Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47005 * 2 1 4 4 C 1.50692 * 109.47317 * 120.00610 * 2 1 3 5 5 H 1.08000 * 120.00467 * 120.00177 * 4 2 1 6 6 C 1.37882 * 120.00194 * 299.99758 * 4 2 1 7 7 N 1.31513 * 119.99664 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00297 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47257 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47112 * 299.99992 * 8 6 4 11 11 H 1.48493 * 109.47290 * 60.00054 * 8 6 4 12 12 S 1.81401 * 109.46894 * 240.00363 * 2 1 3 13 13 C 1.81400 * 102.99952 * 173.17526 * 12 2 1 14 14 H 1.08998 * 110.80700 * 56.64788 * 13 12 2 15 15 C 1.54991 * 110.90903 * 293.01920 * 13 12 2 16 16 O 1.44379 * 103.49409 * 204.77467 * 15 13 12 17 17 C 1.43745 * 106.97100 * 40.06414 * 16 15 13 18 18 C 1.52997 * 109.88331 * 92.91082 * 17 16 15 19 19 C 1.53009 * 109.87725 * 214.06351 * 17 16 15 20 20 C 1.54163 * 107.29770 * 333.45333 * 17 16 15 21 21 H 1.09008 * 109.47034 * 186.39426 * 1 2 3 22 22 H 1.09005 * 109.47237 * 306.38675 * 1 2 3 23 23 H 1.08994 * 109.47341 * 66.39233 * 1 2 3 24 24 H 0.97002 * 120.00384 * 179.97438 * 7 6 4 25 25 H 1.09000 * 110.62156 * 323.28167 * 15 13 12 26 26 H 1.09006 * 110.61991 * 86.27727 * 15 13 12 27 27 H 1.09005 * 109.46761 * 61.45106 * 18 17 16 28 28 H 1.08999 * 109.47628 * 181.44989 * 18 17 16 29 29 H 1.09001 * 109.47150 * 301.45492 * 18 17 16 30 30 H 1.08998 * 109.46877 * 58.54180 * 19 17 16 31 31 H 1.08996 * 109.46931 * 178.54533 * 19 17 16 32 32 H 1.09001 * 109.46770 * 298.54717 * 19 17 16 33 33 H 1.08995 * 110.52176 * 243.39832 * 20 17 16 34 34 H 1.09004 * 110.48072 * 120.73595 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 1.8271 -0.4203 5.2204 10 1 1.8282 -2.5201 4.0079 11 1 3.8075 -1.1193 4.0075 12 16 2.1346 -0.8551 -1.4812 13 6 3.9252 -0.5730 -1.4128 14 1 4.3388 -0.9368 -0.4722 15 6 4.2573 0.9267 -1.6198 16 8 5.6082 0.9055 -2.1289 17 6 5.6929 -0.1964 -3.0481 18 6 5.4018 0.2884 -4.4697 19 6 7.0881 -0.8213 -2.9840 20 6 4.6349 -1.2328 -2.6201 21 1 -0.3633 -1.0213 0.1145 22 1 -0.3634 0.6097 0.8273 23 1 -0.3634 0.4115 -0.9416 24 1 0.7082 1.1606 3.4845 25 1 3.5797 1.3730 -2.3477 26 1 4.2126 1.4640 -0.6724 27 1 6.1464 1.0296 -4.7604 28 1 5.4424 -0.5564 -5.1573 29 1 4.4093 0.7377 -4.5043 30 1 7.2891 -1.1576 -1.9668 31 1 7.1369 -1.6716 -3.6642 32 1 7.8320 -0.0798 -3.2752 33 1 5.1131 -2.1649 -2.3190 34 1 3.9261 -1.4105 -3.4289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705525270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = -67.820532 kcal Electronic energy + Delta-G solvation = -14587.627976 eV Core-core repulsion = 12225.007486 eV Total energy + Delta-G solvation = -2362.620490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.47769 -34.01795 -32.92466 -31.49328 -30.27878 -27.35475 -25.70017 -25.26344 -21.83050 -20.92280 -19.88084 -16.54737 -16.11943 -15.75080 -15.16349 -14.80545 -14.10749 -13.73638 -13.25716 -13.00961 -12.95390 -12.55945 -12.13032 -11.89469 -11.60571 -11.47505 -11.25274 -11.09128 -10.94738 -10.83406 -10.56809 -10.44175 -10.28166 -9.75535 -9.40893 -9.24912 -8.83909 -8.43058 -6.75615 -6.10647 -4.23878 2.68315 3.25347 3.29804 3.32431 3.78094 4.16951 4.34570 4.78705 4.93764 5.03146 5.16212 5.25951 5.36369 5.59487 5.65988 5.74007 5.80501 5.93891 5.96948 6.02849 6.18788 6.28592 6.36290 6.45078 6.66632 6.80906 6.88470 7.19835 7.39315 7.63873 7.83247 8.08775 8.76138 9.40932 10.90292 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.007630 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.783796 B = 3668.876911 C = 4062.433677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.111 3.889 3 H 0.044 0.956 4 C -0.522 4.522 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.276 1.276 12 S -0.311 6.311 13 C -0.073 4.073 14 H 0.099 0.901 15 C 0.058 3.942 16 O -0.371 6.371 17 C 0.098 3.902 18 C -0.161 4.161 19 C -0.141 4.141 20 C -0.123 4.123 21 H 0.038 0.962 22 H 0.094 0.906 23 H 0.018 0.982 24 H 0.264 0.736 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 -1.572 -9.588 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.017 4.017 3 H 0.062 0.938 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.201 1.201 12 S -0.082 6.082 13 C -0.202 4.202 14 H 0.118 0.882 15 C -0.020 4.020 16 O -0.290 6.290 17 C 0.057 3.943 18 C -0.218 4.218 19 C -0.199 4.199 20 C -0.161 4.161 21 H 0.057 0.943 22 H 0.112 0.888 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.760 -1.880 -10.174 12.359 hybrid contribution 0.703 0.050 1.847 1.977 sum 7.463 -1.830 -8.327 11.331 Atomic orbital electron populations 1.21612 0.95524 1.01119 0.99937 1.20781 0.95645 0.96041 0.89184 0.93838 1.21266 1.32328 1.12806 0.89681 0.91794 1.24979 0.94745 0.94863 0.98941 1.69863 1.36140 1.22658 1.23989 0.86556 0.79260 0.79868 0.81844 1.21110 1.20025 1.20139 1.86069 1.03452 1.77944 1.40741 1.24349 0.96076 0.98139 1.01654 0.88218 1.23959 0.83040 0.95379 0.99620 1.88866 1.29949 1.49863 1.60367 1.22092 0.95578 0.86739 0.89889 1.22234 1.02363 1.01534 0.95702 1.21888 0.95162 1.00271 1.02555 1.22905 0.97114 0.98595 0.97511 0.94325 0.88803 0.96266 0.92569 0.91468 0.88443 0.92175 0.91833 0.92031 0.91856 0.91535 0.92137 0.90214 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.88 37.16 0.33 -2.61 16 2 C 0.11 2.74 2.66 -27.89 -0.07 2.67 16 3 H 0.04 1.14 8.01 -51.93 -0.42 0.73 16 4 C -0.52 -13.98 8.31 -34.44 -0.29 -14.27 16 5 H 0.06 1.73 7.71 -52.49 -0.40 1.32 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -24.56 11.39 55.43 0.63 -23.93 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 S -0.31 -6.65 20.38 -107.50 -2.19 -8.84 16 13 C -0.07 -1.37 3.47 -24.73 -0.09 -1.45 16 14 H 0.10 2.04 8.05 -51.93 -0.42 1.62 16 15 C 0.06 1.05 6.90 38.21 0.26 1.32 16 16 O -0.37 -6.36 10.86 -35.23 -0.38 -6.74 16 17 C 0.10 1.38 1.19 -90.01 -0.11 1.27 16 18 C -0.16 -1.96 8.62 37.16 0.32 -1.64 16 19 C -0.14 -1.67 8.67 37.16 0.32 -1.35 16 20 C -0.12 -1.86 5.88 -25.17 -0.15 -2.01 16 21 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 22 H 0.09 2.42 6.27 -51.93 -0.33 2.09 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 26 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.12 7.70 -51.93 -0.40 0.72 16 34 H 0.08 1.22 7.37 -51.93 -0.38 0.84 16 LS Contribution 288.08 15.07 4.34 4.34 Total: -1.00 -27.50 288.08 -7.88 -35.39 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.70 Total: 0.17 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 0.44 Total: -16.32 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.63 Total: -23.93 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.38 Total: -6.74 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -2.19 Total: -8.84 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.50 -7.88 -35.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705525270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.431 kcal (2) G-P(sol) polarization free energy of solvation -27.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds