Wall clock time and date at job start Mon Mar 30 2020 02:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46771 * 2 1 4 4 H 1.08998 * 109.47891 * 305.46994 * 3 2 1 5 5 C 1.50707 * 109.47183 * 185.46587 * 3 2 1 6 6 H 1.07998 * 119.99875 * 275.27653 * 5 3 2 7 7 C 1.37875 * 119.99740 * 95.27757 * 5 3 2 8 8 N 1.31516 * 119.99933 * 182.04003 * 7 5 3 9 9 Si 1.86803 * 120.00062 * 2.04410 * 7 5 3 10 10 H 1.48494 * 109.47218 * 85.32713 * 9 7 5 11 11 H 1.48496 * 109.46888 * 205.32781 * 9 7 5 12 12 H 1.48500 * 109.47080 * 325.32251 * 9 7 5 13 13 N 1.46507 * 109.47135 * 65.46821 * 3 2 1 14 14 C 1.36032 * 126.34825 * 59.97101 * 13 3 2 15 15 N 1.30110 * 110.10334 * 180.02562 * 14 13 3 16 16 C 1.35790 * 109.63679 * 0.02562 * 15 14 13 17 17 C 1.39738 * 133.59461 * 180.02562 * 16 15 14 18 18 C 1.36606 * 119.88153 * 179.97438 * 17 16 15 19 19 C 1.38770 * 120.67316 * 359.97438 * 18 17 16 20 20 C 1.37857 * 120.45086 * 359.97438 * 19 18 17 21 21 C 1.38048 * 126.34880 * 239.95103 * 13 3 2 22 22 H 1.09006 * 109.47009 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47099 * 299.99406 * 1 2 3 24 24 H 1.09001 * 109.47428 * 60.00182 * 1 2 3 25 25 H 1.09007 * 109.47078 * 240.00646 * 2 1 3 26 26 H 1.08992 * 109.47515 * 120.00000 * 2 1 3 27 27 H 0.96997 * 120.00064 * 180.02562 * 8 7 5 28 28 H 1.08004 * 124.94837 * 0.02562 * 14 13 3 29 29 H 1.08000 * 120.06074 * 359.95146 * 17 16 15 30 30 H 1.08003 * 119.66373 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.77813 * 180.02562 * 19 18 17 32 32 H 1.07995 * 120.15708 * 179.74606 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5988 1.9839 -0.8369 5 6 3.5409 1.4448 -0.1353 6 1 4.1622 1.3300 0.7405 7 6 4.1208 1.5933 -1.3774 8 7 5.4296 1.5551 -1.5008 9 14 3.0475 1.8490 -2.8848 10 1 2.7284 3.2923 -3.0262 11 1 3.7724 1.3815 -4.0935 12 1 1.7886 1.0762 -2.7329 13 7 1.6620 2.0941 1.2566 14 6 2.0237 1.7030 2.5082 15 7 1.5118 2.5072 3.3936 16 6 0.7853 3.4699 2.7696 17 6 0.0406 4.5615 3.2239 18 6 -0.5956 5.3720 2.3269 19 6 -0.5106 5.1239 0.9642 20 6 0.2193 4.0534 0.4932 21 6 0.8730 3.2190 1.3899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 5.8376 1.6600 -2.3745 28 1 2.6454 0.8492 2.7341 29 1 -0.0323 4.7639 4.2823 30 1 -1.1706 6.2145 2.6819 31 1 -1.0190 5.7743 0.2678 32 1 0.2789 3.8623 -0.5680 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677512.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:51 Heat of formation + Delta-G solvation = 59.877223 kcal Electronic energy + Delta-G solvation = -15872.075979 eV Core-core repulsion = 13411.841679 eV Total energy + Delta-G solvation = -2460.234300 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45263 -36.98365 -35.37904 -32.51266 -31.65328 -29.56335 -28.74666 -27.53757 -23.33072 -22.67708 -21.70229 -21.46780 -19.14022 -17.34741 -16.56475 -16.26694 -15.29167 -14.98000 -14.26862 -13.98952 -13.51434 -13.14614 -13.06518 -12.91437 -12.33240 -12.25833 -11.61460 -11.46962 -11.24955 -11.13829 -10.86177 -10.70131 -10.37017 -10.13955 -9.89209 -9.39756 -9.23789 -8.92250 -7.73533 -7.47799 -6.44616 -4.51346 1.49791 2.08671 3.02488 3.10224 3.13784 3.47344 3.59101 4.07348 4.40308 4.84477 4.89941 5.21207 5.39294 5.53435 5.55853 5.66001 5.79434 5.89889 5.93350 6.00067 6.10552 6.21833 6.36740 6.41253 6.60045 6.68899 6.81820 6.92467 7.06622 7.09184 7.27960 7.41612 7.91422 8.12788 8.57083 8.58459 9.12152 10.66828 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026821 B = 0.009581 C = 0.009021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.706730 B = 2921.808830 C = 3102.960370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C 0.232 3.768 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.085 0.915 7 C 0.085 3.915 8 N -0.876 5.876 9 Si 0.867 3.133 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.260 1.260 13 N -0.450 5.450 14 C 0.275 3.725 15 N -0.524 5.524 16 C 0.040 3.960 17 C -0.072 4.072 18 C -0.140 4.140 19 C -0.121 4.121 20 C -0.103 4.103 21 C 0.047 3.953 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.271 0.729 28 H 0.204 0.796 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.404 1.887 1.999 10.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.166 4.166 3 C 0.132 3.868 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.103 0.897 7 C -0.121 4.121 8 N -0.511 5.511 9 Si 0.693 3.307 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.185 1.185 13 N -0.135 5.135 14 C -0.011 4.011 15 N -0.244 5.244 16 C -0.081 4.081 17 C -0.091 4.091 18 C -0.160 4.160 19 C -0.141 4.141 20 C -0.123 4.123 21 C -0.066 4.066 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.220 0.780 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.060 1.728 2.565 10.525 hybrid contribution -0.299 0.143 -1.865 1.894 sum -10.359 1.871 0.701 10.550 Atomic orbital electron populations 1.21878 0.97509 1.00711 1.01173 1.22104 0.93647 0.98032 1.02786 1.19682 0.97057 0.89909 0.80198 0.92610 1.21040 0.87773 1.52615 0.96076 0.89744 1.24950 0.94977 0.93436 0.98738 1.69853 1.09319 1.46953 1.25004 0.86996 0.81194 0.79648 0.82843 1.19492 1.20494 1.18478 1.46410 1.37003 1.20982 1.09107 1.25051 0.97567 0.99064 0.79387 1.70457 1.15731 1.06264 1.31989 1.19128 1.01608 0.97681 0.89644 1.19870 0.96839 0.93041 0.99399 1.20447 1.02195 1.00360 0.93023 1.20697 1.00391 0.97444 0.95529 1.19968 0.99034 0.95293 0.98034 1.19024 0.98929 0.92195 0.96407 0.93303 0.93322 0.93448 0.90632 0.91851 0.91836 0.77983 0.86269 0.86286 0.86178 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.80 37.16 0.36 -2.21 16 2 C -0.13 -2.39 5.38 -26.73 -0.14 -2.54 16 3 C 0.23 5.03 1.98 -69.08 -0.14 4.89 16 4 H 0.06 1.24 4.88 -51.93 -0.25 0.99 16 5 C -0.54 -13.76 8.91 -34.44 -0.31 -14.07 16 6 H 0.08 2.36 7.88 -52.49 -0.41 1.95 16 7 C 0.09 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.88 -24.79 13.96 55.43 0.77 -24.02 16 9 Si 0.87 19.43 26.93 -169.99 -4.58 14.86 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.26 -5.44 6.90 56.52 0.39 -5.05 16 13 N -0.45 -9.51 2.13 -109.93 -0.23 -9.74 16 14 C 0.28 5.53 11.40 -89.79 -1.02 4.51 16 15 N -0.52 -10.92 11.27 -12.05 -0.14 -11.06 16 16 C 0.04 0.81 7.23 -84.70 -0.61 0.19 16 17 C -0.07 -1.22 10.05 -39.61 -0.40 -1.62 16 18 C -0.14 -2.06 9.96 -39.97 -0.40 -2.46 16 19 C -0.12 -1.85 10.03 -39.52 -0.40 -2.24 16 20 C -0.10 -1.87 9.89 -39.50 -0.39 -2.26 16 21 C 0.05 0.97 6.87 -83.99 -0.58 0.39 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.84 7.77 -51.93 -0.40 0.43 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 26 H 0.06 1.14 7.79 -51.93 -0.40 0.73 16 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.20 3.51 8.06 -52.48 -0.42 3.09 16 29 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.11 1.99 7.76 -52.49 -0.41 1.58 16 LS Contribution 273.42 15.07 4.12 4.12 Total: -1.00 -28.88 273.42 -8.16 -37.04 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.99 Total: 4.06 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -4.12 Total: -15.25 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.40 Total: -44.82 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.58 Total: 14.86 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.88 -8.16 -37.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677512.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.913 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds