Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47216 * 2 1 4 4 C 1.47203 * 109.47313 * 179.97438 * 3 2 1 5 5 N 3.43548 * 155.17608 * 359.97438 * 2 1 3 6 6 C 1.53000 * 109.47746 * 300.00305 * 3 2 1 7 7 C 1.50697 * 109.46713 * 300.00307 * 6 3 2 8 8 H 1.07997 * 120.00209 * 359.97438 * 7 6 3 9 9 C 1.37878 * 119.99702 * 179.97438 * 7 6 3 10 10 N 1.31511 * 120.00278 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00029 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47108 * 59.99614 * 11 9 7 13 13 H 1.48498 * 109.46924 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46757 * 299.99600 * 11 9 7 15 15 C 1.50702 * 109.47006 * 60.00745 * 3 2 1 16 16 C 1.38653 * 120.79323 * 59.99702 * 15 3 2 17 17 C 1.38199 * 119.16102 * 180.30354 * 16 15 3 18 18 N 1.31872 * 120.76568 * 359.40208 * 17 16 15 19 19 C 1.31868 * 121.72287 * 0.63104 * 18 17 16 20 20 C 1.38203 * 120.76795 * 359.66432 * 19 18 17 21 21 H 1.09004 * 109.47259 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46403 * 299.99676 * 1 2 3 23 23 H 1.08997 * 109.47093 * 59.99515 * 1 2 3 24 24 H 1.09005 * 109.46403 * 240.00324 * 2 1 3 25 25 H 1.08997 * 109.47093 * 120.00485 * 2 1 3 26 26 H 1.08998 * 109.46695 * 59.99558 * 6 3 2 27 27 H 1.08990 * 109.47500 * 180.02562 * 6 3 2 28 28 H 0.97003 * 120.00516 * 179.97438 * 10 9 7 29 29 H 1.08002 * 120.41474 * 0.02562 * 16 15 3 30 30 H 1.08007 * 119.61545 * 179.72038 * 17 16 15 31 31 H 1.08004 * 119.61444 * 179.68048 * 19 18 17 32 32 H 1.07997 * 120.42093 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5121 1.4425 0.0006 5 7 4.6481 1.4423 -0.0006 6 6 1.5301 2.1638 -1.2491 7 6 2.0323 1.4534 -2.4796 8 1 2.6534 0.5755 -2.3806 9 6 1.6988 1.9243 -3.7318 10 7 0.9420 2.9931 -3.8525 11 14 2.3207 1.0433 -5.2572 12 1 1.8256 -0.3566 -5.2567 13 1 1.8248 1.7429 -6.4696 14 1 3.8057 1.0432 -5.2578 15 6 1.5378 2.1528 1.2306 16 6 1.8628 1.6932 2.4977 17 6 1.3787 2.3669 3.6030 18 7 0.6264 3.4409 3.4624 19 6 0.2972 3.9059 2.2732 20 6 0.7394 3.2812 1.1225 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8932 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 0.4401 2.1638 -1.2491 27 1 1.8938 3.1913 -1.2493 28 1 0.7076 3.3246 -4.7334 29 1 2.4827 0.8172 2.6194 30 1 1.6235 2.0127 4.5935 31 1 -0.3251 4.7854 2.1976 32 1 0.4660 3.6666 0.1514 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034183956.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = 30.521842 kcal Electronic energy + Delta-G solvation = -15678.449009 eV Core-core repulsion = 13216.941765 eV Total energy + Delta-G solvation = -2461.507245 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.50164 -38.93384 -36.44445 -34.69149 -32.58291 -32.18447 -30.57799 -27.90554 -25.45340 -24.02976 -23.57851 -21.78818 -19.31106 -17.88473 -17.43904 -16.91165 -16.52062 -16.13375 -15.31254 -15.25230 -14.77056 -14.63462 -14.38330 -14.19745 -14.04199 -13.27668 -13.24213 -13.08727 -12.64600 -12.63527 -12.44116 -12.37096 -12.06442 -11.72125 -11.17601 -11.07779 -10.53952 -10.51224 -10.36142 -9.99574 -8.19001 -6.25690 0.26560 0.30055 1.40107 1.42009 1.48175 1.81461 1.84185 2.40807 2.84115 3.14572 3.18097 3.61116 3.69369 3.94689 4.11384 4.25498 4.32322 4.34553 4.64145 4.74355 4.77223 4.95740 4.98550 5.05940 5.17995 5.36840 5.43562 5.47774 5.54617 5.65286 5.79452 5.83736 6.18838 6.61724 6.84690 7.07582 7.41845 8.91686 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.008078 C = 0.007599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.741786 B = 3465.291924 C = 3683.691494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C 0.079 3.921 4 C 0.257 3.743 5 N -0.491 5.491 6 C 0.046 3.954 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.017 3.983 10 N -0.919 5.919 11 Si 0.941 3.059 12 H -0.263 1.263 13 H -0.283 1.283 14 H -0.283 1.283 15 C -0.032 4.032 16 C -0.167 4.167 17 C 0.096 3.904 18 N -0.505 5.505 19 C 0.097 3.903 20 C -0.167 4.167 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.046 0.954 27 H -0.001 1.001 28 H 0.264 0.736 29 H 0.147 0.853 30 H 0.185 0.815 31 H 0.178 0.822 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.830 -3.637 11.196 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C 0.076 3.924 4 C -0.060 4.060 5 N -0.167 5.167 6 C 0.008 3.992 7 C -0.569 4.569 8 H 0.073 0.927 9 C -0.182 4.182 10 N -0.559 5.559 11 Si 0.767 3.233 12 H -0.187 1.187 13 H -0.208 1.208 14 H -0.209 1.209 15 C -0.041 4.041 16 C -0.186 4.186 17 C -0.060 4.060 18 N -0.214 5.214 19 C -0.060 4.060 20 C -0.186 4.186 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.018 0.982 28 H 0.073 0.927 29 H 0.165 0.835 30 H 0.202 0.798 31 H 0.195 0.805 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.486 -3.093 11.808 12.457 hybrid contribution 0.392 -0.497 -2.180 2.271 sum -2.093 -3.590 9.628 10.486 Atomic orbital electron populations 1.21683 0.93684 1.02451 1.01833 1.21493 0.97876 0.91033 1.02877 1.17504 0.80092 0.99488 0.95339 1.29229 0.94979 0.91317 0.90463 1.81024 1.13854 1.10514 1.11285 1.19147 0.97365 0.93859 0.88848 1.21396 1.31379 1.12426 0.91674 0.92688 1.25603 0.95320 0.95621 1.01678 1.70001 1.37556 1.23871 1.24446 0.85861 0.78277 0.79564 0.79571 1.18746 1.20846 1.20931 1.20048 0.95575 0.94651 0.93805 1.22200 1.01887 1.02306 0.92246 1.23159 0.92526 0.90526 0.99788 1.67724 1.13200 1.13207 1.27302 1.23078 0.96913 0.99212 0.86749 1.22357 0.98856 0.95943 1.01471 0.90834 0.92519 0.93090 0.91255 0.90026 0.93631 0.98224 0.92739 0.83532 0.79773 0.80453 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.31 71.98 0.67 -3.29 16 2 C -0.09 -2.93 4.52 30.59 0.14 -2.79 16 3 C 0.08 2.88 0.35 -54.73 -0.02 2.86 16 4 C 0.26 10.44 12.53 89.44 1.12 11.56 16 5 N -0.49 -21.47 18.54 20.01 0.37 -21.10 16 6 C 0.05 2.05 2.35 29.85 0.07 2.12 16 7 C -0.53 -27.08 7.80 25.60 0.20 -26.88 16 8 H 0.05 2.79 6.39 -2.91 -0.02 2.77 16 9 C 0.02 0.91 5.46 84.66 0.46 1.38 16 10 N -0.92 -51.18 13.29 21.45 0.28 -50.89 16 11 Si 0.94 42.52 29.54 68.60 2.03 44.54 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 C -0.03 -0.98 3.48 -19.66 -0.07 -1.05 16 16 C -0.17 -4.29 8.95 22.36 0.20 -4.09 16 17 C 0.10 2.27 11.18 84.68 0.95 3.22 16 18 N -0.50 -13.59 10.36 -195.84 -2.03 -15.62 16 19 C 0.10 2.58 11.18 84.68 0.95 3.52 16 20 C -0.17 -5.12 9.05 22.36 0.20 -4.91 16 21 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.06 1.49 7.22 -2.38 -0.02 1.47 16 23 H 0.05 1.72 6.43 -2.39 -0.02 1.71 16 24 H 0.07 2.40 6.62 -2.38 -0.02 2.38 16 25 H 0.08 2.05 7.48 -2.39 -0.02 2.04 16 26 H 0.05 2.08 5.85 -2.39 -0.01 2.06 16 27 H 0.00 -0.03 7.56 -2.39 -0.02 -0.05 16 28 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.15 3.22 7.67 -2.91 -0.02 3.19 16 30 H 0.19 2.99 8.06 -2.91 -0.02 2.96 16 31 H 0.18 3.72 8.06 -2.91 -0.02 3.69 16 32 H 0.14 4.56 6.07 -2.91 -0.02 4.55 16 Total: -1.00 -61.03 273.06 6.65 -54.38 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.13 Total: 7.05 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 4.87 Total: -18.35 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -1.37 Total: -87.62 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -61.03 6.65 -54.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034183956.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.898 kcal (2) G-P(sol) polarization free energy of solvation -61.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds