Wall clock time and date at job start Mon Mar 30 2020 03:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31705 * 119.93521 * 2 1 4 4 C 1.32291 * 122.24089 * 179.97438 * 3 2 1 5 5 C 1.37727 * 121.49351 * 0.02562 * 4 3 2 6 6 C 1.39319 * 118.87431 * 359.97438 * 5 4 3 7 7 C 1.39293 * 119.92929 * 179.97438 * 2 1 3 8 8 C 1.46352 * 134.93098 * 359.97438 * 7 2 1 9 9 C 1.34277 * 106.95200 * 179.79062 * 8 7 2 10 10 N 1.36946 * 109.94863 * 0.37769 * 9 8 7 11 11 C 1.46505 * 125.04117 * 179.87544 * 10 9 8 12 12 C 1.52997 * 109.47212 * 264.69311 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46838 * 89.99826 * 17 15 13 19 19 H 1.48497 * 109.47419 * 209.99978 * 17 15 13 20 20 H 1.48499 * 109.47011 * 330.00539 * 17 15 13 21 21 H 1.09001 * 109.47072 * 270.02612 * 1 2 3 22 22 H 1.09000 * 109.46931 * 30.01751 * 1 2 3 23 23 H 1.08995 * 109.47396 * 150.02137 * 1 2 3 24 24 H 1.07997 * 119.25232 * 179.97438 * 4 3 2 25 25 H 1.07999 * 120.56550 * 180.02562 * 5 4 3 26 26 H 1.08002 * 126.52098 * 0.02562 * 8 7 2 27 27 H 1.07996 * 125.02389 * 180.21058 * 9 8 7 28 28 H 1.09002 * 109.47068 * 24.69371 * 11 10 9 29 29 H 1.09001 * 109.47372 * 144.69458 * 11 10 9 30 30 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 31 31 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 32 32 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1643 1.1413 0.0000 4 6 3.4861 1.1946 0.0005 5 6 4.2523 0.0501 0.0005 6 6 3.6127 -1.1877 0.0006 7 6 2.2020 -1.2072 0.0005 8 6 1.8198 -2.6199 0.0016 9 6 2.9574 -3.3333 -0.0030 10 7 4.0371 -2.4909 0.0015 11 6 5.4382 -2.9193 0.0010 12 6 5.9636 -2.9468 1.4377 13 6 7.4045 -3.3880 1.4373 14 1 7.8965 -3.6247 0.5054 15 6 8.0951 -3.4885 2.6264 16 7 7.4961 -3.1997 3.7611 17 14 9.8811 -4.0361 2.6260 18 1 10.7630 -2.8478 2.5011 19 1 10.1819 -4.7446 3.8959 20 1 10.1180 -4.9509 1.4805 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3634 -0.8901 -0.5135 24 1 3.9755 2.1573 0.0001 25 1 5.3305 0.1110 0.0014 26 1 0.8141 -3.0136 0.0019 27 1 3.0126 -4.4118 -0.0068 28 1 5.5130 -3.9166 -0.4324 29 1 6.0314 -2.2211 -0.5895 30 1 5.8887 -1.9494 1.8711 31 1 5.3704 -3.6449 2.0282 32 1 7.9820 -3.2701 4.5976 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821289271.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:53 Heat of formation + Delta-G solvation = 52.344826 kcal Electronic energy + Delta-G solvation = -15181.925940 eV Core-core repulsion = 12721.365011 eV Total energy + Delta-G solvation = -2460.560929 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.19887 -37.93907 -34.13829 -32.85894 -31.74321 -29.90205 -28.67408 -26.94391 -24.89392 -22.41903 -22.10544 -21.22174 -19.24740 -17.19401 -16.39829 -16.11055 -15.03148 -14.87311 -14.46871 -14.13394 -13.79587 -13.41322 -13.09990 -12.66207 -12.38634 -12.31557 -12.03578 -11.91154 -11.36645 -11.08486 -10.97246 -10.75745 -10.26238 -9.95380 -9.44636 -9.29425 -9.17552 -8.54704 -8.21334 -7.35283 -6.18361 -4.24772 1.28014 1.98089 3.01589 3.21326 3.25447 3.29200 3.33055 4.25448 4.31342 4.67213 4.94082 5.08901 5.17609 5.22885 5.48425 5.56366 5.75696 5.77953 5.83208 5.88053 6.03265 6.04724 6.08405 6.30009 6.41436 6.46709 6.95512 7.01207 7.35045 7.36960 7.58899 7.62265 7.81362 8.12658 8.46689 8.81130 9.41114 10.92570 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042032 B = 0.005848 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.000903 B = 4786.543531 C = 5091.414910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.174 3.826 3 N -0.513 5.513 4 C 0.090 3.910 5 C -0.173 4.173 6 C 0.133 3.867 7 C -0.165 4.165 8 C -0.206 4.206 9 C 0.060 3.940 10 N -0.462 5.462 11 C 0.105 3.895 12 C 0.012 3.988 13 C -0.531 4.531 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.152 0.848 25 H 0.131 0.869 26 H 0.145 0.855 27 H 0.168 0.832 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 2.461 -7.777 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.028 3.972 3 N -0.224 5.224 4 C -0.060 4.060 5 C -0.196 4.196 6 C 0.017 3.983 7 C -0.172 4.172 8 C -0.232 4.232 9 C -0.067 4.067 10 N -0.142 5.142 11 C -0.014 4.014 12 C -0.025 4.025 13 C -0.569 4.569 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.527 5.527 17 Si 0.725 3.275 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.169 0.831 25 H 0.148 0.852 26 H 0.163 0.837 27 H 0.185 0.815 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.818 3.137 -7.587 12.798 hybrid contribution 1.746 -1.193 0.260 2.131 sum -8.072 1.944 -7.327 11.073 Atomic orbital electron populations 1.20597 0.89329 1.02773 1.02647 1.20673 0.96083 0.86505 0.93904 1.67415 1.09830 1.28470 1.16715 1.22127 0.88942 0.97222 0.97671 1.21059 1.01133 0.90160 1.07262 1.18317 0.93243 0.86060 1.00641 1.19939 0.92772 0.94694 1.09832 1.21460 0.97739 0.90281 1.13728 1.21955 0.85630 0.96427 1.02667 1.44510 1.07735 1.03315 1.58639 1.22354 0.76078 1.00124 1.02878 1.19442 0.96236 0.98374 0.88487 1.20996 0.95856 1.46895 0.93202 0.92289 1.25010 0.98605 0.95014 0.95449 1.69975 1.36940 1.47871 0.97865 0.86505 0.84520 0.78865 0.77617 1.20447 1.21034 1.19726 0.90749 0.90953 0.91000 0.83080 0.85156 0.83709 0.81500 0.90054 0.90613 0.95886 0.95898 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.14 36.01 0.37 -0.79 16 2 C 0.17 2.84 6.83 -82.25 -0.56 2.28 16 3 N -0.51 -8.81 10.26 -9.27 -0.10 -8.90 16 4 C 0.09 1.47 11.14 -17.54 -0.20 1.28 16 5 C -0.17 -3.08 10.09 -39.37 -0.40 -3.48 16 6 C 0.13 2.52 6.85 -84.05 -0.58 1.94 16 7 C -0.17 -2.88 6.15 -105.16 -0.65 -3.53 16 8 C -0.21 -3.13 10.83 -37.72 -0.41 -3.54 16 9 C 0.06 0.96 11.28 -16.66 -0.19 0.77 16 10 N -0.46 -8.58 2.76 -114.37 -0.32 -8.90 16 11 C 0.11 2.06 5.96 -4.04 -0.02 2.04 16 12 C 0.01 0.30 5.30 -27.89 -0.15 0.16 16 13 C -0.53 -14.22 9.11 -34.44 -0.31 -14.53 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 17 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 0.74 7.93 -51.93 -0.41 0.33 16 24 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 25 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 26 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 281.33 15.07 4.24 4.24 Total: -1.00 -31.01 281.33 -7.83 -38.84 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.18 Total: 0.06 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -3.19 Total: -15.78 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.33 Total: -43.15 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.01 -7.83 -38.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821289271.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.180 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds