Wall clock time and date at job start Mon Mar 30 2020 03:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47135 * 2 1 4 4 N 1.32041 * 125.94515 * 274.87608 * 3 2 1 5 5 C 1.33389 * 110.02611 * 179.80885 * 4 3 2 6 6 C 1.40360 * 131.73947 * 179.61783 * 5 4 3 7 7 C 1.50701 * 120.27972 * 0.62261 * 6 5 4 8 8 C 1.36570 * 119.44240 * 180.34636 * 6 5 4 9 9 C 1.40150 * 119.69712 * 0.25360 * 8 6 5 10 10 C 1.35337 * 120.12971 * 359.97438 * 9 8 6 11 11 N 1.36244 * 120.57596 * 0.02562 * 10 9 8 12 12 C 1.38472 * 132.44760 * 179.97438 * 11 10 9 13 13 C 1.39826 * 126.89534 * 359.97438 * 12 11 10 14 14 H 1.08001 * 119.99901 * 213.54049 * 13 12 11 15 15 C 1.39875 * 119.99718 * 33.54617 * 13 12 11 16 16 N 1.31020 * 120.00558 * 19.71319 * 15 13 12 17 17 Si 1.86806 * 119.99308 * 199.71750 * 15 13 12 18 18 H 1.48504 * 109.46820 * 90.00071 * 17 15 13 19 19 H 1.48505 * 109.46711 * 209.99419 * 17 15 13 20 20 H 1.48501 * 109.47330 * 329.99795 * 17 15 13 21 21 H 1.09003 * 109.47414 * 299.99702 * 1 2 3 22 22 H 1.08996 * 109.47807 * 60.00097 * 1 2 3 23 23 H 1.09007 * 109.47220 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46700 * 239.99833 * 2 1 3 25 25 H 1.08999 * 109.46917 * 120.00044 * 2 1 3 26 26 H 1.09002 * 109.47324 * 269.72669 * 7 6 5 27 27 H 1.08999 * 109.47255 * 149.72180 * 7 6 5 28 28 H 1.09002 * 109.46768 * 29.71744 * 7 6 5 29 29 H 1.07998 * 120.15056 * 180.27281 * 8 6 5 30 30 H 1.07999 * 119.92993 * 179.97438 * 9 8 6 31 31 H 1.08000 * 119.71444 * 180.02562 * 10 9 8 32 32 H 0.96996 * 120.00140 * 174.91691 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2050 2.1819 -1.0651 5 6 2.6580 3.3823 -0.7002 6 6 2.9980 4.5198 -1.4488 7 6 2.8579 4.5119 -2.9493 8 6 3.4516 5.6359 -0.8055 9 6 3.5768 5.6300 0.5904 10 6 3.2491 4.5234 1.2972 11 7 2.7958 3.4055 0.6639 12 6 2.3987 2.1635 1.1298 13 6 2.3695 1.7363 2.4609 14 1 2.5763 0.7039 2.7014 15 6 2.0723 2.6461 3.4809 16 7 1.4557 3.7674 3.1996 17 14 2.5545 2.2622 5.2444 18 1 3.9171 2.7892 5.5107 19 1 1.5867 2.9008 6.1723 20 1 2.5430 0.7918 5.4519 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.7893 4.1686 -3.3994 27 1 2.6354 5.5201 -3.2987 28 1 2.0475 3.8412 -3.2349 29 1 3.7123 6.5190 -1.3698 30 1 3.9355 6.5103 1.1030 31 1 3.3478 4.5264 2.3727 32 1 1.1839 4.3640 3.9145 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:16 Heat of formation + Delta-G solvation = 55.525655 kcal Electronic energy + Delta-G solvation = -15939.360458 eV Core-core repulsion = 13478.937460 eV Total energy + Delta-G solvation = -2460.422998 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.96454 -36.34801 -34.17881 -32.88523 -32.17173 -29.49952 -28.46191 -26.00779 -24.92543 -23.06089 -21.34620 -20.55383 -18.80971 -17.48827 -15.81442 -15.35946 -15.10049 -14.44150 -14.25112 -13.43693 -13.13800 -12.93972 -12.72279 -12.53659 -11.90092 -11.66937 -11.54321 -11.39135 -11.24720 -10.84728 -10.71972 -10.50675 -10.30918 -10.18913 -10.07217 -9.45678 -9.11515 -8.60144 -7.31079 -6.98022 -6.49838 -4.33669 2.00980 2.56918 2.98799 3.00818 3.03928 3.83484 4.02325 4.28750 4.80090 4.93314 5.45434 5.69169 5.76430 5.96824 6.01754 6.07098 6.20631 6.28719 6.34358 6.36253 6.49160 6.61512 6.70474 6.86161 7.02323 7.08595 7.10281 7.16905 7.23508 7.41580 7.65630 7.90912 8.25727 8.44933 8.64217 8.90111 9.49094 10.08065 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021913 B = 0.012157 C = 0.008290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.493513 B = 2302.603306 C = 3376.603295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.010 4.010 3 C -0.064 4.064 4 N -0.473 5.473 5 C 0.125 3.875 6 C -0.043 4.043 7 C -0.093 4.093 8 C -0.154 4.154 9 C -0.201 4.201 10 C 0.125 3.875 11 N -0.374 5.374 12 C 0.182 3.818 13 C -0.452 4.452 14 H 0.097 0.903 15 C 0.068 3.932 16 N -0.814 5.814 17 Si 0.911 3.089 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.260 1.260 21 H 0.055 0.945 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 1.003 -1.398 2.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.049 4.049 3 C -0.198 4.198 4 N -0.193 5.193 5 C -0.112 4.112 6 C -0.045 4.045 7 C -0.150 4.150 8 C -0.177 4.177 9 C -0.223 4.223 10 C 0.002 3.998 11 N -0.051 5.051 12 C 0.070 3.930 13 C -0.487 4.487 14 H 0.115 0.885 15 C -0.148 4.148 16 N -0.442 5.442 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.184 1.184 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.742 0.951 -2.129 2.910 hybrid contribution 0.192 0.482 1.908 1.977 sum 1.934 1.433 -0.221 2.417 Atomic orbital electron populations 1.21667 0.96388 0.99609 1.01870 1.19385 0.94539 0.90437 1.00530 1.20866 1.13010 0.97691 0.88264 1.69601 1.18115 1.00410 1.31148 1.19804 1.14350 0.95651 0.81371 1.18622 0.99963 0.90856 0.95077 1.20486 1.02059 1.01281 0.91172 1.20382 1.05711 0.97553 0.94043 1.20317 1.09919 0.97752 0.94348 1.21531 0.94571 0.85324 0.98358 1.42632 1.43726 1.11239 1.07531 1.18597 0.98235 0.81501 0.94652 1.18417 1.45012 0.97273 0.88012 0.88486 1.25890 0.93090 0.94086 1.01708 1.69879 1.28310 1.10459 1.35596 0.86242 0.79180 0.80108 0.80902 1.19381 1.20313 1.18398 0.92578 0.93450 0.93989 0.92851 0.91658 0.92033 0.92506 0.91287 0.86793 0.85928 0.83475 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.89 37.16 0.37 -2.28 16 2 C -0.01 -0.22 6.34 -27.88 -0.18 -0.39 16 3 C -0.06 -1.63 6.46 -81.81 -0.53 -2.16 16 4 N -0.47 -12.34 11.18 -8.10 -0.09 -12.43 16 5 C 0.12 3.19 7.48 -155.51 -1.16 2.02 16 6 C -0.04 -0.93 5.90 -104.43 -0.62 -1.54 16 7 C -0.09 -1.63 10.01 36.01 0.36 -1.27 16 8 C -0.15 -3.04 9.73 -39.47 -0.38 -3.42 16 9 C -0.20 -4.11 10.00 -39.90 -0.40 -4.51 16 10 C 0.13 2.96 9.28 -16.63 -0.15 2.81 16 11 N -0.37 -9.79 2.90 -60.03 -0.17 -9.97 16 12 C 0.18 4.87 6.26 -83.58 -0.52 4.35 16 13 C -0.45 -11.53 8.86 -38.38 -0.34 -11.87 16 14 H 0.10 2.35 7.57 -52.49 -0.40 1.96 16 15 C 0.07 1.64 4.52 -17.29 -0.08 1.56 16 16 N -0.81 -20.43 10.58 55.55 0.59 -19.84 16 17 Si 0.91 18.05 29.61 -169.99 -5.03 13.02 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.06 1.31 7.57 -51.93 -0.39 0.91 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.07 1.27 8.07 -51.93 -0.42 0.86 16 29 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.15 3.47 6.02 -52.49 -0.32 3.16 16 32 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -28.88 272.76 -8.27 -37.15 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.04 Total: 4.66 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -3.63 Total: -16.70 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.32 Total: -42.24 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.88 -8.27 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.674 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds