Wall clock time and date at job start Mon Mar 30 2020 03:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00273 * 2 1 4 4 C 1.39904 * 120.00044 * 179.97438 * 2 1 3 5 5 C 1.39254 * 119.95228 * 5.72300 * 4 2 1 6 6 C 1.37786 * 120.54966 * 179.97438 * 5 4 2 7 7 C 1.39143 * 120.07737 * 0.04537 * 6 5 4 8 8 N 1.38335 * 132.70359 * 179.97438 * 7 6 5 9 9 H 0.96998 * 124.70229 * 0.03121 * 8 7 6 10 10 C 1.35585 * 110.59869 * 180.02562 * 8 7 6 11 11 C 1.38905 * 109.29981 * 359.97438 * 10 8 7 12 12 C 1.40884 * 126.92030 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99868 * 179.97438 * 12 11 10 14 14 C 1.39734 * 119.99989 * 359.97438 * 12 11 10 15 15 N 1.31061 * 120.00010 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99992 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.47090 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47057 * 119.99375 * 16 14 12 19 19 H 1.48501 * 109.47318 * 240.00075 * 16 14 12 20 20 C 1.40318 * 119.42566 * 359.97438 * 7 6 5 21 21 C 1.38525 * 119.95872 * 185.45737 * 4 2 1 22 22 H 1.08998 * 109.46987 * 174.94607 * 1 2 3 23 23 H 1.09006 * 109.47077 * 54.94852 * 1 2 3 24 24 H 1.09002 * 109.47310 * 294.94634 * 1 2 3 25 25 H 1.08995 * 109.47055 * 89.99628 * 3 2 1 26 26 H 1.09004 * 109.46739 * 210.00317 * 3 2 1 27 27 H 1.08998 * 109.46813 * 329.99473 * 3 2 1 28 28 H 1.07999 * 119.72685 * 0.02562 * 5 4 2 29 29 H 1.08002 * 119.96132 * 180.02562 * 6 5 4 30 30 H 1.08000 * 125.35327 * 179.97438 * 10 8 7 31 31 H 0.96997 * 119.99584 * 180.02562 * 15 14 12 32 32 H 1.08001 * 120.17778 * 359.97079 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1645 -1.2116 0.0005 5 6 1.4724 -2.4140 -0.1192 6 6 2.1490 -3.6144 -0.1207 7 6 3.5351 -3.6337 -0.0009 8 7 4.4600 -4.6619 0.0284 9 1 4.2403 -5.6044 -0.0381 10 6 5.7163 -4.1699 0.1629 11 6 5.6618 -2.7834 0.2271 12 6 6.7498 -1.8992 0.3658 13 1 6.5783 -0.8336 0.4034 14 6 8.0509 -2.4010 0.4548 15 7 8.2590 -3.6942 0.4097 16 14 9.4936 -1.2287 0.6380 17 1 8.9950 0.1700 0.6623 18 1 10.2110 -1.5209 1.9049 19 1 10.4218 -1.4029 -0.5081 20 6 4.2335 -2.4227 0.1203 21 6 3.5450 -1.2133 0.1147 22 1 -0.3633 -1.0237 -0.0905 23 1 -0.3633 0.5902 -0.8413 24 1 -0.3634 0.4334 0.9318 25 1 2.3791 1.5834 1.0276 26 1 3.1499 1.1383 -0.5139 27 1 1.6085 2.0283 -0.5139 28 1 0.3965 -2.4057 -0.2126 29 1 1.6027 -4.5413 -0.2145 30 1 6.6176 -4.7627 0.2124 31 1 9.1622 -4.0425 0.4718 32 1 4.0836 -0.2813 0.2029 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002029791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:54 Heat of formation + Delta-G solvation = 47.092606 kcal Electronic energy + Delta-G solvation = -15384.248945 eV Core-core repulsion = 12923.460263 eV Total energy + Delta-G solvation = -2460.788682 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.32980 -38.85751 -35.75294 -35.07990 -32.46392 -30.18658 -29.48724 -28.46710 -26.61079 -25.09839 -22.76964 -21.61760 -20.87972 -18.91029 -17.74041 -17.31172 -16.78669 -16.18950 -15.77212 -15.66567 -14.63830 -14.60451 -14.34868 -14.15251 -13.51481 -13.24334 -13.20876 -12.93354 -12.81161 -12.67475 -12.50967 -12.30298 -11.95633 -11.64041 -11.26453 -11.15670 -10.14111 -9.77506 -8.44321 -8.34684 -7.67846 -5.88264 0.59189 1.16492 1.40484 1.41619 1.55999 2.33152 2.35318 2.50776 3.01451 3.18257 3.70398 4.10143 4.21531 4.39919 4.60477 4.61800 4.73430 4.79142 4.88865 4.95246 4.99068 5.01359 5.25953 5.32373 5.45253 5.55212 5.64790 5.98229 6.02993 6.15934 6.46917 6.66566 6.86673 6.89346 7.19445 7.29008 7.52393 8.65033 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029307 B = 0.007851 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.179571 B = 3565.727653 C = 4498.847329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.654 5.654 3 C 0.099 3.901 4 C 0.157 3.843 5 C -0.172 4.172 6 C -0.103 4.103 7 C 0.032 3.968 8 N -0.594 5.594 9 H 0.409 0.591 10 C -0.086 4.086 11 C -0.046 4.046 12 C -0.452 4.452 13 H 0.058 0.942 14 C 0.008 3.992 15 N -0.865 5.865 16 Si 0.985 3.015 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.270 1.270 20 C -0.121 4.121 21 C -0.168 4.168 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.141 0.859 30 H 0.180 0.820 31 H 0.277 0.723 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 3.915 -1.003 12.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.371 5.371 3 C -0.045 4.045 4 C 0.057 3.943 5 C -0.194 4.194 6 C -0.125 4.125 7 C -0.077 4.077 8 N -0.200 5.200 9 H 0.245 0.755 10 C -0.211 4.211 11 C -0.052 4.052 12 C -0.485 4.485 13 H 0.076 0.924 14 C -0.197 4.197 15 N -0.497 5.497 16 Si 0.808 3.192 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.128 4.128 21 C -0.192 4.192 22 H 0.100 0.900 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.170 0.830 29 H 0.159 0.841 30 H 0.196 0.804 31 H 0.088 0.912 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.690 3.809 -0.997 12.335 hybrid contribution 1.071 -0.028 0.119 1.077 sum -10.620 3.782 -0.878 11.307 Atomic orbital electron populations 1.21736 0.78295 1.03426 1.01355 1.46260 1.05522 1.02284 1.83005 1.21531 0.96960 0.85267 1.00713 1.17499 0.89991 0.86994 0.99834 1.20551 0.99974 0.89718 1.09121 1.20047 0.89224 0.98922 1.04267 1.18540 0.91718 0.88249 1.09172 1.41271 1.04994 1.06835 1.66898 0.75460 1.23155 0.86365 0.95069 1.16508 1.18528 0.90022 0.92665 1.04027 1.18914 0.91261 0.93429 1.44926 0.92413 1.26436 1.02005 0.97182 0.94102 1.69521 1.22922 1.13902 1.43374 0.85084 0.77156 0.78550 0.78412 1.19001 1.19487 1.19471 1.19500 0.94250 0.93033 1.05994 1.19853 0.92589 0.95982 1.10736 0.90049 0.91669 0.92758 0.94206 0.93374 0.89450 0.82960 0.84142 0.80397 0.91237 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.95 10.63 127.77 1.36 3.31 16 2 N -0.65 -19.74 3.41 -747.09 -2.55 -22.29 16 3 C 0.10 2.65 10.10 127.77 1.29 3.94 16 4 C 0.16 5.97 6.54 38.17 0.25 6.22 16 5 C -0.17 -5.82 9.29 22.41 0.21 -5.61 16 6 C -0.10 -3.77 10.06 22.38 0.23 -3.55 16 7 C 0.03 1.47 7.23 38.84 0.28 1.75 16 8 N -0.59 -27.16 6.00 -184.84 -1.11 -28.26 16 9 H 0.41 15.05 8.96 -92.71 -0.83 14.22 16 10 C -0.09 -4.68 10.88 84.27 0.92 -3.76 16 11 C -0.05 -2.73 6.10 -19.97 -0.12 -2.85 16 12 C -0.45 -26.78 9.42 23.28 0.22 -26.56 16 13 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 14 C 0.01 0.46 5.49 85.17 0.47 0.93 16 15 N -0.86 -47.91 10.33 21.80 0.23 -47.69 16 16 Si 0.99 42.38 29.56 68.60 2.03 44.41 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 C -0.12 -6.35 6.32 -20.05 -0.13 -6.48 16 21 C -0.17 -7.83 9.20 22.56 0.21 -7.62 16 22 H 0.08 1.55 5.30 -2.39 -0.01 1.54 16 23 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 1.47 6.44 -2.39 -0.02 1.46 16 27 H 0.09 1.75 8.07 -2.39 -0.02 1.73 16 28 H 0.15 3.86 5.71 -2.91 -0.02 3.84 16 29 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 30 H 0.18 10.05 5.67 -2.91 -0.02 10.03 16 31 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 32 H 0.10 4.63 6.29 -2.91 -0.02 4.61 16 Total: -1.00 -68.43 266.99 4.09 -64.35 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.32 Total: 29.76 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 5.18 Total: -40.27 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -3.43 Total: -98.24 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -68.43 4.09 -64.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002029791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.440 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds