Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47005 * 2 1 4 4 C 1.50692 * 109.47317 * 120.00610 * 2 1 3 5 5 H 1.08000 * 120.00467 * 120.00177 * 4 2 1 6 6 C 1.37882 * 120.00194 * 299.99758 * 4 2 1 7 7 N 1.31513 * 119.99664 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00297 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47257 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47112 * 299.99992 * 8 6 4 11 11 H 1.48493 * 109.47290 * 60.00054 * 8 6 4 12 12 S 1.81401 * 109.46894 * 240.00363 * 2 1 3 13 13 C 1.81400 * 102.99952 * 173.17526 * 12 2 1 14 14 H 1.08998 * 110.80700 * 56.64788 * 13 12 2 15 15 C 1.54991 * 110.90903 * 293.01920 * 13 12 2 16 16 O 1.44379 * 103.49409 * 204.77467 * 15 13 12 17 17 C 1.43745 * 106.97100 * 40.06414 * 16 15 13 18 18 C 1.52997 * 109.88331 * 92.91082 * 17 16 15 19 19 C 1.53009 * 109.87725 * 214.06351 * 17 16 15 20 20 C 1.54163 * 107.29770 * 333.45333 * 17 16 15 21 21 H 1.09008 * 109.47034 * 186.39426 * 1 2 3 22 22 H 1.09005 * 109.47237 * 306.38675 * 1 2 3 23 23 H 1.08994 * 109.47341 * 66.39233 * 1 2 3 24 24 H 0.97002 * 120.00384 * 179.97438 * 7 6 4 25 25 H 1.09000 * 110.62156 * 323.28167 * 15 13 12 26 26 H 1.09006 * 110.61991 * 86.27727 * 15 13 12 27 27 H 1.09005 * 109.46761 * 61.45106 * 18 17 16 28 28 H 1.08999 * 109.47628 * 181.44989 * 18 17 16 29 29 H 1.09001 * 109.47150 * 301.45492 * 18 17 16 30 30 H 1.08998 * 109.46877 * 58.54180 * 19 17 16 31 31 H 1.08996 * 109.46931 * 178.54533 * 19 17 16 32 32 H 1.09001 * 109.46770 * 298.54717 * 19 17 16 33 33 H 1.08995 * 110.52176 * 243.39832 * 20 17 16 34 34 H 1.09004 * 110.48072 * 120.73595 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6035 8 14 2.3226 -1.1198 4.0078 9 1 1.8271 -0.4203 5.2204 10 1 1.8282 -2.5201 4.0079 11 1 3.8075 -1.1193 4.0075 12 16 2.1346 -0.8551 -1.4812 13 6 3.9252 -0.5730 -1.4128 14 1 4.3388 -0.9368 -0.4722 15 6 4.2573 0.9267 -1.6198 16 8 5.6082 0.9055 -2.1289 17 6 5.6929 -0.1964 -3.0481 18 6 5.4018 0.2884 -4.4697 19 6 7.0881 -0.8213 -2.9840 20 6 4.6349 -1.2328 -2.6201 21 1 -0.3633 -1.0213 0.1145 22 1 -0.3634 0.6097 0.8273 23 1 -0.3634 0.4115 -0.9416 24 1 0.7082 1.1606 3.4845 25 1 3.5797 1.3730 -2.3477 26 1 4.2126 1.4640 -0.6724 27 1 6.1464 1.0296 -4.7604 28 1 5.4424 -0.5564 -5.1573 29 1 4.4093 0.7377 -4.5043 30 1 7.2891 -1.1576 -1.9668 31 1 7.1369 -1.6716 -3.6642 32 1 7.8320 -0.0798 -3.2752 33 1 5.1131 -2.1649 -2.3190 34 1 3.9261 -1.4105 -3.4289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705525270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = -82.407434 kcal Electronic energy + Delta-G solvation = -14588.260511 eV Core-core repulsion = 12225.007486 eV Total energy + Delta-G solvation = -2363.253025 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75125 -36.03984 -34.09066 -32.87432 -32.30766 -28.29710 -27.40763 -26.86780 -23.56557 -22.60133 -21.04878 -18.53263 -17.62958 -17.25481 -16.80346 -16.24727 -15.63426 -15.25205 -14.86967 -14.50632 -14.30101 -13.86909 -13.57186 -13.17172 -13.11982 -12.92931 -12.83190 -12.62567 -12.50409 -12.36569 -12.29193 -12.14453 -11.69390 -11.37827 -11.20792 -10.78074 -10.68446 -10.38795 -8.55121 -8.11267 -6.36484 1.04375 1.39232 1.39972 1.47538 1.95203 2.38661 2.90671 3.07917 3.49469 3.71275 3.91006 4.04884 4.12111 4.26172 4.60962 4.62517 4.68556 4.73979 4.79530 4.87213 4.90167 4.91221 4.93902 4.99674 5.03910 5.26454 5.35916 5.39473 5.60479 5.77006 5.95075 6.06101 6.66661 7.31112 8.83785 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.007630 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.783796 B = 3668.876911 C = 4062.433677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.102 3.898 3 H 0.020 0.980 4 C -0.536 4.536 5 H 0.056 0.944 6 C 0.025 3.975 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.273 1.273 12 S -0.298 6.298 13 C -0.073 4.073 14 H 0.078 0.922 15 C 0.066 3.934 16 O -0.384 6.384 17 C 0.090 3.910 18 C -0.158 4.158 19 C -0.139 4.139 20 C -0.115 4.115 21 H 0.032 0.968 22 H 0.073 0.927 23 H 0.038 0.962 24 H 0.266 0.734 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.440 -2.587 -10.653 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.026 4.026 3 H 0.038 0.962 4 C -0.575 4.575 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.198 1.198 12 S -0.069 6.069 13 C -0.203 4.203 14 H 0.097 0.903 15 C -0.013 4.013 16 O -0.304 6.304 17 C 0.050 3.950 18 C -0.215 4.215 19 C -0.196 4.196 20 C -0.153 4.153 21 H 0.052 0.948 22 H 0.091 0.909 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.927 -2.899 -11.251 14.065 hybrid contribution 0.390 0.368 2.114 2.181 sum 8.317 -2.531 -9.137 12.612 Atomic orbital electron populations 1.21455 0.95168 1.00401 1.00123 1.20613 0.96162 0.95115 0.90678 0.96190 1.21458 1.32458 1.12746 0.90880 0.92558 1.25703 0.94881 0.95504 1.01597 1.69971 1.36815 1.23629 1.24611 0.85635 0.78761 0.78887 0.78620 1.20495 1.19581 1.19787 1.85831 1.05693 1.77288 1.38075 1.24414 0.94127 0.99261 1.02492 0.90348 1.23738 0.83943 0.94651 0.98920 1.88859 1.28978 1.51272 1.61281 1.22415 0.96655 0.85637 0.90312 1.22225 1.01951 1.02676 0.94664 1.21916 0.93582 1.01269 1.02858 1.22944 0.97212 0.99315 0.95867 0.94835 0.90868 0.94352 0.92463 0.91074 0.90473 0.91365 0.89369 0.93128 0.92717 0.88821 0.91386 0.88708 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.45 8.88 71.98 0.64 -4.81 16 2 C 0.10 5.15 2.66 29.84 0.08 5.23 16 3 H 0.02 1.09 8.01 -2.39 -0.02 1.07 16 4 C -0.54 -29.14 8.31 25.60 0.21 -28.92 16 5 H 0.06 3.08 7.71 -2.91 -0.02 3.05 16 6 C 0.02 1.33 5.30 84.66 0.45 1.78 16 7 N -0.91 -51.11 11.39 21.45 0.24 -50.87 16 8 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 S -0.30 -12.63 20.38 -56.49 -1.15 -13.78 16 13 C -0.07 -2.73 3.47 31.89 0.11 -2.62 16 14 H 0.08 3.24 8.05 -2.39 -0.02 3.22 16 15 C 0.07 2.40 6.90 72.66 0.50 2.90 16 16 O -0.38 -12.81 10.86 -148.98 -1.62 -14.42 16 17 C 0.09 2.32 1.19 -10.40 -0.01 2.31 16 18 C -0.16 -3.37 8.62 71.98 0.62 -2.75 16 19 C -0.14 -2.86 8.67 71.99 0.62 -2.24 16 20 C -0.11 -3.24 5.88 31.61 0.19 -3.06 16 21 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 22 H 0.07 3.85 6.27 -2.38 -0.01 3.83 16 23 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 24 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.07 2.50 8.03 -2.39 -0.02 2.48 16 26 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 27 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 2.40 7.70 -2.39 -0.02 2.38 16 34 H 0.09 2.41 7.37 -2.39 -0.02 2.39 16 Total: -1.00 -58.32 288.08 3.96 -54.37 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.04 Total: 11.87 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 3.41 Total: -32.18 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.24 Total: -50.87 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -1.62 Total: -14.42 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -12.63 SS G_CDS: -1.15 Total: -13.78 kcal Total: -58.32 3.96 -54.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705525270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.042 kcal (2) G-P(sol) polarization free energy of solvation -58.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds