Wall clock time and date at job start Mon Mar 30 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 C 1.52998 * 109.47087 * 180.02562 * 15 13 12 17 17 F 1.39898 * 109.46927 * 180.02562 * 16 15 13 18 18 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 19 19 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 20 20 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 22 22 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 23 23 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 24 24 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 25 25 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 26 26 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 27 27 H 1.08998 * 109.46844 * 299.99963 * 16 15 13 28 28 H 1.08994 * 109.47046 * 59.99876 * 16 15 13 29 29 H 1.08996 * 109.61476 * 295.47839 * 18 12 11 30 30 H 1.09010 * 109.75120 * 175.04934 * 18 12 11 31 31 H 1.09003 * 109.61422 * 354.94072 * 19 9 7 32 32 H 1.08999 * 109.61487 * 115.28316 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 6 -0.0723 -8.1641 2.2206 17 9 0.3561 -9.3863 1.6917 18 6 0.5344 -3.2876 2.4474 19 6 0.2343 -2.3368 1.2819 20 1 -0.4850 0.8401 -0.0004 21 1 1.0134 -4.0707 -0.8208 22 1 2.7052 -3.5085 -0.8012 23 1 3.0125 -4.2759 1.4845 24 1 2.2517 -5.6159 0.5906 25 1 0.7252 -7.0092 0.5866 26 1 1.8423 -7.2118 1.9575 27 1 0.0068 -8.1911 3.3073 28 1 -1.1097 -7.9883 1.9361 29 1 1.3246 -2.8665 3.0689 30 1 -0.3658 -3.4283 3.0458 31 1 0.0946 -1.3248 1.6621 32 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900776419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:02 Heat of formation + Delta-G solvation = -83.693342 kcal Electronic energy + Delta-G solvation = -16457.416053 eV Core-core repulsion = 13560.186841 eV Total energy + Delta-G solvation = -2897.229211 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.60666 -41.08371 -38.49948 -35.66704 -33.45381 -33.00915 -31.61734 -28.73220 -25.90961 -24.99851 -23.99243 -22.04547 -20.11236 -18.89071 -17.96014 -17.44753 -17.10615 -16.77579 -16.11817 -16.06756 -15.59790 -15.48640 -15.19914 -15.00168 -14.29413 -14.23442 -13.41004 -13.30185 -13.16066 -12.65016 -12.50154 -12.33639 -12.16228 -12.01837 -11.83320 -11.74573 -11.69237 -10.87782 -10.60308 -9.85003 -8.67121 -7.89352 -5.38279 1.48502 1.51056 1.57229 1.57979 1.99298 2.51039 3.25926 3.40344 3.57864 3.61895 3.89844 4.13640 4.23890 4.25594 4.40141 4.49625 4.54372 4.62632 4.69758 4.80463 4.87651 5.01218 5.06267 5.24764 5.44547 5.59692 5.66328 6.34667 6.48096 7.08478 7.11344 7.78687 8.31499 9.15850 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.062147 B = 0.005891 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.438497 B = 4751.505247 C = 4974.873998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.265 4.265 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.123 3.877 11 C 0.097 3.903 12 N -0.602 5.602 13 C 0.510 3.490 14 O -0.592 6.592 15 C -0.162 4.162 16 C 0.080 3.920 17 F -0.223 7.223 18 C 0.102 3.898 19 C 0.169 3.831 20 H 0.251 0.749 21 H 0.017 0.983 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.068 0.932 32 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -12.714 2.696 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.395 4.395 8 H 0.094 0.906 9 N -0.334 5.334 10 C -0.003 4.003 11 C -0.027 4.027 12 N -0.333 5.333 13 C 0.300 3.700 14 O -0.474 6.474 15 C -0.202 4.202 16 C 0.025 3.975 17 F -0.204 7.204 18 C -0.023 4.023 19 C 0.042 3.958 20 H 0.060 0.940 21 H 0.035 0.965 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.149 0.851 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 4.434 -12.577 3.050 13.680 hybrid contribution -0.072 1.318 -0.186 1.333 sum 4.363 -11.259 2.863 12.410 Atomic orbital electron populations 1.70178 1.06911 1.26112 1.55165 1.25857 0.95933 1.01782 1.00979 0.85314 0.77495 0.78990 0.78468 1.19893 1.22455 1.20247 1.19546 0.93225 0.85686 1.40999 0.90632 1.44273 1.36329 1.02909 1.49845 1.21603 0.98594 0.86004 0.94103 1.22528 0.87646 1.01980 0.90511 1.48160 1.33227 1.06329 1.45610 1.20986 0.81927 0.86299 0.80776 1.90657 1.30540 1.87638 1.38574 1.22200 1.03657 0.90146 1.04211 1.21626 0.98638 0.77881 0.99382 1.92752 1.92008 1.46711 1.88926 1.22086 0.99951 0.83504 0.96710 1.20886 0.88178 0.97809 0.88926 0.94048 0.96494 0.90112 0.90478 0.86065 0.86027 0.85086 0.89670 0.90348 0.91624 0.90618 0.91366 0.98959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.72 11.20 21.65 0.24 -54.48 16 2 C -0.05 -2.71 4.91 84.86 0.42 -2.29 16 3 Si 0.97 43.39 29.59 68.60 2.03 45.42 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.26 -13.80 9.57 84.03 0.80 -12.99 16 8 H 0.08 3.74 7.89 -2.91 -0.02 3.72 16 9 N -0.61 -29.09 2.96 -697.35 -2.06 -31.15 16 10 C 0.12 4.47 6.70 86.56 0.58 5.05 16 11 C 0.10 2.65 6.52 86.56 0.56 3.21 16 12 N -0.60 -19.74 2.95 -817.15 -2.41 -22.15 16 13 C 0.51 15.52 7.70 87.66 0.67 16.19 16 14 O -0.59 -22.27 15.39 -3.02 -0.05 -22.32 16 15 C -0.16 -3.23 4.50 29.85 0.13 -3.10 16 16 C 0.08 1.64 6.84 71.98 0.49 2.14 16 17 F -0.22 -4.88 17.36 44.97 0.78 -4.10 16 18 C 0.10 4.00 6.59 86.42 0.57 4.57 16 19 C 0.17 8.12 5.51 86.42 0.48 8.60 16 20 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 21 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 22 H 0.08 2.71 7.93 -2.39 -0.02 2.69 16 23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.12 2.21 5.91 -2.39 -0.01 2.19 16 25 H 0.12 2.07 7.72 -2.39 -0.02 2.06 16 26 H 0.13 1.92 7.91 -2.38 -0.02 1.90 16 27 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 28 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 29 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.08 3.03 7.00 -2.38 -0.02 3.02 16 31 H 0.07 3.70 6.00 -2.39 -0.01 3.68 16 32 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -66.18 267.04 4.36 -61.83 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.11 Total: 5.58 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 4.71 Total: 21.38 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -4.23 Total: -107.78 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.78 Total: -4.10 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.18 4.36 -61.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900776419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.866 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds