Wall clock time and date at job start Mon Mar 30 2020 03:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 O 1.42967 * 109.47205 * 239.99636 * 2 1 3 5 5 C 1.43373 * 113.83931 * 298.80084 * 4 2 1 6 6 C 1.53253 * 108.79199 * 302.09876 * 5 4 2 7 7 H 1.09007 * 109.57387 * 174.34003 * 6 5 4 8 8 C 1.50701 * 109.57884 * 294.59385 * 6 5 4 9 9 H 1.08002 * 119.99761 * 119.74110 * 8 6 5 10 10 C 1.37871 * 119.99694 * 300.02673 * 8 6 5 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 6 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 6 13 13 H 1.48504 * 109.47209 * 89.99886 * 12 10 8 14 14 H 1.48501 * 109.47358 * 209.99377 * 12 10 8 15 15 H 1.48496 * 109.47341 * 329.99989 * 12 10 8 16 16 C 1.53265 * 108.95266 * 54.46996 * 6 5 4 17 17 H 1.08998 * 109.55602 * 65.24981 * 16 6 5 18 18 C 1.53003 * 109.56027 * 185.46371 * 16 6 5 19 19 C 1.52991 * 109.46990 * 184.99953 * 18 16 6 20 20 O 1.42904 * 109.47252 * 180.02562 * 19 18 16 21 21 O 1.42966 * 109.47134 * 120.00264 * 2 1 3 22 22 H 1.09002 * 109.47117 * 299.99919 * 1 2 3 23 23 H 1.09005 * 109.47361 * 59.99927 * 1 2 3 24 24 H 1.09000 * 109.47523 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47162 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.46889 * 300.00362 * 3 2 1 27 27 H 1.09002 * 109.46886 * 59.99939 * 3 2 1 28 28 H 1.08994 * 109.73137 * 182.24766 * 5 4 2 29 29 H 1.09009 * 109.53429 * 61.83345 * 5 4 2 30 30 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.46625 * 305.00287 * 18 16 6 32 32 H 1.08997 * 109.46928 * 64.99546 * 18 16 6 33 33 H 1.09006 * 109.47532 * 299.99888 * 19 18 16 34 34 H 1.08997 * 109.47617 * 60.00015 * 19 18 16 35 35 H 0.96698 * 114.00113 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6740 -1.1673 5 6 1.6040 -2.0477 -1.2481 6 6 2.1042 -2.7830 0.0000 7 1 1.7205 -3.8033 0.0012 8 6 3.6110 -2.8104 0.0000 9 1 4.1594 -2.3516 0.8095 10 6 4.2894 -3.4160 -1.0362 11 7 3.6217 -3.9746 -2.0219 12 14 6.1572 -3.4431 -1.0401 13 1 6.6360 -4.6636 -0.3426 14 1 6.6494 -3.4485 -2.4412 15 1 6.6713 -2.2389 -0.3395 16 6 1.6040 -2.0448 1.2466 17 1 0.5167 -2.1038 1.2937 18 6 2.2066 -2.6864 2.4981 19 6 1.6106 -2.0300 3.7449 20 8 2.1738 -2.6288 4.9139 21 8 2.0065 -0.6740 1.1673 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 2.0347 -2.5056 -2.1385 29 1 0.5165 -2.1067 -1.2952 30 1 4.0990 -4.4003 -2.7511 31 1 1.9797 -3.7525 2.5049 32 1 3.2873 -2.5450 2.4943 33 1 1.8375 -0.9639 3.7381 34 1 0.5298 -2.1714 3.7486 35 1 1.8410 -2.2605 5.7437 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034415076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:48 Heat of formation + Delta-G solvation = -174.895852 kcal Electronic energy + Delta-G solvation = -17700.662941 eV Core-core repulsion = 14890.646446 eV Total energy + Delta-G solvation = -2810.016495 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14420 -38.00388 -36.40809 -35.98690 -33.75555 -31.92044 -30.74634 -28.51832 -26.71986 -26.02217 -23.10331 -22.23769 -20.55556 -18.45307 -18.33137 -18.08470 -16.94579 -16.49953 -16.32271 -15.72452 -15.55835 -15.33107 -14.54437 -14.34522 -13.83446 -13.42362 -13.18060 -13.04269 -12.97260 -12.92843 -12.77906 -12.65571 -12.51216 -12.27516 -11.94268 -11.70852 -11.56288 -11.23452 -10.81644 -10.53029 -10.30766 -10.02915 -8.11037 -6.17958 1.37897 1.39346 1.49586 2.43142 2.82677 3.09531 3.23066 3.39839 3.93523 4.04120 4.13453 4.24841 4.35217 4.45670 4.47597 4.67585 4.70161 4.78043 4.80024 4.83062 4.86131 4.96742 5.08165 5.18781 5.32497 5.36987 5.49565 5.58595 5.89146 6.21099 6.46190 6.64607 6.85364 6.97559 7.46975 8.95181 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.012282 C = 0.008917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.606823 B = 2279.127096 C = 3139.289939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.246 3.754 3 C -0.121 4.121 4 O -0.405 6.405 5 C 0.070 3.930 6 C -0.018 4.018 7 H 0.019 0.981 8 C -0.491 4.491 9 H 0.047 0.953 10 C 0.012 3.988 11 N -0.922 5.922 12 Si 0.947 3.053 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.277 1.277 16 C 0.108 3.892 17 H 0.059 0.941 18 C -0.099 4.099 19 C 0.088 3.912 20 O -0.594 6.594 21 O -0.395 6.395 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 7.776 7.494 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.170 3.830 3 C -0.178 4.178 4 O -0.326 6.326 5 C -0.006 4.006 6 C -0.036 4.036 7 H 0.037 0.963 8 C -0.529 4.529 9 H 0.065 0.935 10 C -0.185 4.185 11 N -0.563 5.563 12 Si 0.774 3.226 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.202 1.202 16 C 0.051 3.949 17 H 0.077 0.923 18 C -0.136 4.136 19 C 0.011 3.989 20 O -0.403 6.403 21 O -0.316 6.316 22 H 0.110 0.890 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -7.139 7.523 6.891 12.452 hybrid contribution 0.558 -0.405 -0.080 0.694 sum -6.581 7.118 6.811 11.847 Atomic orbital electron populations 1.22758 0.94961 1.02948 1.04503 1.23079 0.92159 0.91570 0.76208 1.21604 1.01709 0.90340 1.04131 1.88068 1.77015 1.24647 1.42909 1.22677 0.95085 0.80513 1.02321 1.19865 0.96474 0.94849 0.92448 0.96251 1.21127 0.91570 1.33959 1.06226 0.93457 1.25588 1.02121 0.95405 0.95392 1.69883 1.36395 1.38777 1.11209 0.85710 0.81548 0.78226 0.77097 1.20095 1.20878 1.20175 1.21977 0.96198 0.81521 0.95211 0.92327 1.21352 1.01116 0.99291 0.91862 1.22087 0.96493 0.96154 0.84198 1.86451 1.70765 1.65826 1.17243 1.87956 1.77156 1.23538 1.42977 0.88980 0.89955 0.92756 0.93122 0.89290 0.88533 0.89092 0.95103 0.93025 0.91273 0.92736 0.92961 0.92116 0.75428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.67 8.11 71.98 0.58 -5.09 16 2 C 0.25 9.27 1.50 30.59 0.05 9.32 16 3 C -0.12 -3.66 9.21 71.98 0.66 -3.00 16 4 O -0.41 -19.13 10.11 -126.22 -1.28 -20.41 16 5 C 0.07 3.44 5.85 72.07 0.42 3.86 16 6 C -0.02 -0.88 2.23 -11.37 -0.03 -0.91 16 7 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 8 C -0.49 -27.73 7.42 25.60 0.19 -27.54 16 9 H 0.05 2.76 6.37 -2.91 -0.02 2.74 16 10 C 0.01 0.70 5.29 84.65 0.45 1.15 16 11 N -0.92 -53.83 11.31 21.45 0.24 -53.59 16 12 Si 0.95 46.06 29.54 68.60 2.03 48.09 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 14 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 15 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 16 C 0.11 4.47 2.05 30.68 0.06 4.54 16 17 H 0.06 2.15 6.53 -2.39 -0.02 2.13 16 18 C -0.10 -3.91 4.86 30.59 0.15 -3.76 16 19 C 0.09 2.67 6.95 71.98 0.50 3.17 16 20 O -0.59 -17.26 13.66 -148.98 -2.04 -19.30 16 21 O -0.39 -16.35 9.32 -126.22 -1.18 -17.53 16 22 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 24 H 0.05 1.68 5.12 -2.39 -0.01 1.67 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 27 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 5.08 5.98 -2.39 -0.01 5.06 16 29 H 0.03 1.34 6.54 -2.38 -0.02 1.32 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.05 2.50 6.52 -2.39 -0.02 2.48 16 33 H 0.05 1.55 7.85 -2.38 -0.02 1.53 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.40 6.75 9.12 -74.06 -0.68 6.07 16 Total: -1.00 -67.31 276.18 1.23 -66.08 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.41 Total: 14.92 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 3.04 Total: -18.26 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.24 Total: -53.59 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -4.49 Total: -57.24 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -67.31 1.23 -66.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034415076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.818 kcal (2) G-P(sol) polarization free energy of solvation -67.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds