Wall clock time and date at job start Mon Mar 30 2020 02:52:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08996 * 109.47005 * 2 1
4 4 C 1.50692 * 109.47317 * 120.00610 * 2 1 3
5 5 H 1.08000 * 120.00467 * 120.00177 * 4 2 1
6 6 C 1.37882 * 120.00194 * 299.99758 * 4 2 1
7 7 N 1.31513 * 119.99664 * 0.02562 * 6 4 2
8 8 Si 1.86795 * 120.00297 * 180.02562 * 6 4 2
9 9 H 1.48504 * 109.47257 * 180.02562 * 8 6 4
10 10 H 1.48501 * 109.47112 * 299.99992 * 8 6 4
11 11 H 1.48493 * 109.47290 * 60.00054 * 8 6 4
12 12 S 1.81401 * 109.46894 * 240.00363 * 2 1 3
13 13 C 1.81400 * 102.99952 * 173.17526 * 12 2 1
14 14 H 1.08998 * 110.80700 * 56.64788 * 13 12 2
15 15 C 1.54991 * 110.90903 * 293.01920 * 13 12 2
16 16 O 1.44379 * 103.49409 * 204.77467 * 15 13 12
17 17 C 1.43745 * 106.97100 * 40.06414 * 16 15 13
18 18 C 1.52997 * 109.88331 * 92.91082 * 17 16 15
19 19 C 1.53009 * 109.87725 * 214.06351 * 17 16 15
20 20 C 1.54163 * 107.29770 * 333.45333 * 17 16 15
21 21 H 1.09008 * 109.47034 * 186.39426 * 1 2 3
22 22 H 1.09005 * 109.47237 * 306.38675 * 1 2 3
23 23 H 1.08994 * 109.47341 * 66.39233 * 1 2 3
24 24 H 0.97002 * 120.00384 * 179.97438 * 7 6 4
25 25 H 1.09000 * 110.62156 * 323.28167 * 15 13 12
26 26 H 1.09006 * 110.61991 * 86.27727 * 15 13 12
27 27 H 1.09005 * 109.46761 * 61.45106 * 18 17 16
28 28 H 1.08999 * 109.47628 * 181.44989 * 18 17 16
29 29 H 1.09001 * 109.47150 * 301.45492 * 18 17 16
30 30 H 1.08998 * 109.46877 * 58.54180 * 19 17 16
31 31 H 1.08996 * 109.46931 * 178.54533 * 19 17 16
32 32 H 1.09001 * 109.46770 * 298.54717 * 19 17 16
33 33 H 1.08995 * 110.52176 * 243.39832 * 20 17 16
34 34 H 1.09004 * 110.48072 * 120.73595 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7105 1.2303
5 1 2.6533 -1.5886 1.1312
6 6 1.6993 -0.2396 2.4827
7 7 0.9428 0.8294 2.6035
8 14 2.3226 -1.1198 4.0078
9 1 1.8271 -0.4203 5.2204
10 1 1.8282 -2.5201 4.0079
11 1 3.8075 -1.1193 4.0075
12 16 2.1346 -0.8551 -1.4812
13 6 3.9252 -0.5730 -1.4128
14 1 4.3388 -0.9368 -0.4722
15 6 4.2573 0.9267 -1.6198
16 8 5.6082 0.9055 -2.1289
17 6 5.6929 -0.1964 -3.0481
18 6 5.4018 0.2884 -4.4697
19 6 7.0881 -0.8213 -2.9840
20 6 4.6349 -1.2328 -2.6201
21 1 -0.3633 -1.0213 0.1145
22 1 -0.3634 0.6097 0.8273
23 1 -0.3634 0.4115 -0.9416
24 1 0.7082 1.1606 3.4845
25 1 3.5797 1.3730 -2.3477
26 1 4.2126 1.4640 -0.6724
27 1 6.1464 1.0296 -4.7604
28 1 5.4424 -0.5564 -5.1573
29 1 4.4093 0.7377 -4.5043
30 1 7.2891 -1.1576 -1.9668
31 1 7.1369 -1.6716 -3.6642
32 1 7.8320 -0.0798 -3.2752
33 1 5.1131 -2.1649 -2.3190
34 1 3.9261 -1.4105 -3.4289
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000705525270.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:52:29
Heat of formation + Delta-G solvation = -67.820532 kcal
Electronic energy + Delta-G solvation = -14587.627976 eV
Core-core repulsion = 12225.007486 eV
Total energy + Delta-G solvation = -2362.620490 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.108 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.47769 -34.01795 -32.92466 -31.49328 -30.27878 -27.35475 -25.70017 -25.26344
-21.83050 -20.92280 -19.88084 -16.54737 -16.11943 -15.75080 -15.16349 -14.80545
-14.10749 -13.73638 -13.25716 -13.00961 -12.95390 -12.55945 -12.13032 -11.89469
-11.60571 -11.47505 -11.25274 -11.09128 -10.94738 -10.83406 -10.56809 -10.44175
-10.28166 -9.75535 -9.40893 -9.24912 -8.83909 -8.43058 -6.75615 -6.10647
-4.23878 2.68315 3.25347 3.29804 3.32431 3.78094 4.16951 4.34570
4.78705 4.93764 5.03146 5.16212 5.25951 5.36369 5.59487 5.65988
5.74007 5.80501 5.93891 5.96948 6.02849 6.18788 6.28592 6.36290
6.45078 6.66632 6.80906 6.88470 7.19835 7.39315 7.63873 7.83247
8.08775 8.76138 9.40932 10.90292
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.033614 B = 0.007630 C = 0.006891
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 832.783796 B = 3668.876911 C = 4062.433677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C 0.111 3.889
3 H 0.044 0.956
4 C -0.522 4.522
5 H 0.064 0.936
6 C 0.068 3.932
7 N -0.889 5.889
8 Si 0.897 3.103
9 H -0.286 1.286
10 H -0.275 1.275
11 H -0.276 1.276
12 S -0.311 6.311
13 C -0.073 4.073
14 H 0.099 0.901
15 C 0.058 3.942
16 O -0.371 6.371
17 C 0.098 3.902
18 C -0.161 4.161
19 C -0.141 4.141
20 C -0.123 4.123
21 H 0.038 0.962
22 H 0.094 0.906
23 H 0.018 0.982
24 H 0.264 0.736
25 H 0.067 0.933
26 H 0.097 0.903
27 H 0.059 0.941
28 H 0.063 0.937
29 H 0.061 0.939
30 H 0.062 0.938
31 H 0.066 0.934
32 H 0.060 0.940
33 H 0.079 0.921
34 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.275 -1.572 -9.588 12.137
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.017 4.017
3 H 0.062 0.938
4 C -0.561 4.561
5 H 0.082 0.918
6 C -0.135 4.135
7 N -0.527 5.527
8 Si 0.725 3.275
9 H -0.211 1.211
10 H -0.200 1.200
11 H -0.201 1.201
12 S -0.082 6.082
13 C -0.202 4.202
14 H 0.118 0.882
15 C -0.020 4.020
16 O -0.290 6.290
17 C 0.057 3.943
18 C -0.218 4.218
19 C -0.199 4.199
20 C -0.161 4.161
21 H 0.057 0.943
22 H 0.112 0.888
23 H 0.037 0.963
24 H 0.074 0.926
25 H 0.085 0.915
26 H 0.116 0.884
27 H 0.078 0.922
28 H 0.082 0.918
29 H 0.080 0.920
30 H 0.081 0.919
31 H 0.085 0.915
32 H 0.079 0.921
33 H 0.098 0.902
34 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 6.760 -1.880 -10.174 12.359
hybrid contribution 0.703 0.050 1.847 1.977
sum 7.463 -1.830 -8.327 11.331
Atomic orbital electron populations
1.21612 0.95524 1.01119 0.99937 1.20781 0.95645 0.96041 0.89184
0.93838 1.21266 1.32328 1.12806 0.89681 0.91794 1.24979 0.94745
0.94863 0.98941 1.69863 1.36140 1.22658 1.23989 0.86556 0.79260
0.79868 0.81844 1.21110 1.20025 1.20139 1.86069 1.03452 1.77944
1.40741 1.24349 0.96076 0.98139 1.01654 0.88218 1.23959 0.83040
0.95379 0.99620 1.88866 1.29949 1.49863 1.60367 1.22092 0.95578
0.86739 0.89889 1.22234 1.02363 1.01534 0.95702 1.21888 0.95162
1.00271 1.02555 1.22905 0.97114 0.98595 0.97511 0.94325 0.88803
0.96266 0.92569 0.91468 0.88443 0.92175 0.91833 0.92031 0.91856
0.91535 0.92137 0.90214 0.89987
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.94 8.88 37.16 0.33 -2.61 16
2 C 0.11 2.74 2.66 -27.89 -0.07 2.67 16
3 H 0.04 1.14 8.01 -51.93 -0.42 0.73 16
4 C -0.52 -13.98 8.31 -34.44 -0.29 -14.27 16
5 H 0.06 1.73 7.71 -52.49 -0.40 1.32 16
6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16
7 N -0.89 -24.56 11.39 55.43 0.63 -23.93 16
8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16
9 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
12 S -0.31 -6.65 20.38 -107.50 -2.19 -8.84 16
13 C -0.07 -1.37 3.47 -24.73 -0.09 -1.45 16
14 H 0.10 2.04 8.05 -51.93 -0.42 1.62 16
15 C 0.06 1.05 6.90 38.21 0.26 1.32 16
16 O -0.37 -6.36 10.86 -35.23 -0.38 -6.74 16
17 C 0.10 1.38 1.19 -90.01 -0.11 1.27 16
18 C -0.16 -1.96 8.62 37.16 0.32 -1.64 16
19 C -0.14 -1.67 8.67 37.16 0.32 -1.35 16
20 C -0.12 -1.86 5.88 -25.17 -0.15 -2.01 16
21 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16
22 H 0.09 2.42 6.27 -51.93 -0.33 2.09 16
23 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16
24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16
25 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16
26 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16
27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
29 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16
30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.08 1.12 7.70 -51.93 -0.40 0.72 16
34 H 0.08 1.22 7.37 -51.93 -0.38 0.84 16
LS Contribution 288.08 15.07 4.34 4.34
Total: -1.00 -27.50 288.08 -7.88 -35.39
By element:
Atomic # 1 Polarization: 5.87 SS G_CDS: -5.70 Total: 0.17 kcal
Atomic # 6 Polarization: -16.76 SS G_CDS: 0.44 Total: -16.32 kcal
Atomic # 7 Polarization: -24.56 SS G_CDS: 0.63 Total: -23.93 kcal
Atomic # 8 Polarization: -6.36 SS G_CDS: -0.38 Total: -6.74 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal
Atomic # 16 Polarization: -6.65 SS G_CDS: -2.19 Total: -8.84 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -27.50 -7.88 -35.39 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000705525270.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.431 kcal
(2) G-P(sol) polarization free energy of solvation -27.505 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.936 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.389 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds