Wall clock time and date at job start Mon Mar 30 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 C 1.52998 * 109.47087 * 180.02562 * 15 13 12 17 17 F 1.39898 * 109.46927 * 180.02562 * 16 15 13 18 18 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 19 19 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 20 20 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 22 22 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 23 23 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 24 24 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 25 25 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 26 26 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 27 27 H 1.08998 * 109.46844 * 299.99963 * 16 15 13 28 28 H 1.08994 * 109.47046 * 59.99876 * 16 15 13 29 29 H 1.08996 * 109.61476 * 295.47839 * 18 12 11 30 30 H 1.09010 * 109.75120 * 175.04934 * 18 12 11 31 31 H 1.09003 * 109.61422 * 354.94072 * 19 9 7 32 32 H 1.08999 * 109.61487 * 115.28316 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 6 -0.0723 -8.1641 2.2206 17 9 0.3561 -9.3863 1.6917 18 6 0.5344 -3.2876 2.4474 19 6 0.2343 -2.3368 1.2819 20 1 -0.4850 0.8401 -0.0004 21 1 1.0134 -4.0707 -0.8208 22 1 2.7052 -3.5085 -0.8012 23 1 3.0125 -4.2759 1.4845 24 1 2.2517 -5.6159 0.5906 25 1 0.7252 -7.0092 0.5866 26 1 1.8423 -7.2118 1.9575 27 1 0.0068 -8.1911 3.3073 28 1 -1.1097 -7.9883 1.9361 29 1 1.3246 -2.8665 3.0689 30 1 -0.3658 -3.4283 3.0458 31 1 0.0946 -1.3248 1.6621 32 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900776419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:02 Heat of formation + Delta-G solvation = -64.463976 kcal Electronic energy + Delta-G solvation = -16456.582205 eV Core-core repulsion = 13560.186841 eV Total energy + Delta-G solvation = -2896.395364 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.66771 -39.70860 -36.91112 -33.97876 -32.24724 -31.22944 -30.10013 -27.04384 -24.43820 -23.48031 -22.53261 -20.48266 -18.65220 -17.42476 -16.51221 -16.32158 -15.78220 -15.11077 -14.86364 -14.73092 -14.44074 -13.72934 -13.57761 -13.32070 -12.96002 -12.87388 -12.09416 -11.88519 -11.36100 -11.14301 -10.86620 -10.82552 -10.78136 -10.62924 -10.30184 -10.01210 -9.92239 -9.49046 -8.63668 -8.32332 -6.76714 -5.89105 -3.34947 2.84672 3.30483 3.32568 3.39218 3.40110 4.40057 4.53536 4.58635 4.77783 5.06150 5.16199 5.28202 5.40492 5.54600 5.67279 5.70373 5.82731 5.89578 6.07872 6.27158 6.32341 6.43627 6.63324 6.79149 7.19415 7.49066 7.67904 7.80713 8.31842 8.42548 9.07466 9.70108 10.26644 11.18426 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.062147 B = 0.005891 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.438497 B = 4751.505247 C = 4974.873998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.086 3.914 12 N -0.594 5.594 13 C 0.512 3.488 14 O -0.559 6.559 15 C -0.173 4.173 16 C 0.077 3.923 17 F -0.221 7.221 18 C 0.086 3.914 19 C 0.158 3.842 20 H 0.257 0.743 21 H 0.024 0.976 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -11.153 2.786 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.038 4.038 12 N -0.326 5.326 13 C 0.300 3.700 14 O -0.439 6.439 15 C -0.213 4.213 16 C 0.022 3.978 17 F -0.202 7.202 18 C -0.037 4.037 19 C 0.032 3.968 20 H 0.067 0.933 21 H 0.042 0.958 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.475 -10.969 3.152 11.678 hybrid contribution 0.541 0.902 -0.184 1.068 sum 3.016 -10.067 2.967 10.920 Atomic orbital electron populations 1.70014 1.05361 1.25960 1.53135 1.25095 0.95292 0.98630 1.00400 0.86327 0.78907 0.83062 0.78195 1.20792 1.21551 1.20900 1.19150 0.92728 0.84662 1.42441 0.91469 1.44011 1.36547 1.01620 1.49217 1.21367 0.98513 0.87425 0.92417 1.22517 0.88379 1.00476 0.92468 1.48078 1.32448 1.06965 1.45088 1.20221 0.82907 0.85318 0.81589 1.90666 1.29092 1.87055 1.37046 1.22202 1.02262 0.93342 1.03530 1.21668 0.98861 0.78103 0.99162 1.92752 1.92001 1.46576 1.88857 1.22527 0.99908 0.82722 0.98532 1.21196 0.89036 0.98630 0.87982 0.93332 0.95817 0.91365 0.91385 0.90790 0.87822 0.88058 0.90012 0.89885 0.92093 0.90060 0.88201 0.95827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 11.20 55.49 0.62 -24.86 16 2 C 0.01 0.13 4.91 -17.43 -0.09 0.05 16 3 Si 0.91 20.96 29.59 -169.99 -5.03 15.93 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.82 9.57 -15.06 -0.14 -6.97 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.15 2.96 -171.77 -0.51 -14.65 16 10 C 0.13 2.49 6.70 -3.37 -0.02 2.47 16 11 C 0.09 1.34 6.52 -3.37 -0.02 1.31 16 12 N -0.59 -10.38 2.95 -172.21 -0.51 -10.88 16 13 C 0.51 8.41 7.70 -10.98 -0.08 8.32 16 14 O -0.56 -10.82 15.39 5.56 0.09 -10.73 16 15 C -0.17 -2.07 4.50 -27.88 -0.13 -2.20 16 16 C 0.08 0.90 6.84 37.16 0.25 1.16 16 17 F -0.22 -2.76 17.36 2.25 0.04 -2.72 16 18 C 0.09 1.70 6.59 -3.60 -0.02 1.68 16 19 C 0.16 3.70 5.51 -3.59 -0.02 3.68 16 20 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.07 0.88 5.91 -51.93 -0.31 0.57 16 25 H 0.10 1.14 7.72 -51.93 -0.40 0.74 16 26 H 0.10 1.03 7.91 -51.92 -0.41 0.62 16 27 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 28 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.60 7.00 -51.92 -0.36 1.24 16 31 H 0.10 2.59 6.00 -51.93 -0.31 2.28 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 267.04 15.07 4.02 4.02 Total: -1.00 -30.15 267.04 -5.84 -35.98 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.29 Total: -1.59 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -0.27 Total: 9.51 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.39 Total: -50.40 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.15 -5.84 -35.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900776419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.481 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds