Wall clock time and date at job start Mon Mar 30 2020 03:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 N 1.46504 * 114.20469 * 272.48100 * 11 10 9 13 13 C 1.34778 * 120.00064 * 248.60073 * 12 11 10 14 14 O 1.21284 * 119.99454 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00090 * 179.97438 * 13 12 11 16 16 C 1.53010 * 109.47101 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47082 * 180.02562 * 16 15 13 18 18 F 1.39900 * 109.46873 * 180.02562 * 17 16 15 19 19 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 20 20 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 21 21 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 22 22 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 23 23 H 1.08994 * 114.39005 * 139.66791 * 11 10 9 24 24 H 0.96994 * 120.00395 * 68.59405 * 12 11 10 25 25 H 1.09003 * 109.47292 * 299.99401 * 15 13 12 26 26 H 1.09000 * 109.47193 * 59.99888 * 15 13 12 27 27 H 1.09003 * 109.46842 * 300.00024 * 16 15 13 28 28 H 1.09000 * 109.46906 * 60.00059 * 16 15 13 29 29 H 1.09003 * 109.47290 * 299.99736 * 17 16 15 30 30 H 1.08994 * 109.47341 * 59.99786 * 17 16 15 31 31 H 1.09005 * 113.46156 * 321.64040 * 19 9 7 32 32 H 1.08994 * 113.46837 * 92.01680 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 7 0.3876 -3.9999 -2.1538 13 6 -0.5060 -4.6763 -2.9024 14 8 -1.3503 -5.3623 -2.3662 15 6 -0.4561 -4.5802 -4.4054 16 6 -1.5709 -5.4373 -5.0086 17 6 -1.5198 -5.3402 -6.5346 18 9 -2.5394 -6.1234 -7.0861 19 6 1.6797 -3.8155 0.0005 20 1 -0.4849 0.8401 -0.0004 21 1 -0.4897 -2.9528 1.0077 22 1 -0.7251 -2.1596 -0.6083 23 1 -0.1731 -4.9861 -0.3346 24 1 1.0631 -3.4515 -2.5826 25 1 -0.5917 -3.5418 -4.7078 26 1 0.5100 -4.9389 -4.7605 27 1 -1.4348 -6.4757 -4.7062 28 1 -2.5371 -5.0790 -4.6535 29 1 -1.6556 -4.3019 -6.8374 30 1 -0.5535 -5.6987 -6.8894 31 1 2.5452 -4.0479 -0.6200 32 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268436609.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:26 Heat of formation + Delta-G solvation = -43.055302 kcal Electronic energy + Delta-G solvation = -15827.305777 eV Core-core repulsion = 12931.838763 eV Total energy + Delta-G solvation = -2895.467014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.69363 -39.61085 -37.76225 -33.95028 -33.26457 -31.86348 -28.07351 -26.91051 -24.64330 -23.37228 -22.10508 -20.14320 -19.30244 -17.03117 -16.72813 -16.57964 -15.90395 -15.20736 -15.09787 -14.83936 -14.68686 -13.81774 -13.59283 -13.22909 -12.80030 -12.59741 -11.92394 -11.72454 -11.44906 -11.28879 -11.12820 -10.91862 -10.74236 -10.65506 -10.21585 -9.95564 -9.55675 -9.44971 -8.90265 -8.35192 -6.96444 -5.82486 -3.16644 2.96807 3.33661 3.39123 3.41501 3.52640 4.39583 4.59921 4.65440 4.69165 4.90837 5.15025 5.19105 5.27791 5.42759 5.49116 5.51930 5.65039 5.91023 6.12570 6.16212 6.20935 6.36967 6.48952 6.80129 7.16561 7.28677 7.53864 7.90388 8.02387 8.63333 8.96880 9.63777 10.56662 11.34221 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.034070 B = 0.005342 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.646854 B = 5239.811110 C = 5711.002930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.081 0.919 9 N -0.609 5.609 10 C 0.141 3.859 11 C 0.084 3.916 12 N -0.690 5.690 13 C 0.512 3.488 14 O -0.553 6.553 15 C -0.139 4.139 16 C -0.137 4.137 17 C 0.061 3.939 18 F -0.220 7.220 19 C 0.109 3.891 20 H 0.254 0.746 21 H 0.034 0.966 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.405 0.595 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -8.592 -10.024 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.099 0.901 9 N -0.336 5.336 10 C 0.014 3.986 11 C -0.023 4.023 12 N -0.339 5.339 13 C 0.298 3.702 14 O -0.432 6.432 15 C -0.179 4.179 16 C -0.175 4.175 17 C 0.006 3.994 18 F -0.202 7.202 19 C -0.018 4.018 20 H 0.064 0.936 21 H 0.052 0.948 22 H 0.093 0.907 23 H 0.114 0.886 24 H 0.240 0.760 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.150 -8.715 -9.637 12.994 hybrid contribution 0.802 1.332 0.065 1.556 sum 0.953 -7.383 -9.573 12.126 Atomic orbital electron populations 1.69843 1.05051 1.25431 1.56057 1.24808 0.95638 0.97537 1.02284 0.86123 0.78597 0.83409 0.77611 1.21507 1.21616 1.20661 1.18928 0.90101 0.81472 1.44494 0.90124 1.45737 1.02613 0.99165 1.86078 1.22558 0.89031 0.90217 0.96783 1.22588 0.99599 1.00174 0.79918 1.45475 1.33575 1.48245 1.06617 1.20442 0.81119 0.79387 0.89231 1.90673 1.36776 1.41358 1.74367 1.21529 1.00772 1.02677 0.92957 1.21888 1.00279 1.02070 0.93260 1.22028 0.88791 0.94890 0.93689 1.92760 1.62958 1.77408 1.87042 1.22768 0.94764 0.87137 0.97171 0.93580 0.94848 0.90666 0.88637 0.76047 0.88474 0.88808 0.90078 0.89909 0.90684 0.90807 0.93887 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 11.51 55.49 0.64 -26.22 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.22 -6.03 10.75 -15.06 -0.16 -6.19 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -15.04 3.78 -184.80 -0.70 -15.74 16 10 C 0.14 3.32 7.21 -8.51 -0.06 3.26 16 11 C 0.08 1.60 4.61 -67.82 -0.31 1.28 16 12 N -0.69 -11.65 5.39 -53.63 -0.29 -11.94 16 13 C 0.51 8.18 7.83 -10.99 -0.09 8.10 16 14 O -0.55 -10.79 15.57 5.55 0.09 -10.70 16 15 C -0.14 -1.52 5.70 -27.88 -0.16 -1.68 16 16 C -0.14 -1.51 4.96 -26.73 -0.13 -1.64 16 17 C 0.06 0.54 7.55 37.16 0.28 0.83 16 18 F -0.22 -2.63 17.36 2.25 0.04 -2.59 16 19 C 0.11 2.13 8.45 -8.52 -0.07 2.06 16 20 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 21 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.08 1.99 7.12 -51.93 -0.37 1.62 16 23 H 0.10 1.78 7.45 -51.93 -0.39 1.39 16 24 H 0.40 6.44 8.76 -40.82 -0.36 6.09 16 25 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 28 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 279.70 15.07 4.22 4.22 Total: -1.00 -32.23 279.70 -6.29 -38.52 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.46 Total: 2.17 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -0.80 Total: 5.76 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.35 Total: -53.89 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.23 -6.29 -38.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268436609.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.536 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds