Wall clock time and date at job start Mon Mar 30 2020 03:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.46840 * 2 1 4 4 N 1.32038 * 125.94636 * 275.20225 * 3 2 1 5 5 C 1.33392 * 110.02697 * 180.26795 * 4 3 2 6 6 C 1.40365 * 131.73994 * 180.02562 * 5 4 3 7 7 C 1.36574 * 119.44107 * 179.97438 * 6 5 4 8 8 C 1.40147 * 119.69701 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.93351 * 180.02562 * 8 7 6 10 10 C 1.35339 * 120.12891 * 0.02562 * 8 7 6 11 11 N 1.36243 * 120.57943 * 359.96707 * 10 8 7 12 12 C 1.38478 * 132.44897 * 180.02562 * 11 10 8 13 13 C 1.39815 * 126.89448 * 0.04429 * 12 11 10 14 14 H 1.08003 * 119.99929 * 214.31153 * 13 12 11 15 15 C 1.39878 * 120.00406 * 34.30565 * 13 12 11 16 16 N 1.31031 * 119.99298 * 18.90291 * 15 13 12 17 17 Si 1.86797 * 120.00199 * 198.89948 * 15 13 12 18 18 H 1.48498 * 109.47135 * 60.00637 * 17 15 13 19 19 H 1.48503 * 109.47041 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47327 * 300.00011 * 17 15 13 21 21 H 1.09007 * 109.46793 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47667 * 299.99774 * 1 2 3 23 23 H 1.08995 * 109.47195 * 60.00324 * 1 2 3 24 24 H 1.08998 * 109.47178 * 239.99646 * 2 1 3 25 25 H 1.09003 * 109.46877 * 119.99765 * 2 1 3 26 26 H 1.07999 * 120.27644 * 0.02562 * 6 5 4 27 27 H 1.08000 * 120.14574 * 179.97438 * 7 6 5 28 28 H 1.08994 * 109.47398 * 89.99476 * 9 8 7 29 29 H 1.09002 * 109.46910 * 210.00125 * 9 8 7 30 30 H 1.09005 * 109.47323 * 329.99271 * 9 8 7 31 31 H 1.08001 * 119.70937 * 180.02562 * 10 8 7 32 32 H 0.97007 * 119.99481 * 174.74899 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.1992 2.1839 -1.0645 5 6 2.6635 3.3803 -0.7007 6 6 2.9964 4.5204 -1.4487 7 6 3.4582 5.6336 -0.8061 8 6 3.5943 5.6238 0.5887 9 6 4.1029 6.8493 1.3032 10 6 3.2700 4.5160 1.2952 11 7 2.8083 3.4010 0.6626 12 6 2.4113 2.1589 1.1286 13 6 2.3901 1.7290 2.4589 14 1 2.6082 0.6983 2.6968 15 6 2.0866 2.6337 3.4816 16 7 1.4721 3.7566 3.2018 17 14 2.5573 2.2409 5.2461 18 1 4.0299 2.0741 5.3402 19 1 2.1270 3.3522 6.1323 20 1 1.8887 0.9841 5.6688 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.8874 4.5177 -2.5232 27 1 3.7181 6.5170 -1.3705 28 1 3.2619 7.4885 1.5719 29 1 4.6342 6.5490 2.2064 30 1 4.7807 7.3968 0.6482 31 1 3.3771 4.5160 2.3698 32 1 1.1937 4.3486 3.9181 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067802.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:12 Heat of formation + Delta-G solvation = 40.000894 kcal Electronic energy + Delta-G solvation = -15908.438762 eV Core-core repulsion = 13447.342560 eV Total energy + Delta-G solvation = -2461.096202 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.78693 -38.30224 -35.83166 -34.55676 -33.35431 -31.97415 -30.36355 -27.20629 -26.72811 -24.65434 -23.12631 -22.52891 -20.60593 -19.43954 -17.50607 -17.13649 -16.80150 -16.14863 -15.70629 -15.37973 -14.81689 -14.59029 -14.39431 -14.12709 -13.50413 -13.26736 -13.10285 -13.06571 -12.84185 -12.65506 -12.26884 -12.15022 -11.95017 -11.75569 -11.63247 -11.42756 -10.94698 -10.52386 -9.05868 -8.78406 -8.34576 -6.23325 0.28853 0.80891 1.37019 1.41244 1.48787 2.15992 2.23632 2.47655 3.01119 3.06838 3.78063 4.02536 4.17732 4.35420 4.41681 4.46310 4.70115 4.72753 4.77004 4.89638 4.91602 5.00111 5.14562 5.21255 5.26469 5.36781 5.43729 5.47773 5.59729 5.64697 5.84304 6.13096 6.38042 6.59140 6.79277 7.05223 7.58698 8.31383 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.014539 C = 0.008385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.873085 B = 1925.384206 C = 3338.347372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.011 4.011 3 C -0.083 4.083 4 N -0.508 5.508 5 C 0.097 3.903 6 C -0.094 4.094 7 C -0.122 4.122 8 C -0.161 4.161 9 C -0.083 4.083 10 C 0.088 3.912 11 N -0.381 5.381 12 C 0.139 3.861 13 C -0.481 4.481 14 H 0.097 0.903 15 C 0.034 3.966 16 N -0.845 5.845 17 Si 0.982 3.018 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.257 1.257 21 H 0.081 0.919 22 H 0.033 0.967 23 H 0.036 0.964 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.165 0.835 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 3.475 0.576 4.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.049 4.049 3 C -0.217 4.217 4 N -0.228 5.228 5 C -0.140 4.140 6 C -0.114 4.114 7 C -0.145 4.145 8 C -0.165 4.165 9 C -0.140 4.140 10 C -0.035 4.035 11 N -0.058 5.058 12 C 0.027 3.973 13 C -0.516 4.516 14 H 0.115 0.885 15 C -0.179 4.179 16 N -0.474 5.474 17 Si 0.803 3.197 18 H -0.186 1.186 19 H -0.195 1.195 20 H -0.182 1.182 21 H 0.100 0.900 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.166 0.834 27 H 0.183 0.817 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.156 0.844 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.011 3.430 -0.160 4.567 hybrid contribution -0.065 0.088 1.554 1.558 sum 2.946 3.518 1.394 4.795 Atomic orbital electron populations 1.21556 0.95009 1.01629 1.00183 1.19507 0.95694 0.88429 1.01307 1.21587 1.12654 0.99312 0.88131 1.69622 1.19985 1.01491 1.31740 1.20877 1.13892 0.97022 0.82159 1.20264 1.01330 0.89932 0.99841 1.21009 1.01731 0.98458 0.93315 1.19761 1.06085 0.95888 0.94802 1.20523 1.00970 0.92842 0.99699 1.21620 0.97611 0.85977 0.98280 1.42828 1.43226 1.11757 1.07943 1.19045 1.00038 0.82557 0.95644 1.18577 1.46521 0.98065 0.88474 0.88511 1.26660 0.92216 0.93559 1.05478 1.69942 1.29058 1.11445 1.36971 0.85225 0.79701 0.79223 0.75552 1.18606 1.19453 1.18154 0.90027 0.94810 0.94444 0.91643 0.91077 0.83428 0.81721 0.91092 0.92045 0.88997 0.84449 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.89 71.98 0.71 -4.20 16 2 C -0.01 -0.47 6.34 29.85 0.19 -0.28 16 3 C -0.08 -4.44 6.46 42.97 0.28 -4.16 16 4 N -0.51 -27.68 11.23 -179.55 -2.02 -29.70 16 5 C 0.10 5.10 7.77 133.70 1.04 6.14 16 6 C -0.09 -3.94 10.10 22.40 0.23 -3.71 16 7 C -0.12 -4.36 9.75 22.34 0.22 -4.14 16 8 C -0.16 -6.18 5.85 -20.07 -0.12 -6.30 16 9 C -0.08 -2.28 10.00 71.23 0.71 -1.57 16 10 C 0.09 4.16 8.90 83.34 0.74 4.91 16 11 N -0.38 -20.51 2.90 -343.84 -1.00 -21.51 16 12 C 0.14 7.79 6.24 38.92 0.24 8.03 16 13 C -0.48 -25.52 8.86 23.05 0.20 -25.32 16 14 H 0.10 4.88 7.57 -2.91 -0.02 4.86 16 15 C 0.03 1.65 4.54 85.21 0.39 2.04 16 16 N -0.84 -43.33 10.60 21.83 0.23 -43.10 16 17 Si 0.98 37.21 29.61 68.60 2.03 39.24 16 18 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 19 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 21 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.07 2.93 7.57 -2.39 -0.02 2.91 16 26 H 0.15 5.33 8.06 -2.91 -0.02 5.31 16 27 H 0.17 4.25 8.06 -2.91 -0.02 4.22 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 30 H 0.09 1.94 8.09 -2.38 -0.02 1.92 16 31 H 0.14 6.66 6.07 -2.91 -0.02 6.65 16 32 H 0.29 13.51 8.31 -92.70 -0.77 12.74 16 Total: -1.00 -65.63 272.88 5.19 -60.44 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 1.11 Total: 23.20 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 4.83 Total: -28.57 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -2.78 Total: -94.31 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -65.63 5.19 -60.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067802.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.443 kcal (2) G-P(sol) polarization free energy of solvation -65.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds