Wall clock time and date at job start Mon Mar 30 2020 03:07:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.31705 * 119.93521 * 2 1
4 4 C 1.32291 * 122.24089 * 179.97438 * 3 2 1
5 5 C 1.37727 * 121.49351 * 0.02562 * 4 3 2
6 6 C 1.39319 * 118.87431 * 359.97438 * 5 4 3
7 7 C 1.39293 * 119.92929 * 179.97438 * 2 1 3
8 8 C 1.46352 * 134.93098 * 359.97438 * 7 2 1
9 9 C 1.34277 * 106.95200 * 179.79062 * 8 7 2
10 10 N 1.36946 * 109.94863 * 0.37769 * 9 8 7
11 11 C 1.46505 * 125.04117 * 179.87544 * 10 9 8
12 12 C 1.52997 * 109.47212 * 264.69311 * 11 10 9
13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10
14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11
15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11
16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12
17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12
18 18 H 1.48506 * 109.46838 * 89.99826 * 17 15 13
19 19 H 1.48497 * 109.47419 * 209.99978 * 17 15 13
20 20 H 1.48499 * 109.47011 * 330.00539 * 17 15 13
21 21 H 1.09001 * 109.47072 * 270.02612 * 1 2 3
22 22 H 1.09000 * 109.46931 * 30.01751 * 1 2 3
23 23 H 1.08995 * 109.47396 * 150.02137 * 1 2 3
24 24 H 1.07997 * 119.25232 * 179.97438 * 4 3 2
25 25 H 1.07999 * 120.56550 * 180.02562 * 5 4 3
26 26 H 1.08002 * 126.52098 * 0.02562 * 8 7 2
27 27 H 1.07996 * 125.02389 * 180.21058 * 9 8 7
28 28 H 1.09002 * 109.47068 * 24.69371 * 11 10 9
29 29 H 1.09001 * 109.47372 * 144.69458 * 11 10 9
30 30 H 1.09002 * 109.47153 * 300.00008 * 12 11 10
31 31 H 1.08998 * 109.47533 * 59.99637 * 12 11 10
32 32 H 0.97002 * 119.99731 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.1643 1.1413 0.0000
4 6 3.4861 1.1946 0.0005
5 6 4.2523 0.0501 0.0005
6 6 3.6127 -1.1877 0.0006
7 6 2.2020 -1.2072 0.0005
8 6 1.8198 -2.6199 0.0016
9 6 2.9574 -3.3333 -0.0030
10 7 4.0371 -2.4909 0.0015
11 6 5.4382 -2.9193 0.0010
12 6 5.9636 -2.9468 1.4377
13 6 7.4045 -3.3880 1.4373
14 1 7.8965 -3.6247 0.5054
15 6 8.0951 -3.4885 2.6264
16 7 7.4961 -3.1997 3.7611
17 14 9.8811 -4.0361 2.6260
18 1 10.7630 -2.8478 2.5011
19 1 10.1819 -4.7446 3.8959
20 1 10.1180 -4.9509 1.4805
21 1 -0.3633 0.0005 1.0277
22 1 -0.3633 0.8898 -0.5141
23 1 -0.3634 -0.8901 -0.5135
24 1 3.9755 2.1573 0.0001
25 1 5.3305 0.1110 0.0014
26 1 0.8141 -3.0136 0.0019
27 1 3.0126 -4.4118 -0.0068
28 1 5.5130 -3.9166 -0.4324
29 1 6.0314 -2.2211 -0.5895
30 1 5.8887 -1.9494 1.8711
31 1 5.3704 -3.6449 2.0282
32 1 7.9820 -3.2701 4.5976
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000821289271.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:53
Heat of formation + Delta-G solvation = 34.887240 kcal
Electronic energy + Delta-G solvation = -15182.682958 eV
Core-core repulsion = 12721.365011 eV
Total energy + Delta-G solvation = -2461.317947 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-42.49572 -39.23987 -35.95164 -34.33873 -33.32145 -31.19682 -30.30628 -28.09845
-26.70706 -23.73986 -23.66459 -22.72512 -20.57687 -18.86511 -18.06442 -17.46504
-16.69120 -16.34638 -15.93701 -15.48454 -15.26267 -14.74909 -14.45763 -14.25188
-13.95491 -13.56792 -13.37782 -12.99961 -12.91499 -12.88323 -12.51391 -12.25513
-12.06884 -11.79649 -11.46506 -10.68057 -10.59788 -10.48799 -9.57459 -8.64847
-8.28772 -6.43481 0.00954 0.63394 1.39086 1.40061 1.51298 1.76778
1.94476 2.37106 2.96425 3.05498 3.52079 3.67455 3.83624 3.96426
4.16144 4.27994 4.39807 4.58009 4.61212 4.65123 4.75439 4.83912
4.89041 5.01110 5.17578 5.27544 5.30826 5.35079 5.64750 5.73634
5.80505 6.00408 6.19457 6.37343 6.73088 7.18196 7.27985 8.82916
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.042032 B = 0.005848 C = 0.005498
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 666.000903 B = 4786.543531 C = 5091.414910
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.093 4.093
2 C 0.169 3.831
3 N -0.529 5.529
4 C 0.091 3.909
5 C -0.198 4.198
6 C 0.101 3.899
7 C -0.184 4.184
8 C -0.193 4.193
9 C 0.042 3.958
10 N -0.476 5.476
11 C 0.122 3.878
12 C 0.023 3.977
13 C -0.545 4.545
14 H 0.073 0.927
15 C 0.003 3.997
16 N -0.933 5.933
17 Si 0.971 3.029
18 H -0.273 1.273
19 H -0.284 1.284
20 H -0.257 1.257
21 H 0.086 0.914
22 H 0.081 0.919
23 H 0.093 0.907
24 H 0.178 0.822
25 H 0.126 0.874
26 H 0.183 0.817
27 H 0.196 0.804
28 H 0.103 0.897
29 H 0.079 0.921
30 H -0.016 1.016
31 H -0.006 1.006
32 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.404 1.781 -8.863 13.783
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.024 3.976
3 N -0.241 5.241
4 C -0.058 4.058
5 C -0.221 4.221
6 C -0.014 4.014
7 C -0.192 4.192
8 C -0.218 4.218
9 C -0.083 4.083
10 N -0.157 5.157
11 C 0.002 3.998
12 C -0.015 4.015
13 C -0.583 4.583
14 H 0.091 0.909
15 C -0.195 4.195
16 N -0.572 5.572
17 Si 0.795 3.205
18 H -0.199 1.199
19 H -0.209 1.209
20 H -0.181 1.181
21 H 0.104 0.896
22 H 0.100 0.900
23 H 0.111 0.889
24 H 0.195 0.805
25 H 0.144 0.856
26 H 0.200 0.800
27 H 0.213 0.787
28 H 0.121 0.879
29 H 0.097 0.903
30 H 0.003 0.997
31 H 0.013 0.987
32 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -10.441 2.452 -8.696 13.808
hybrid contribution 1.838 -0.924 0.608 2.146
sum -8.603 1.527 -8.088 11.906
Atomic orbital electron populations
1.20716 0.86164 1.04343 1.03801 1.21399 0.98181 0.85910 0.92108
1.67541 1.09993 1.29011 1.17518 1.22569 0.89029 0.97930 0.96280
1.21207 1.01234 0.90745 1.08963 1.18763 0.94610 0.86479 1.01570
1.20351 0.92265 0.96271 1.10297 1.21916 0.99188 0.88944 1.11734
1.22578 0.85100 0.97747 1.02829 1.44491 1.07640 1.03751 1.59784
1.21977 0.77186 1.01510 0.99159 1.19224 0.95727 0.95104 0.91402
1.21476 0.96831 1.46186 0.93793 0.90902 1.26011 1.03519 0.95001
0.95018 1.70125 1.39029 1.49433 0.98654 0.85356 0.78516 0.78658
0.77986 1.19870 1.20948 1.18063 0.89576 0.89997 0.88865 0.80471
0.85564 0.80016 0.78683 0.87856 0.90270 0.99738 0.98732 0.92621
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.99 10.14 71.24 0.72 -1.26 16
2 C 0.17 5.30 6.83 42.83 0.29 5.59 16
3 N -0.53 -17.74 10.26 -183.25 -1.88 -19.62 16
4 C 0.09 2.99 11.14 84.50 0.94 3.93 16
5 C -0.20 -7.26 10.09 22.41 0.23 -7.03 16
6 C 0.10 3.86 6.85 39.28 0.27 4.13 16
7 C -0.18 -6.25 6.15 -20.22 -0.12 -6.38 16
8 C -0.19 -5.41 10.83 23.48 0.25 -5.16 16
9 C 0.04 1.29 11.28 82.99 0.94 2.22 16
10 N -0.48 -17.64 2.76 -515.76 -1.43 -19.07 16
11 C 0.12 4.80 5.96 86.38 0.51 5.31 16
12 C 0.02 1.19 5.30 29.85 0.16 1.35 16
13 C -0.54 -29.39 9.11 25.60 0.23 -29.15 16
14 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16
15 C 0.00 0.17 5.46 84.65 0.46 0.64 16
16 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16
17 Si 0.97 42.60 29.54 68.60 2.03 44.63 16
18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16
20 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16
21 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16
22 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16
23 H 0.09 1.58 7.93 -2.39 -0.02 1.56 16
24 H 0.18 4.59 8.06 -2.91 -0.02 4.57 16
25 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16
26 H 0.18 3.60 8.06 -2.91 -0.02 3.57 16
27 H 0.20 4.55 8.06 -2.91 -0.02 4.52 16
28 H 0.10 3.57 8.12 -2.39 -0.02 3.55 16
29 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16
30 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16
31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16
32 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16
Total: -1.00 -68.07 281.33 4.99 -63.08
By element:
Atomic # 1 Polarization: 11.55 SS G_CDS: 1.10 Total: 12.65 kcal
Atomic # 6 Polarization: -30.70 SS G_CDS: 4.88 Total: -25.82 kcal
Atomic # 7 Polarization: -91.52 SS G_CDS: -3.02 Total: -94.54 kcal
Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal
Total: -68.07 4.99 -63.08 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000821289271.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.964 kcal
(2) G-P(sol) polarization free energy of solvation -68.065 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.887 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds