Wall clock time and date at job start Mon Mar 30 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46825 * 2 1 4 4 C 1.50701 * 109.47081 * 240.00134 * 2 1 3 5 5 H 1.07995 * 120.00067 * 240.00000 * 4 2 1 6 6 C 1.37875 * 120.00034 * 60.00084 * 4 2 1 7 7 N 1.31511 * 120.00111 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00045 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47182 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47223 * 119.99722 * 8 6 4 11 11 H 1.48502 * 109.47256 * 239.99752 * 8 6 4 12 12 S 1.81393 * 109.47156 * 120.00127 * 2 1 3 13 13 C 1.81402 * 103.00209 * 292.62696 * 12 2 1 14 14 H 1.09003 * 110.80493 * 57.16806 * 13 12 2 15 15 C 1.54996 * 110.93974 * 180.82283 * 13 12 2 16 16 O 1.44379 * 103.48876 * 155.23523 * 15 13 12 17 17 C 1.43746 * 106.97851 * 319.93511 * 16 15 13 18 18 C 1.52993 * 109.88249 * 267.09508 * 17 16 15 19 19 C 1.53000 * 110.00276 * 146.00541 * 17 16 15 20 20 C 1.54105 * 107.29075 * 26.51747 * 17 16 15 21 21 H 1.09003 * 109.47284 * 54.12405 * 1 2 3 22 22 H 1.09000 * 109.47187 * 174.12040 * 1 2 3 23 23 H 1.08999 * 109.47006 * 294.11766 * 1 2 3 24 24 H 0.97001 * 120.00267 * 180.02562 * 7 6 4 25 25 H 1.08999 * 110.61794 * 273.73220 * 15 13 12 26 26 H 1.08998 * 110.61591 * 36.73549 * 15 13 12 27 27 H 1.09000 * 109.47640 * 177.83231 * 18 17 16 28 28 H 1.09003 * 109.46863 * 297.83139 * 18 17 16 29 29 H 1.09000 * 109.47450 * 57.82451 * 18 17 16 30 30 H 1.08993 * 109.47702 * 302.09820 * 19 17 16 31 31 H 1.08998 * 109.46615 * 62.10370 * 19 17 16 32 32 H 1.09001 * 109.46908 * 182.09737 * 19 17 16 33 33 H 1.08999 * 110.49182 * 239.29537 * 20 17 16 34 34 H 1.09000 * 110.60252 * 116.69956 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1464 -2.2870 -3.6038 10 1 1.1660 -1.5866 -4.8160 11 1 3.1465 -0.1873 -4.8166 12 16 2.1346 -0.8551 1.4810 13 6 1.6296 0.2520 2.8263 14 1 0.5522 0.4164 2.8086 15 6 2.0817 -0.3041 4.2007 16 8 2.1659 0.8749 5.0298 17 6 2.7358 1.9173 4.2207 18 6 4.2540 1.9493 4.4070 19 6 2.1353 3.2696 4.6101 20 6 2.3948 1.5958 2.7526 21 1 -0.3634 0.6023 -0.8327 22 1 -0.3633 -1.0223 -0.1053 23 1 -0.3633 0.4199 0.9380 24 1 0.7081 1.1609 -3.4844 25 1 1.3410 -0.9992 4.5959 26 1 3.0560 -0.7857 4.1181 27 1 4.6833 2.7160 3.7619 28 1 4.4877 2.1771 5.4470 29 1 4.6729 0.9777 4.1449 30 1 1.0524 3.2339 4.4920 31 1 2.3805 3.4902 5.6490 32 1 2.5455 4.0480 3.9667 33 1 3.3059 1.4842 2.1648 34 1 1.7602 2.3733 2.3272 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705525271.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:30 Heat of formation + Delta-G solvation = -81.839076 kcal Electronic energy + Delta-G solvation = -14530.660333 eV Core-core repulsion = 12167.431954 eV Total energy + Delta-G solvation = -2363.228379 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.77704 -36.06660 -34.11398 -33.04697 -32.21347 -28.32275 -27.40215 -26.89222 -23.40475 -22.91114 -21.07520 -18.56711 -17.61369 -17.27752 -16.80481 -16.22903 -15.60980 -15.29332 -14.92801 -14.44364 -14.32376 -13.94833 -13.62393 -13.21880 -13.10414 -12.91641 -12.86662 -12.69565 -12.51743 -12.41857 -12.26644 -12.05859 -11.72463 -11.51457 -11.23091 -10.74446 -10.66152 -10.35554 -8.47084 -8.23196 -6.38798 0.96271 1.39541 1.41842 1.54269 1.98413 2.38704 2.87037 3.06076 3.47950 3.69961 3.86191 3.99009 4.09181 4.23708 4.58172 4.63797 4.64090 4.70124 4.76831 4.81485 4.86187 4.88857 4.92498 4.96468 5.00124 5.23197 5.35339 5.35457 5.60033 5.75651 5.90780 6.04783 6.64187 7.28394 8.82442 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043629 B = 0.006503 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.622842 B = 4304.667216 C = 4389.439492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.112 3.888 3 H 0.019 0.981 4 C -0.529 4.529 5 H 0.054 0.946 6 C 0.025 3.975 7 N -0.912 5.912 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.275 1.275 12 S -0.301 6.301 13 C -0.089 4.089 14 H 0.088 0.912 15 C 0.080 3.920 16 O -0.375 6.375 17 C 0.097 3.903 18 C -0.159 4.159 19 C -0.140 4.140 20 C -0.136 4.136 21 H 0.067 0.933 22 H 0.035 0.965 23 H 0.030 0.970 24 H 0.267 0.733 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 3.140 11.658 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.016 4.016 3 H 0.037 0.963 4 C -0.568 4.568 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.550 5.550 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.201 1.201 12 S -0.072 6.072 13 C -0.218 4.218 14 H 0.107 0.893 15 C 0.003 3.997 16 O -0.295 6.295 17 C 0.057 3.943 18 C -0.216 4.216 19 C -0.197 4.197 20 C -0.176 4.176 21 H 0.085 0.915 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.130 0.870 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.942 2.299 11.830 12.405 hybrid contribution -0.500 0.694 -1.425 1.662 sum 2.442 2.993 10.405 11.099 Atomic orbital electron populations 1.21848 0.96319 1.00384 0.99577 1.20550 0.95360 0.95474 0.90218 0.96279 1.20958 1.32505 1.13016 0.90315 0.92756 1.25671 0.94793 0.95600 1.01546 1.69989 1.36735 1.23614 1.24664 0.85379 0.78313 0.78585 0.78661 1.19476 1.20026 1.20060 1.86368 1.78868 1.38195 1.03751 1.24640 1.02644 0.97598 0.96921 0.89316 1.23280 1.01716 0.88555 0.86163 1.88860 1.83689 1.20631 1.36288 1.22253 0.94317 0.89491 0.88283 1.22221 0.93646 1.02575 1.03176 1.21904 1.01076 0.93791 1.02923 1.23383 1.00688 0.95950 0.97571 0.91470 0.94628 0.95074 0.92328 0.87022 0.91338 0.90487 0.90793 0.92985 0.92421 0.90811 0.89980 0.90586 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.85 71.98 0.64 -5.21 16 2 C 0.11 5.65 2.64 29.85 0.08 5.73 16 3 H 0.02 1.04 7.96 -2.39 -0.02 1.02 16 4 C -0.53 -29.29 8.58 25.60 0.22 -29.07 16 5 H 0.05 3.07 7.71 -2.91 -0.02 3.05 16 6 C 0.03 1.37 5.30 84.65 0.45 1.82 16 7 N -0.91 -50.79 11.38 21.45 0.24 -50.55 16 8 Si 0.97 42.94 29.54 68.60 2.03 44.96 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 S -0.30 -12.88 20.38 -56.49 -1.15 -14.03 16 13 C -0.09 -3.03 3.40 31.90 0.11 -2.92 16 14 H 0.09 3.08 7.06 -2.39 -0.02 3.06 16 15 C 0.08 2.33 7.13 72.67 0.52 2.85 16 16 O -0.37 -10.82 10.86 -148.98 -1.62 -12.44 16 17 C 0.10 2.53 1.19 -10.42 -0.01 2.52 16 18 C -0.16 -3.63 8.61 71.98 0.62 -3.01 16 19 C -0.14 -3.02 8.68 71.98 0.62 -2.39 16 20 C -0.14 -4.31 5.59 31.59 0.18 -4.13 16 21 H 0.07 3.52 6.25 -2.39 -0.01 3.50 16 22 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.03 1.31 6.83 -2.39 -0.02 1.29 16 24 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 25 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.07 1.99 8.02 -2.39 -0.02 1.97 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.28 8.11 -2.39 -0.02 1.26 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.61 7.37 -2.39 -0.02 2.59 16 34 H 0.07 2.38 7.70 -2.39 -0.02 2.36 16 Total: -1.00 -58.25 285.77 3.97 -54.28 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.05 Total: 11.59 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.42 Total: -33.82 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.24 Total: -50.55 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.62 Total: -12.44 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -12.88 SS G_CDS: -1.15 Total: -14.03 kcal Total: -58.25 3.97 -54.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705525271.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.563 kcal (2) G-P(sol) polarization free energy of solvation -58.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds