Wall clock time and date at job start Mon Mar 30 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.46840 * 2 1 4 4 N 1.32038 * 125.94636 * 275.20225 * 3 2 1 5 5 C 1.33392 * 110.02697 * 180.26795 * 4 3 2 6 6 C 1.40365 * 131.73994 * 180.02562 * 5 4 3 7 7 C 1.36574 * 119.44107 * 179.97438 * 6 5 4 8 8 C 1.40147 * 119.69701 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.93351 * 180.02562 * 8 7 6 10 10 C 1.35339 * 120.12891 * 0.02562 * 8 7 6 11 11 N 1.36243 * 120.57943 * 359.96707 * 10 8 7 12 12 C 1.38478 * 132.44897 * 180.02562 * 11 10 8 13 13 C 1.39815 * 126.89448 * 0.04429 * 12 11 10 14 14 H 1.08003 * 119.99929 * 214.31153 * 13 12 11 15 15 C 1.39878 * 120.00406 * 34.30565 * 13 12 11 16 16 N 1.31031 * 119.99298 * 18.90291 * 15 13 12 17 17 Si 1.86797 * 120.00199 * 198.89948 * 15 13 12 18 18 H 1.48498 * 109.47135 * 60.00637 * 17 15 13 19 19 H 1.48503 * 109.47041 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47327 * 300.00011 * 17 15 13 21 21 H 1.09007 * 109.46793 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47667 * 299.99774 * 1 2 3 23 23 H 1.08995 * 109.47195 * 60.00324 * 1 2 3 24 24 H 1.08998 * 109.47178 * 239.99646 * 2 1 3 25 25 H 1.09003 * 109.46877 * 119.99765 * 2 1 3 26 26 H 1.07999 * 120.27644 * 0.02562 * 6 5 4 27 27 H 1.08000 * 120.14574 * 179.97438 * 7 6 5 28 28 H 1.08994 * 109.47398 * 89.99476 * 9 8 7 29 29 H 1.09002 * 109.46910 * 210.00125 * 9 8 7 30 30 H 1.09005 * 109.47323 * 329.99271 * 9 8 7 31 31 H 1.08001 * 119.70937 * 180.02562 * 10 8 7 32 32 H 0.97007 * 119.99481 * 174.74899 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.1992 2.1839 -1.0645 5 6 2.6635 3.3803 -0.7007 6 6 2.9964 4.5204 -1.4487 7 6 3.4582 5.6336 -0.8061 8 6 3.5943 5.6238 0.5887 9 6 4.1029 6.8493 1.3032 10 6 3.2700 4.5160 1.2952 11 7 2.8083 3.4010 0.6626 12 6 2.4113 2.1589 1.1286 13 6 2.3901 1.7290 2.4589 14 1 2.6082 0.6983 2.6968 15 6 2.0866 2.6337 3.4816 16 7 1.4721 3.7566 3.2018 17 14 2.5573 2.2409 5.2461 18 1 4.0299 2.0741 5.3402 19 1 2.1270 3.3522 6.1323 20 1 1.8887 0.9841 5.6688 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.8874 4.5177 -2.5232 27 1 3.7181 6.5170 -1.3705 28 1 3.2619 7.4885 1.5719 29 1 4.6342 6.5490 2.2064 30 1 4.7807 7.3968 0.6482 31 1 3.3771 4.5160 2.3698 32 1 1.1937 4.3486 3.9181 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067802.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:12 Heat of formation + Delta-G solvation = 55.175125 kcal Electronic energy + Delta-G solvation = -15907.780758 eV Core-core repulsion = 13447.342560 eV Total energy + Delta-G solvation = -2460.438198 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.95786 -36.59867 -34.00775 -32.88851 -31.57549 -30.39147 -28.54074 -25.64051 -24.90681 -23.01043 -21.35679 -20.78693 -18.79180 -17.61302 -15.72031 -15.38721 -15.08654 -14.33165 -14.10128 -13.66035 -13.13783 -13.01644 -12.73347 -12.71256 -11.98317 -11.67663 -11.50002 -11.38412 -11.26619 -10.99133 -10.71759 -10.51431 -10.31087 -10.08474 -9.92396 -9.66078 -9.18396 -8.61668 -7.25878 -6.97465 -6.51801 -4.34238 2.02688 2.53999 2.98296 2.99684 3.03374 3.83318 4.01115 4.27136 4.81382 4.92621 5.45731 5.63638 5.67356 5.95293 6.00595 6.04768 6.09749 6.21064 6.29764 6.35919 6.40405 6.61223 6.70084 6.85279 7.03813 7.04860 7.08675 7.11763 7.29987 7.34199 7.64694 7.90187 8.24847 8.43958 8.64306 8.89510 9.48388 10.08859 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.014539 C = 0.008385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.873085 B = 1925.384206 C = 3338.347372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.011 4.011 3 C -0.062 4.062 4 N -0.477 5.477 5 C 0.119 3.881 6 C -0.071 4.071 7 C -0.144 4.144 8 C -0.177 4.177 9 C -0.085 4.085 10 C 0.131 3.869 11 N -0.373 5.373 12 C 0.182 3.818 13 C -0.453 4.453 14 H 0.097 0.903 15 C 0.069 3.931 16 N -0.815 5.815 17 Si 0.910 3.090 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.263 1.263 21 H 0.041 0.959 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.148 0.852 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 2.016 0.346 3.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.049 4.049 3 C -0.196 4.196 4 N -0.196 5.196 5 C -0.117 4.117 6 C -0.091 4.091 7 C -0.167 4.167 8 C -0.181 4.181 9 C -0.142 4.142 10 C 0.008 3.992 11 N -0.050 5.050 12 C 0.070 3.930 13 C -0.488 4.488 14 H 0.114 0.886 15 C -0.147 4.147 16 N -0.443 5.443 17 Si 0.735 3.265 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.188 1.188 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.141 0.859 27 H 0.133 0.867 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.165 0.835 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.253 1.970 -0.389 3.018 hybrid contribution 0.117 0.376 1.742 1.786 sum 2.370 2.346 1.353 3.599 Atomic orbital electron populations 1.21666 0.96370 0.99631 1.01879 1.19394 0.94573 0.90410 1.00561 1.20885 1.12725 0.97699 0.88334 1.69633 1.18123 1.00641 1.31238 1.20046 1.14110 0.95993 0.81600 1.19808 1.00438 0.90356 0.98528 1.20407 1.04998 0.97835 0.93471 1.19049 1.09336 0.95675 0.94031 1.20398 0.99915 0.94760 0.99147 1.21360 0.94687 0.85042 0.98079 1.42644 1.43444 1.11308 1.07613 1.18586 0.98229 0.81506 0.94643 1.18373 1.44981 0.97461 0.88004 0.88559 1.25886 0.93111 0.94053 1.01675 1.69871 1.28325 1.10515 1.35602 0.86300 0.80171 0.79191 0.80845 1.18855 1.20350 1.18754 0.93963 0.92576 0.93433 0.92833 0.91607 0.85872 0.86709 0.92341 0.92605 0.92370 0.83466 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.89 37.16 0.37 -2.29 16 2 C -0.01 -0.23 6.34 -27.89 -0.18 -0.41 16 3 C -0.06 -1.59 6.46 -81.81 -0.53 -2.12 16 4 N -0.48 -12.61 11.23 -8.10 -0.09 -12.70 16 5 C 0.12 3.05 7.77 -155.50 -1.21 1.84 16 6 C -0.07 -1.54 10.10 -39.38 -0.40 -1.94 16 7 C -0.14 -2.81 9.75 -39.47 -0.38 -3.19 16 8 C -0.18 -3.58 5.85 -104.94 -0.61 -4.19 16 9 C -0.08 -1.32 10.00 36.00 0.36 -0.96 16 10 C 0.13 3.10 8.90 -16.63 -0.15 2.96 16 11 N -0.37 -9.78 2.90 -60.03 -0.17 -9.95 16 12 C 0.18 4.89 6.24 -83.58 -0.52 4.37 16 13 C -0.45 -11.57 8.86 -38.38 -0.34 -11.91 16 14 H 0.10 2.33 7.57 -52.48 -0.40 1.93 16 15 C 0.07 1.65 4.54 -17.28 -0.08 1.57 16 16 N -0.81 -20.43 10.60 55.55 0.59 -19.84 16 17 Si 0.91 18.01 29.61 -169.99 -5.03 12.98 16 18 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 19 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.32 7.57 -51.93 -0.39 0.93 16 26 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 27 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.15 3.49 6.07 -52.49 -0.32 3.17 16 32 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 272.88 15.07 4.11 4.11 Total: -1.00 -28.99 272.88 -8.31 -37.30 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.04 Total: 4.36 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -3.67 Total: -16.27 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.32 Total: -42.49 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.99 -8.31 -37.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067802.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.475 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds