -34.16793 -33.41216 -32.74883 -28.23547 -27.42695 -26.86024 -23.31525 -22.81247 -21.03736 -19.24278 -17.79052 -17.42323 -16.66305 -16.11013 -15.65449 -15.10869 -14.82327 -14.64058 -14.51910 -14.12356 -13.83029 -13.54978 -13.15649 -12.98914 -12.87350 -12.64971 -12.61239 -12.40148 -12.13168 -11.93909 -11.76483 -11.64747 -11.29117 -10.84522 -10.58385 -10.49726 -8.52237 -8.41254 -6.46228 0.87244 1.31219 1.32898 1.41382 1.92336 2.25168 2.80542 3.00282 3.39488 3.70440 3.86451 4.02423 4.08002 4.21094 4.29412 4.56922 4.60751 4.63798 4.68108 4.75344 4.78681 4.89269 4.92846 4.96488 5.00240 5.02602 5.27048 5.35276 5.39561 5.44284 6.05002 6.09070 6.55489 7.14226 8.74160 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043326 B = 0.007099 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.102014 B = 3943.076481 C = 4120.360902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.067 3.933 3 H 0.049 0.951 4 C -0.504 4.504 5 H 0.036 0.964 6 C 0.028 3.972 7 N -0.932 5.932 8 Si 0.936 3.064 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.241 1.241 12 S -0.300 6.300 13 C -0.093 4.093 14 H 0.101 0.899 15 C 0.061 3.939 16 O -0.387 6.387 17 C 0.095 3.905 18 C -0.148 4.148 19 C -0.151 4.151 20 C -0.114 4.114 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.273 0.727 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 5.302 17.860 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 H 0.067 0.933 4 C -0.544 4.544 5 H 0.055 0.945 6 C -0.173 4.173 7 N -0.570 5.570 8 Si 0.759 3.241 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.164 1.164 12 S -0.068 6.068 13 C -0.222 4.222 14 H 0.119 0.881 15 C -0.017 4.017 16 O -0.308 6.308 17 C 0.055 3.945 18 C -0.206 4.206 19 C -0.208 4.208 20 C -0.153 4.153 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.964 4.542 17.844 18.650 hybrid contribution -0.393 1.292 -1.031 1.699 sum -3.357 5.834 16.813 18.110 Atomic orbital electron populations 1.22124 0.95017 1.01639 1.00297 1.21048 0.96224 0.96743 0.92071 0.93320 1.20612 1.44309 0.93995 0.95504 0.94520 1.25848 0.93293 1.03774 0.94407 1.69994 1.45896 1.38450 1.02654 0.85889 0.80378 0.79466 0.78387 1.18959 1.20383 1.16425 1.87009 1.76730 1.40479 1.02597 1.24902 1.02702 0.97613 0.96987 0.88052 1.23796 0.99268 0.94872 0.83811 1.88390 1.92440 1.33199 1.16721 1.22347 0.96688 0.84495 0.90961 1.22074 0.94893 1.03380 1.00223 1.22096 0.96961 1.03165 0.98600 1.23060 1.03970 0.97849 0.90389 0.92947 0.92642 0.92954 0.91786 0.89961 0.91948 0.89295 0.91541 0.92699 0.93065 0.91447 0.89387 0.90221 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.13 71.98 0.66 -4.57 16 2 C 0.07 3.06 2.42 29.85 0.07 3.13 16 3 H 0.05 2.19 5.29 -2.39 -0.01 2.17 16 4 C -0.50 -28.41 8.86 25.60 0.23 -28.18 16 5 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 6 C 0.03 1.60 5.47 84.65 0.46 2.06 16 7 N -0.93 -56.53 13.96 21.44 0.30 -56.23 16 8 Si 0.94 42.18 26.99 68.60 1.85 44.03 16 9 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.24 -9.86 6.82 99.48 0.68 -9.18 16 12 S -0.30 -12.32 20.60 -56.49 -1.16 -13.48 16 13 C -0.09 -2.87 3.41 32.25 0.11 -2.76 16 14 H 0.10 2.99 6.77 -2.38 -0.02 2.97 16 15 C 0.06 1.91 7.30 72.84 0.53 2.44 16 16 O -0.39 -11.22 10.68 -148.98 -1.59 -12.82 16 17 C 0.09 2.16 1.27 -10.33 -0.01 2.15 16 18 C -0.15 -2.67 8.73 71.98 0.63 -2.04 16 19 C -0.15 -2.86 8.75 71.98 0.63 -2.23 16 20 C -0.11 -2.83 5.57 31.86 0.18 -2.65 16 21 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 22 H 0.05 1.85 6.59 -2.39 -0.02 1.83 16 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.06 2.07 8.04 -2.39 -0.02 2.05 16 27 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.08 2.08 7.73 -2.39 -0.02 2.06 16 34 H 0.10 2.18 7.82 -2.39 -0.02 2.16 16 Total: -1.00 -63.06 286.06 3.90 -59.16 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.02 Total: 12.01 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 3.48 Total: -32.66 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.30 Total: -56.23 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -1.59 Total: -12.82 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.85 Total: 44.03 kcal Atomic # 16 Polarization: -12.32 SS G_CDS: -1.16 Total: -13.48 kcal Total: -63.06 3.90 -59.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705525264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.409 kcal (2) G-P(sol) polarization free energy of solvation -63.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds