Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47216 * 2 1 4 4 C 1.47203 * 109.47313 * 179.97438 * 3 2 1 5 5 N 3.43548 * 155.17608 * 359.97438 * 2 1 3 6 6 C 1.53000 * 109.47746 * 300.00305 * 3 2 1 7 7 C 1.50697 * 109.46713 * 300.00307 * 6 3 2 8 8 H 1.07997 * 120.00209 * 359.97438 * 7 6 3 9 9 C 1.37878 * 119.99702 * 179.97438 * 7 6 3 10 10 N 1.31511 * 120.00278 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00029 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47108 * 59.99614 * 11 9 7 13 13 H 1.48498 * 109.46924 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46757 * 299.99600 * 11 9 7 15 15 C 1.50702 * 109.47006 * 60.00745 * 3 2 1 16 16 C 1.38653 * 120.79323 * 59.99702 * 15 3 2 17 17 C 1.38199 * 119.16102 * 180.30354 * 16 15 3 18 18 N 1.31872 * 120.76568 * 359.40208 * 17 16 15 19 19 C 1.31868 * 121.72287 * 0.63104 * 18 17 16 20 20 C 1.38203 * 120.76795 * 359.66432 * 19 18 17 21 21 H 1.09004 * 109.47259 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46403 * 299.99676 * 1 2 3 23 23 H 1.08997 * 109.47093 * 59.99515 * 1 2 3 24 24 H 1.09005 * 109.46403 * 240.00324 * 2 1 3 25 25 H 1.08997 * 109.47093 * 120.00485 * 2 1 3 26 26 H 1.08998 * 109.46695 * 59.99558 * 6 3 2 27 27 H 1.08990 * 109.47500 * 180.02562 * 6 3 2 28 28 H 0.97003 * 120.00516 * 179.97438 * 10 9 7 29 29 H 1.08002 * 120.41474 * 0.02562 * 16 15 3 30 30 H 1.08007 * 119.61545 * 179.72038 * 17 16 15 31 31 H 1.08004 * 119.61444 * 179.68048 * 19 18 17 32 32 H 1.07997 * 120.42093 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5121 1.4425 0.0006 5 7 4.6481 1.4423 -0.0006 6 6 1.5301 2.1638 -1.2491 7 6 2.0323 1.4534 -2.4796 8 1 2.6534 0.5755 -2.3806 9 6 1.6988 1.9243 -3.7318 10 7 0.9420 2.9931 -3.8525 11 14 2.3207 1.0433 -5.2572 12 1 1.8256 -0.3566 -5.2567 13 1 1.8248 1.7429 -6.4696 14 1 3.8057 1.0432 -5.2578 15 6 1.5378 2.1528 1.2306 16 6 1.8628 1.6932 2.4977 17 6 1.3787 2.3669 3.6030 18 7 0.6264 3.4409 3.4624 19 6 0.2972 3.9059 2.2732 20 6 0.7394 3.2812 1.1225 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8932 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 0.4401 2.1638 -1.2491 27 1 1.8938 3.1913 -1.2493 28 1 0.7076 3.3246 -4.7334 29 1 2.4827 0.8172 2.6194 30 1 1.6235 2.0127 4.5935 31 1 -0.3251 4.7854 2.1976 32 1 0.4660 3.6666 0.1514 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034183956.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = 46.362173 kcal Electronic energy + Delta-G solvation = -15677.762121 eV Core-core repulsion = 13216.941765 eV Total energy + Delta-G solvation = -2460.820356 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.27927 -37.50557 -34.80825 -32.79586 -31.36075 -31.02948 -29.00845 -26.27495 -23.95529 -22.76847 -22.21790 -20.34173 -17.80204 -16.14578 -16.11089 -15.64014 -15.07470 -14.60123 -13.94489 -13.82136 -13.41151 -13.32478 -12.97312 -12.76296 -12.21672 -11.81717 -11.61132 -11.41811 -11.30430 -11.02956 -10.80126 -10.75997 -10.42299 -10.21008 -9.59287 -9.34571 -9.20675 -9.18326 -8.90005 -8.51162 -6.16846 -4.19758 1.38161 1.48232 3.26035 3.31065 3.34386 3.43226 3.50193 4.03744 4.34052 4.59618 4.66824 4.95495 5.13883 5.21274 5.36053 5.43405 5.51372 5.63053 5.87392 5.92820 6.01839 6.17569 6.23705 6.24349 6.40371 6.70145 6.74448 6.83418 6.95386 7.33734 7.36976 7.77340 8.13457 8.17682 8.26381 8.82333 9.45663 10.93923 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.008078 C = 0.007599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.741786 B = 3465.291924 C = 3683.691494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C 0.073 3.927 4 C 0.249 3.751 5 N -0.462 5.462 6 C 0.034 3.966 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.889 3.111 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.277 1.277 15 C -0.018 4.018 16 C -0.168 4.168 17 C 0.090 3.910 18 N -0.493 5.493 19 C 0.093 3.907 20 C -0.153 4.153 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.264 0.736 29 H 0.129 0.871 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 -2.593 9.681 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C 0.069 3.931 4 C -0.068 4.068 5 N -0.137 5.137 6 C -0.003 4.003 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.717 3.283 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.203 1.203 15 C -0.027 4.027 16 C -0.188 4.188 17 C -0.066 4.066 18 N -0.202 5.202 19 C -0.064 4.064 20 C -0.172 4.172 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.216 -2.039 10.291 10.722 hybrid contribution 0.303 -0.845 -1.764 1.979 sum -1.913 -2.884 8.527 9.203 Atomic orbital electron populations 1.21766 0.94750 1.01227 1.02708 1.21460 0.97033 0.92614 1.02290 1.17561 0.81478 0.98180 0.95859 1.28757 0.94491 0.92270 0.91327 1.81030 1.12936 1.09379 1.10347 1.19384 0.97708 0.95341 0.87894 1.21039 1.32183 1.12665 0.90451 0.92411 1.24909 0.94847 0.94878 0.99043 1.69905 1.36219 1.22608 1.24037 0.86683 0.79373 0.79907 0.82335 1.20003 1.21139 1.20261 1.20187 0.94482 0.94112 0.93940 1.22033 1.01937 1.01729 0.93110 1.22600 0.93986 0.91511 0.98527 1.67618 1.12697 1.12551 1.27381 1.22757 0.97290 0.98869 0.87443 1.22415 0.97899 0.95482 1.01421 0.93136 0.93527 0.90389 0.89503 0.93014 0.93391 0.95402 0.92644 0.85301 0.83224 0.82799 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.31 37.16 0.35 -1.86 16 2 C -0.10 -1.55 4.52 -26.73 -0.12 -1.67 16 3 C 0.07 1.34 0.35 -158.45 -0.06 1.28 16 4 C 0.25 5.11 12.53 -20.76 -0.26 4.85 16 5 N -0.46 -10.18 18.54 42.15 0.78 -9.40 16 6 C 0.03 0.76 2.35 -27.88 -0.07 0.69 16 7 C -0.53 -13.24 7.80 -34.44 -0.27 -13.50 16 8 H 0.06 1.45 6.39 -52.49 -0.34 1.12 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 11 Si 0.89 20.66 29.54 -169.99 -5.02 15.63 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C -0.02 -0.29 3.48 -104.31 -0.36 -0.65 16 16 C -0.17 -2.40 8.95 -39.44 -0.35 -2.75 16 17 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 18 N -0.49 -7.30 10.36 -13.25 -0.14 -7.44 16 19 C 0.09 1.32 11.18 -17.55 -0.20 1.12 16 20 C -0.15 -2.38 9.05 -39.44 -0.36 -2.74 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.66 7.22 -51.93 -0.37 0.28 16 23 H 0.08 1.33 6.43 -51.93 -0.33 1.00 16 24 H 0.09 1.54 6.62 -51.93 -0.34 1.20 16 25 H 0.05 0.73 7.48 -51.93 -0.39 0.34 16 26 H 0.05 1.06 5.85 -51.93 -0.30 0.76 16 27 H 0.03 0.67 7.56 -51.93 -0.39 0.28 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.13 1.65 7.67 -52.49 -0.40 1.24 16 30 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.15 2.45 6.07 -52.49 -0.32 2.13 16 LS Contribution 273.06 15.07 4.11 4.11 Total: -1.00 -28.67 273.06 -5.11 -33.78 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -3.60 Total: -0.55 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.99 Total: -12.58 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 1.38 Total: -40.40 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.67 -5.11 -33.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034183956.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.143 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds