Wall clock time and date at job start Mon Mar 30 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46825 * 2 1 4 4 C 1.50701 * 109.47081 * 240.00134 * 2 1 3 5 5 H 1.07995 * 120.00067 * 240.00000 * 4 2 1 6 6 C 1.37875 * 120.00034 * 60.00084 * 4 2 1 7 7 N 1.31511 * 120.00111 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00045 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47182 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47223 * 119.99722 * 8 6 4 11 11 H 1.48502 * 109.47256 * 239.99752 * 8 6 4 12 12 S 1.81393 * 109.47156 * 120.00127 * 2 1 3 13 13 C 1.81402 * 103.00209 * 292.62696 * 12 2 1 14 14 H 1.09003 * 110.80493 * 57.16806 * 13 12 2 15 15 C 1.54996 * 110.93974 * 180.82283 * 13 12 2 16 16 O 1.44379 * 103.48876 * 155.23523 * 15 13 12 17 17 C 1.43746 * 106.97851 * 319.93511 * 16 15 13 18 18 C 1.52993 * 109.88249 * 267.09508 * 17 16 15 19 19 C 1.53000 * 110.00276 * 146.00541 * 17 16 15 20 20 C 1.54105 * 107.29075 * 26.51747 * 17 16 15 21 21 H 1.09003 * 109.47284 * 54.12405 * 1 2 3 22 22 H 1.09000 * 109.47187 * 174.12040 * 1 2 3 23 23 H 1.08999 * 109.47006 * 294.11766 * 1 2 3 24 24 H 0.97001 * 120.00267 * 180.02562 * 7 6 4 25 25 H 1.08999 * 110.61794 * 273.73220 * 15 13 12 26 26 H 1.08998 * 110.61591 * 36.73549 * 15 13 12 27 27 H 1.09000 * 109.47640 * 177.83231 * 18 17 16 28 28 H 1.09003 * 109.46863 * 297.83139 * 18 17 16 29 29 H 1.09000 * 109.47450 * 57.82451 * 18 17 16 30 30 H 1.08993 * 109.47702 * 302.09820 * 19 17 16 31 31 H 1.08998 * 109.46615 * 62.10370 * 19 17 16 32 32 H 1.09001 * 109.46908 * 182.09737 * 19 17 16 33 33 H 1.08999 * 110.49182 * 239.29537 * 20 17 16 34 34 H 1.09000 * 110.60252 * 116.69956 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2870 -3.6038 10 1 1.1660 -1.5866 -4.8160 11 1 3.1465 -0.1873 -4.8166 12 16 2.1346 -0.8551 1.4810 13 6 1.6296 0.2520 2.8263 14 1 0.5522 0.4164 2.8086 15 6 2.0817 -0.3041 4.2007 16 8 2.1659 0.8749 5.0298 17 6 2.7358 1.9173 4.2207 18 6 4.2540 1.9493 4.4070 19 6 2.1353 3.2696 4.6101 20 6 2.3948 1.5958 2.7526 21 1 -0.3634 0.6023 -0.8327 22 1 -0.3633 -1.0223 -0.1053 23 1 -0.3633 0.4199 0.9380 24 1 0.7081 1.1609 -3.4844 25 1 1.3410 -0.9992 4.5959 26 1 3.0560 -0.7857 4.1181 27 1 4.6833 2.7160 3.7619 28 1 4.4877 2.1771 5.4470 29 1 4.6729 0.9777 4.1449 30 1 1.0524 3.2339 4.4920 31 1 2.3805 3.4902 5.6490 32 1 2.5455 4.0480 3.9667 33 1 3.3059 1.4842 2.1648 34 1 1.7602 2.3733 2.3272 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705525271.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:31 Heat of formation + Delta-G solvation = -67.068627 kcal Electronic energy + Delta-G solvation = -14530.019838 eV Core-core repulsion = 12167.431954 eV Total energy + Delta-G solvation = -2362.587885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.56522 -34.04603 -32.98703 -31.65779 -30.25591 -27.34477 -25.71675 -25.32618 -21.75558 -21.23044 -19.89687 -16.68559 -16.15342 -15.75601 -15.24105 -14.76983 -14.17806 -13.79695 -13.30438 -13.08245 -12.95720 -12.41385 -12.16529 -11.91389 -11.79372 -11.56549 -11.20637 -11.11732 -10.99283 -10.86518 -10.59479 -10.39569 -10.36177 -9.79925 -9.54640 -9.29146 -8.73333 -8.45655 -6.73039 -6.17914 -4.25427 2.57659 3.22699 3.30617 3.36502 3.75422 4.07813 4.33235 4.74496 4.92525 5.01488 5.14535 5.21484 5.25904 5.49192 5.64753 5.71845 5.76076 5.90830 5.92004 5.96448 6.16518 6.22033 6.27655 6.39005 6.62621 6.78193 6.84011 7.08550 7.39023 7.63370 7.81972 8.06908 8.74524 9.38230 10.88556 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043629 B = 0.006503 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.622842 B = 4304.667216 C = 4389.439492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.115 3.885 3 H 0.043 0.957 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.282 1.282 12 S -0.293 6.293 13 C -0.094 4.094 14 H 0.091 0.909 15 C 0.074 3.926 16 O -0.370 6.370 17 C 0.098 3.902 18 C -0.161 4.161 19 C -0.141 4.141 20 C -0.137 4.137 21 H 0.088 0.912 22 H 0.041 0.959 23 H 0.009 0.991 24 H 0.264 0.736 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 2.973 10.813 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.012 4.012 3 H 0.061 0.939 4 C -0.545 4.545 5 H 0.084 0.916 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.208 1.208 12 S -0.064 6.064 13 C -0.223 4.223 14 H 0.109 0.891 15 C -0.004 4.004 16 O -0.290 6.290 17 C 0.058 3.942 18 C -0.218 4.218 19 C -0.199 4.199 20 C -0.177 4.177 21 H 0.107 0.893 22 H 0.060 0.940 23 H 0.028 0.972 24 H 0.074 0.926 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.595 2.128 10.978 11.479 hybrid contribution -0.395 0.714 -1.232 1.478 sum 2.200 2.842 9.745 10.387 Atomic orbital electron populations 1.22028 0.96908 1.01165 0.99359 1.20779 0.94937 0.96679 0.88821 0.93854 1.20727 1.32054 1.12962 0.88747 0.91573 1.24903 0.94783 0.94984 0.98859 1.69893 1.36256 1.22744 1.23839 0.86328 0.78689 0.79671 0.82172 1.19506 1.20774 1.20798 1.86522 1.78734 1.37324 1.03789 1.24555 1.02673 0.97537 0.97583 0.89105 1.23300 1.01200 0.88256 0.87611 1.88854 1.83445 1.20452 1.36239 1.22110 0.93094 0.88872 0.90154 1.22231 0.94990 1.02655 1.01949 1.21890 1.01417 0.94825 1.01748 1.23417 1.01580 0.96803 0.95896 0.89339 0.94018 0.97201 0.92641 0.88714 0.91440 0.91591 0.92282 0.92012 0.91976 0.92206 0.91320 0.89231 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.85 37.16 0.33 -2.89 16 2 C 0.12 2.87 2.64 -27.88 -0.07 2.79 16 3 H 0.04 1.15 7.96 -51.92 -0.41 0.73 16 4 C -0.51 -13.80 8.58 -34.44 -0.30 -14.09 16 5 H 0.07 1.84 7.71 -52.49 -0.40 1.44 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -24.57 11.38 55.43 0.63 -23.94 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 S -0.29 -6.27 20.38 -107.50 -2.19 -8.47 16 13 C -0.09 -1.65 3.40 -24.72 -0.08 -1.74 16 14 H 0.09 1.63 7.06 -51.93 -0.37 1.26 16 15 C 0.07 1.14 7.13 38.21 0.27 1.41 16 16 O -0.37 -5.76 10.86 -35.23 -0.38 -6.14 16 17 C 0.10 1.38 1.19 -90.05 -0.11 1.27 16 18 C -0.16 -2.01 8.61 37.15 0.32 -1.69 16 19 C -0.14 -1.70 8.68 37.16 0.32 -1.38 16 20 C -0.14 -2.22 5.59 -25.20 -0.14 -2.36 16 21 H 0.09 2.28 6.25 -51.93 -0.32 1.96 16 22 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.01 0.20 6.83 -51.93 -0.35 -0.16 16 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.07 1.03 8.02 -51.93 -0.42 0.62 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.54 7.37 -51.93 -0.38 1.16 16 34 H 0.08 1.25 7.70 -51.93 -0.40 0.85 16 LS Contribution 285.77 15.07 4.31 4.31 Total: -1.00 -27.68 285.77 -7.79 -35.47 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.58 Total: -0.22 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 0.45 Total: -16.93 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.63 Total: -23.94 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.38 Total: -6.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -2.19 Total: -8.47 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.68 -7.79 -35.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705525271.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.600 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds