Wall clock time and date at job start Mon Mar 30 2020 03:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86800 * 120.00635 * 2 1 4 4 H 1.48494 * 109.47395 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47008 * 300.00632 * 3 2 1 6 6 H 1.48504 * 109.46727 * 60.00127 * 3 2 1 7 7 C 1.38997 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00286 * 190.62539 * 7 2 1 9 9 N 1.37371 * 119.99935 * 10.62467 * 7 2 1 10 10 C 1.37454 * 125.05110 * 20.87644 * 9 7 2 11 11 C 1.35049 * 108.98987 * 180.02562 * 10 9 7 12 12 C 1.45027 * 106.24626 * 359.59952 * 11 10 9 13 13 C 1.34519 * 125.05127 * 200.55752 * 9 7 2 14 14 C 1.50733 * 131.55352 * 0.22561 * 13 9 7 15 15 C 1.52961 * 108.43566 * 150.41426 * 14 13 9 16 16 N 1.45483 * 113.27166 * 44.68546 * 15 14 13 17 17 C 1.30040 * 123.82475 * 325.96450 * 16 15 14 18 18 C 1.50699 * 121.42538 * 182.09330 * 17 16 15 19 19 C 1.53002 * 117.50085 * 63.71411 * 18 17 16 20 20 C 1.53000 * 117.49538 * 355.05687 * 18 17 16 21 21 H 0.97001 * 119.99656 * 359.97438 * 1 2 3 22 22 H 1.08003 * 125.50607 * 359.90773 * 10 9 7 23 23 H 1.07997 * 126.88060 * 179.86559 * 11 10 9 24 24 H 1.09008 * 109.64383 * 270.10063 * 14 13 9 25 25 H 1.08999 * 109.64090 * 30.72907 * 14 13 9 26 26 H 1.09001 * 108.72149 * 165.66594 * 15 14 13 27 27 H 1.08998 * 108.72365 * 283.83231 * 15 14 13 28 28 H 1.08998 * 115.55314 * 209.39518 * 18 17 16 29 29 H 1.08995 * 117.49837 * 0.02562 * 19 18 17 30 30 H 1.08994 * 117.49848 * 145.02561 * 19 18 17 31 31 H 1.09002 * 117.50100 * 214.98167 * 20 18 17 32 32 H 1.09003 * 117.49990 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2472 1.6176 0.0000 4 1 3.7071 1.3462 -0.0006 5 1 1.8884 2.3964 -1.2124 6 1 1.8884 2.3963 1.2126 7 6 2.0079 -1.2038 -0.0005 8 1 3.0740 -1.2119 0.1719 9 7 1.3387 -2.3831 -0.2204 10 6 0.1154 -2.4934 -0.8375 11 6 -0.2386 -3.7959 -0.8818 12 6 0.8443 -4.5321 -0.2583 13 6 1.7859 -3.6022 0.1308 14 6 3.0505 -4.0422 0.8229 15 6 2.7530 -5.3215 1.6068 16 7 1.9715 -6.2893 0.8523 17 6 1.0556 -5.9643 -0.0116 18 6 0.2454 -7.0126 -0.7297 19 6 -0.6646 -7.9049 0.1169 20 6 0.6173 -8.4777 -0.4928 21 1 -0.4850 0.8401 0.0004 22 1 -0.4691 -1.6711 -1.2229 23 1 -1.1445 -4.2074 -1.3017 24 1 3.8249 -4.2385 0.0813 25 1 3.3839 -3.2622 1.5074 26 1 3.6976 -5.7829 1.8950 27 1 2.2029 -5.0584 2.5102 28 1 -0.1044 -6.7367 -1.7245 29 1 -0.6776 -7.7334 1.1932 30 1 -1.6129 -8.2162 -0.3210 31 1 0.5117 -9.1657 -1.3316 32 1 1.4476 -8.6833 0.1827 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821283265.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:53 Heat of formation + Delta-G solvation = 79.819922 kcal Electronic energy + Delta-G solvation = -15562.526299 eV Core-core repulsion = 13103.156779 eV Total energy + Delta-G solvation = -2459.369519 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01136 -37.43681 -35.33454 -33.30656 -31.01128 -29.37688 -27.51691 -25.12363 -23.28561 -22.12888 -21.80240 -19.88818 -19.46504 -17.33759 -16.40013 -15.52774 -15.15947 -14.71830 -14.38474 -13.74659 -13.21633 -13.00407 -12.92318 -12.15222 -11.79190 -11.73230 -11.42357 -11.36745 -11.12658 -10.96475 -10.72615 -10.60566 -10.47196 -10.19267 -9.96163 -9.43123 -8.87554 -8.22839 -7.50282 -6.83372 -6.46133 -4.47951 2.44214 2.90387 2.98328 3.03745 3.73276 3.81762 4.17561 4.62527 4.81587 4.86254 4.87413 5.27157 5.35858 5.51985 5.70860 5.87234 5.95842 6.05431 6.13321 6.26788 6.33634 6.39842 6.51575 6.61049 6.64600 6.71398 6.92422 6.96153 7.12539 7.47581 7.61876 7.80593 8.35699 8.43288 8.87994 9.05624 9.45073 10.19592 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046169 B = 0.007098 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.315570 B = 3943.637994 C = 4407.996207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.050 3.950 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.355 4.355 8 H 0.107 0.893 9 N -0.227 5.227 10 C -0.008 4.008 11 C -0.200 4.200 12 C -0.262 4.262 13 C -0.016 4.016 14 C -0.058 4.058 15 C 0.072 3.928 16 N -0.589 5.589 17 C 0.300 3.700 18 C -0.099 4.099 19 C -0.162 4.162 20 C -0.165 4.165 21 H 0.280 0.720 22 H 0.165 0.835 23 H 0.120 0.880 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 -6.222 -0.718 6.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.161 4.161 3 Si 0.763 3.237 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.124 0.876 9 N 0.117 4.883 10 C -0.142 4.142 11 C -0.224 4.224 12 C -0.272 4.272 13 C -0.142 4.142 14 C -0.097 4.097 15 C -0.058 4.058 16 N -0.300 5.300 17 C 0.116 3.884 18 C -0.118 4.118 19 C -0.201 4.201 20 C -0.203 4.203 21 H 0.090 0.910 22 H 0.182 0.818 23 H 0.138 0.862 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.260 -6.427 -0.191 6.552 hybrid contribution 0.099 1.951 -0.129 1.957 sum 1.359 -4.477 -0.320 4.689 Atomic orbital electron populations 1.69910 1.06451 1.28875 1.41585 1.25560 0.95645 1.00702 0.94194 0.85687 0.79748 0.79764 0.78531 1.18699 1.19726 1.19928 1.20012 0.94063 0.82486 1.51770 0.87572 1.39563 1.13122 1.03697 1.31965 1.22123 0.89992 0.96915 1.05128 1.21153 0.99283 0.92638 1.09376 1.19516 0.99139 0.91642 1.16917 1.20085 0.99107 0.85910 1.09100 1.20242 0.93753 0.97353 0.98375 1.21623 0.97697 0.90183 0.96305 1.70879 1.10611 1.36773 1.11740 1.21355 0.88651 0.89368 0.89001 1.20813 1.01836 0.89571 0.99581 1.22889 0.94302 1.03258 0.99622 1.22917 0.99331 0.94890 1.03148 0.90952 0.81751 0.86221 0.92151 0.91137 0.90744 0.92388 0.86547 0.88901 0.88888 0.89284 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.67 10.84 55.50 0.60 -21.07 16 2 C 0.05 1.23 5.36 -17.50 -0.09 1.14 16 3 Si 0.94 18.78 29.57 -169.99 -5.03 13.76 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.36 -9.30 9.86 -14.79 -0.15 -9.45 16 8 H 0.11 2.64 7.85 -52.49 -0.41 2.23 16 9 N -0.23 -6.07 2.84 -57.34 -0.16 -6.23 16 10 C -0.01 -0.22 9.98 -16.16 -0.16 -0.38 16 11 C -0.20 -4.78 11.08 -38.03 -0.42 -5.20 16 12 C -0.26 -6.26 6.19 -103.83 -0.64 -6.90 16 13 C -0.02 -0.41 6.71 -81.51 -0.55 -0.95 16 14 C -0.06 -1.23 6.32 -27.89 -0.18 -1.41 16 15 C 0.07 1.42 6.96 -4.61 -0.03 1.39 16 16 N -0.59 -12.19 9.83 -55.68 -0.55 -12.73 16 17 C 0.30 6.29 6.72 -79.87 -0.54 5.75 16 18 C -0.10 -1.67 6.13 -91.77 -0.56 -2.23 16 19 C -0.16 -2.32 10.24 -26.69 -0.27 -2.59 16 20 C -0.17 -2.34 10.06 -26.69 -0.27 -2.61 16 21 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 22 H 0.17 4.32 6.36 -52.48 -0.33 3.98 16 23 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 24 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 25 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.61 7.64 -51.93 -0.40 1.21 16 LS Contribution 273.35 15.07 4.12 4.12 Total: -1.00 -28.48 273.35 -8.96 -37.44 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.08 Total: 8.16 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -3.86 Total: -23.45 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.11 Total: -40.03 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.48 -8.96 -37.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821283265.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.263 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds