Wall clock time and date at job start Mon Mar 30 2020 03:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 O 1.42967 * 109.47205 * 239.99636 * 2 1 3 5 5 C 1.43373 * 113.83931 * 298.80084 * 4 2 1 6 6 C 1.53253 * 108.79199 * 302.09876 * 5 4 2 7 7 H 1.09007 * 109.57387 * 174.34003 * 6 5 4 8 8 C 1.50701 * 109.57884 * 294.59385 * 6 5 4 9 9 H 1.08002 * 119.99761 * 119.74110 * 8 6 5 10 10 C 1.37871 * 119.99694 * 300.02673 * 8 6 5 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 6 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 6 13 13 H 1.48504 * 109.47209 * 89.99886 * 12 10 8 14 14 H 1.48501 * 109.47358 * 209.99377 * 12 10 8 15 15 H 1.48496 * 109.47341 * 329.99989 * 12 10 8 16 16 C 1.53265 * 108.95266 * 54.46996 * 6 5 4 17 17 H 1.08998 * 109.55602 * 65.24981 * 16 6 5 18 18 C 1.53003 * 109.56027 * 185.46371 * 16 6 5 19 19 C 1.52991 * 109.46990 * 184.99953 * 18 16 6 20 20 O 1.42904 * 109.47252 * 180.02562 * 19 18 16 21 21 O 1.42966 * 109.47134 * 120.00264 * 2 1 3 22 22 H 1.09002 * 109.47117 * 299.99919 * 1 2 3 23 23 H 1.09005 * 109.47361 * 59.99927 * 1 2 3 24 24 H 1.09000 * 109.47523 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47162 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.46889 * 300.00362 * 3 2 1 27 27 H 1.09002 * 109.46886 * 59.99939 * 3 2 1 28 28 H 1.08994 * 109.73137 * 182.24766 * 5 4 2 29 29 H 1.09009 * 109.53429 * 61.83345 * 5 4 2 30 30 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.46625 * 305.00287 * 18 16 6 32 32 H 1.08997 * 109.46928 * 64.99546 * 18 16 6 33 33 H 1.09006 * 109.47532 * 299.99888 * 19 18 16 34 34 H 1.08997 * 109.47617 * 60.00015 * 19 18 16 35 35 H 0.96698 * 114.00113 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6740 -1.1673 5 6 1.6040 -2.0477 -1.2481 6 6 2.1042 -2.7830 0.0000 7 1 1.7205 -3.8033 0.0012 8 6 3.6110 -2.8104 0.0000 9 1 4.1594 -2.3516 0.8095 10 6 4.2894 -3.4160 -1.0362 11 7 3.6217 -3.9746 -2.0219 12 14 6.1572 -3.4431 -1.0401 13 1 6.6360 -4.6636 -0.3426 14 1 6.6494 -3.4485 -2.4412 15 1 6.6713 -2.2389 -0.3395 16 6 1.6040 -2.0448 1.2466 17 1 0.5167 -2.1038 1.2937 18 6 2.2066 -2.6864 2.4981 19 6 1.6106 -2.0300 3.7449 20 8 2.1738 -2.6288 4.9139 21 8 2.0065 -0.6740 1.1673 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 2.0347 -2.5056 -2.1385 29 1 0.5165 -2.1067 -1.2952 30 1 4.0990 -4.4003 -2.7511 31 1 1.9797 -3.7525 2.5049 32 1 3.2873 -2.5450 2.4943 33 1 1.8375 -0.9639 3.7381 34 1 0.5298 -2.1714 3.7486 35 1 1.8410 -2.2605 5.7437 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034415076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:49 Heat of formation + Delta-G solvation = -152.058679 kcal Electronic energy + Delta-G solvation = -17699.672647 eV Core-core repulsion = 14890.646446 eV Total energy + Delta-G solvation = -2809.026201 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.47982 -36.70343 -34.76643 -34.15454 -31.87304 -30.46380 -28.98923 -27.13529 -24.73916 -24.40240 -21.45499 -20.70835 -18.77620 -17.07893 -16.76943 -16.14155 -15.24478 -14.79358 -14.58694 -14.25029 -13.84275 -13.73434 -13.04536 -12.47697 -12.35544 -11.95495 -11.75147 -11.67684 -11.43851 -11.18134 -11.10457 -10.87705 -10.73918 -10.66338 -10.19995 -9.91346 -9.74609 -9.57976 -9.29909 -8.52438 -8.49850 -8.17685 -5.98066 -3.99377 3.36483 3.42511 3.48679 4.36174 4.50663 4.59211 4.74501 5.31295 5.36020 5.42350 5.52476 5.65897 5.82322 5.87710 5.94594 6.04479 6.06668 6.18727 6.23887 6.26996 6.43718 6.50207 6.67820 6.69369 6.92919 7.01308 7.33602 7.60147 7.89955 7.95668 8.08268 8.28877 8.45057 9.00181 9.63925 11.09968 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.012282 C = 0.008917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.606823 B = 2279.127096 C = 3139.289939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.268 3.732 3 C -0.124 4.124 4 O -0.380 6.380 5 C 0.062 3.938 6 C -0.011 4.011 7 H 0.042 0.958 8 C -0.482 4.482 9 H 0.062 0.938 10 C 0.059 3.941 11 N -0.901 5.901 12 Si 0.895 3.105 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.100 3.900 17 H 0.034 0.966 18 C -0.099 4.099 19 C 0.076 3.924 20 O -0.576 6.576 21 O -0.384 6.384 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.126 0.874 29 H 0.008 0.992 30 H 0.260 0.740 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.034 0.966 35 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.634 6.444 6.332 11.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.190 3.810 3 C -0.181 4.181 4 O -0.300 6.300 5 C -0.014 4.014 6 C -0.030 4.030 7 H 0.059 0.941 8 C -0.520 4.520 9 H 0.080 0.920 10 C -0.141 4.141 11 N -0.541 5.541 12 Si 0.723 3.277 13 H -0.209 1.209 14 H -0.214 1.214 15 H -0.199 1.199 16 C 0.043 3.957 17 H 0.052 0.948 18 C -0.136 4.136 19 C -0.001 4.001 20 O -0.381 6.381 21 O -0.306 6.306 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.050 6.180 5.703 10.359 hybrid contribution 0.232 -0.022 0.246 0.339 sum -5.818 6.158 5.949 10.352 Atomic orbital electron populations 1.22844 0.98097 1.02874 1.02288 1.22367 0.89636 0.90887 0.78107 1.21523 1.02917 0.92012 1.01657 1.88119 1.75970 1.25193 1.40716 1.23002 0.94139 0.80017 1.04228 1.19869 0.97929 0.95283 0.89883 0.94055 1.20948 0.89820 1.34364 1.06823 0.91964 1.24914 0.98430 0.95310 0.95435 1.69766 1.35265 1.38213 1.10882 0.86533 0.85788 0.78306 0.77046 1.20870 1.21374 1.19868 1.22119 0.95019 0.81828 0.96725 0.94809 1.21438 1.03050 0.99270 0.89870 1.22323 0.95522 0.96752 0.85551 1.86520 1.70155 1.65312 1.16090 1.87967 1.76429 1.23804 1.42354 0.91823 0.91517 0.91809 0.91118 0.91257 0.91538 0.85664 0.97414 0.92972 0.90548 0.89371 0.93293 0.94774 0.78464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.32 8.11 37.15 0.30 -3.02 16 2 C 0.27 5.30 1.50 -26.73 -0.04 5.26 16 3 C -0.12 -2.03 9.21 37.16 0.34 -1.69 16 4 O -0.38 -9.02 10.11 -59.04 -0.60 -9.61 16 5 C 0.06 1.50 5.85 37.29 0.22 1.72 16 6 C -0.01 -0.27 2.23 -91.50 -0.20 -0.47 16 7 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 8 C -0.48 -13.27 7.42 -34.44 -0.26 -13.52 16 9 H 0.06 1.76 6.37 -52.49 -0.33 1.42 16 10 C 0.06 1.65 5.29 -17.82 -0.09 1.55 16 11 N -0.90 -25.69 11.31 55.43 0.63 -25.06 16 12 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 15 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.10 2.12 2.05 -26.59 -0.05 2.06 16 17 H 0.03 0.66 6.53 -51.93 -0.34 0.32 16 18 C -0.10 -1.98 4.86 -26.73 -0.13 -2.11 16 19 C 0.08 1.24 6.95 37.15 0.26 1.50 16 20 O -0.58 -9.02 13.66 -35.23 -0.48 -9.50 16 21 O -0.38 -8.22 9.32 -59.04 -0.55 -8.77 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 1.09 5.12 -51.93 -0.27 0.82 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.13 3.39 5.98 -51.93 -0.31 3.08 16 29 H 0.01 0.17 6.54 -51.92 -0.34 -0.17 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.09 1.98 6.52 -51.93 -0.34 1.64 16 33 H 0.05 0.79 7.85 -51.93 -0.41 0.39 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.37 3.71 9.12 45.56 0.42 4.12 16 LS Contribution 276.18 15.07 4.16 4.16 Total: -1.00 -30.81 276.18 -5.95 -36.77 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.44 Total: 3.69 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 0.34 Total: -8.72 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.63 Total: -25.06 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -1.63 Total: -27.89 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.81 -5.95 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034415076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.292 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds