Wall clock time and date at job start Mon Mar 30 2020 03:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31705 * 119.93521 * 2 1 4 4 C 1.32291 * 122.24089 * 179.97438 * 3 2 1 5 5 C 1.37727 * 121.49351 * 0.02562 * 4 3 2 6 6 C 1.39319 * 118.87431 * 359.97438 * 5 4 3 7 7 C 1.39293 * 119.92929 * 179.97438 * 2 1 3 8 8 C 1.46352 * 134.93098 * 359.97438 * 7 2 1 9 9 C 1.34277 * 106.95200 * 179.79062 * 8 7 2 10 10 N 1.36946 * 109.94863 * 0.37769 * 9 8 7 11 11 C 1.46505 * 125.04117 * 179.87544 * 10 9 8 12 12 C 1.52997 * 109.47212 * 264.69311 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46838 * 89.99826 * 17 15 13 19 19 H 1.48497 * 109.47419 * 209.99978 * 17 15 13 20 20 H 1.48499 * 109.47011 * 330.00539 * 17 15 13 21 21 H 1.09001 * 109.47072 * 270.02612 * 1 2 3 22 22 H 1.09000 * 109.46931 * 30.01751 * 1 2 3 23 23 H 1.08995 * 109.47396 * 150.02137 * 1 2 3 24 24 H 1.07997 * 119.25232 * 179.97438 * 4 3 2 25 25 H 1.07999 * 120.56550 * 180.02562 * 5 4 3 26 26 H 1.08002 * 126.52098 * 0.02562 * 8 7 2 27 27 H 1.07996 * 125.02389 * 180.21058 * 9 8 7 28 28 H 1.09002 * 109.47068 * 24.69371 * 11 10 9 29 29 H 1.09001 * 109.47372 * 144.69458 * 11 10 9 30 30 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 31 31 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 32 32 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1643 1.1413 0.0000 4 6 3.4861 1.1946 0.0005 5 6 4.2523 0.0501 0.0005 6 6 3.6127 -1.1877 0.0006 7 6 2.2020 -1.2072 0.0005 8 6 1.8198 -2.6199 0.0016 9 6 2.9574 -3.3333 -0.0030 10 7 4.0371 -2.4909 0.0015 11 6 5.4382 -2.9193 0.0010 12 6 5.9636 -2.9468 1.4377 13 6 7.4045 -3.3880 1.4373 14 1 7.8965 -3.6247 0.5054 15 6 8.0951 -3.4885 2.6264 16 7 7.4961 -3.1997 3.7611 17 14 9.8811 -4.0361 2.6260 18 1 10.7630 -2.8478 2.5011 19 1 10.1819 -4.7446 3.8959 20 1 10.1180 -4.9509 1.4805 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3634 -0.8901 -0.5135 24 1 3.9755 2.1573 0.0001 25 1 5.3305 0.1110 0.0014 26 1 0.8141 -3.0136 0.0019 27 1 3.0126 -4.4118 -0.0068 28 1 5.5130 -3.9166 -0.4324 29 1 6.0314 -2.2211 -0.5895 30 1 5.8887 -1.9494 1.8711 31 1 5.3704 -3.6449 2.0282 32 1 7.9820 -3.2701 4.5976 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821289271.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:53 Heat of formation + Delta-G solvation = 34.887240 kcal Electronic energy + Delta-G solvation = -15182.682958 eV Core-core repulsion = 12721.365011 eV Total energy + Delta-G solvation = -2461.317947 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.49572 -39.23987 -35.95164 -34.33873 -33.32145 -31.19682 -30.30628 -28.09845 -26.70706 -23.73986 -23.66459 -22.72512 -20.57687 -18.86511 -18.06442 -17.46504 -16.69120 -16.34638 -15.93701 -15.48454 -15.26267 -14.74909 -14.45763 -14.25188 -13.95491 -13.56792 -13.37782 -12.99961 -12.91499 -12.88323 -12.51391 -12.25513 -12.06884 -11.79649 -11.46506 -10.68057 -10.59788 -10.48799 -9.57459 -8.64847 -8.28772 -6.43481 0.00954 0.63394 1.39086 1.40061 1.51298 1.76778 1.94476 2.37106 2.96425 3.05498 3.52079 3.67455 3.83624 3.96426 4.16144 4.27994 4.39807 4.58009 4.61212 4.65123 4.75439 4.83912 4.89041 5.01110 5.17578 5.27544 5.30826 5.35079 5.64750 5.73634 5.80505 6.00408 6.19457 6.37343 6.73088 7.18196 7.27985 8.82916 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042032 B = 0.005848 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.000903 B = 4786.543531 C = 5091.414910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.169 3.831 3 N -0.529 5.529 4 C 0.091 3.909 5 C -0.198 4.198 6 C 0.101 3.899 7 C -0.184 4.184 8 C -0.193 4.193 9 C 0.042 3.958 10 N -0.476 5.476 11 C 0.122 3.878 12 C 0.023 3.977 13 C -0.545 4.545 14 H 0.073 0.927 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.971 3.029 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.257 1.257 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.178 0.822 25 H 0.126 0.874 26 H 0.183 0.817 27 H 0.196 0.804 28 H 0.103 0.897 29 H 0.079 0.921 30 H -0.016 1.016 31 H -0.006 1.006 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.404 1.781 -8.863 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.024 3.976 3 N -0.241 5.241 4 C -0.058 4.058 5 C -0.221 4.221 6 C -0.014 4.014 7 C -0.192 4.192 8 C -0.218 4.218 9 C -0.083 4.083 10 N -0.157 5.157 11 C 0.002 3.998 12 C -0.015 4.015 13 C -0.583 4.583 14 H 0.091 0.909 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.795 3.205 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.181 1.181 21 H 0.104 0.896 22 H 0.100 0.900 23 H 0.111 0.889 24 H 0.195 0.805 25 H 0.144 0.856 26 H 0.200 0.800 27 H 0.213 0.787 28 H 0.121 0.879 29 H 0.097 0.903 30 H 0.003 0.997 31 H 0.013 0.987 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.441 2.452 -8.696 13.808 hybrid contribution 1.838 -0.924 0.608 2.146 sum -8.603 1.527 -8.088 11.906 Atomic orbital electron populations 1.20716 0.86164 1.04343 1.03801 1.21399 0.98181 0.85910 0.92108 1.67541 1.09993 1.29011 1.17518 1.22569 0.89029 0.97930 0.96280 1.21207 1.01234 0.90745 1.08963 1.18763 0.94610 0.86479 1.01570 1.20351 0.92265 0.96271 1.10297 1.21916 0.99188 0.88944 1.11734 1.22578 0.85100 0.97747 1.02829 1.44491 1.07640 1.03751 1.59784 1.21977 0.77186 1.01510 0.99159 1.19224 0.95727 0.95104 0.91402 1.21476 0.96831 1.46186 0.93793 0.90902 1.26011 1.03519 0.95001 0.95018 1.70125 1.39029 1.49433 0.98654 0.85356 0.78516 0.78658 0.77986 1.19870 1.20948 1.18063 0.89576 0.89997 0.88865 0.80471 0.85564 0.80016 0.78683 0.87856 0.90270 0.99738 0.98732 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 10.14 71.24 0.72 -1.26 16 2 C 0.17 5.30 6.83 42.83 0.29 5.59 16 3 N -0.53 -17.74 10.26 -183.25 -1.88 -19.62 16 4 C 0.09 2.99 11.14 84.50 0.94 3.93 16 5 C -0.20 -7.26 10.09 22.41 0.23 -7.03 16 6 C 0.10 3.86 6.85 39.28 0.27 4.13 16 7 C -0.18 -6.25 6.15 -20.22 -0.12 -6.38 16 8 C -0.19 -5.41 10.83 23.48 0.25 -5.16 16 9 C 0.04 1.29 11.28 82.99 0.94 2.22 16 10 N -0.48 -17.64 2.76 -515.76 -1.43 -19.07 16 11 C 0.12 4.80 5.96 86.38 0.51 5.31 16 12 C 0.02 1.19 5.30 29.85 0.16 1.35 16 13 C -0.54 -29.39 9.11 25.60 0.23 -29.15 16 14 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 15 C 0.00 0.17 5.46 84.65 0.46 0.64 16 16 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 17 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 21 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.09 1.58 7.93 -2.39 -0.02 1.56 16 24 H 0.18 4.59 8.06 -2.91 -0.02 4.57 16 25 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 26 H 0.18 3.60 8.06 -2.91 -0.02 3.57 16 27 H 0.20 4.55 8.06 -2.91 -0.02 4.52 16 28 H 0.10 3.57 8.12 -2.39 -0.02 3.55 16 29 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 30 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -68.07 281.33 4.99 -63.08 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.10 Total: 12.65 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.88 Total: -25.82 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -3.02 Total: -94.54 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -68.07 4.99 -63.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821289271.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.964 kcal (2) G-P(sol) polarization free energy of solvation -68.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds