Wall clock time and date at job start Mon Mar 30 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 H 1.09009 * 109.46747 * 304.15962 * 3 2 1 5 5 C 1.50693 * 109.47292 * 184.16008 * 3 2 1 6 6 H 1.08003 * 119.99731 * 239.99392 * 5 3 2 7 7 C 1.37878 * 120.00284 * 59.99596 * 5 3 2 8 8 N 1.31518 * 119.99519 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00002 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46879 * 90.00812 * 9 7 5 11 11 H 1.48502 * 109.47169 * 209.99952 * 9 7 5 12 12 H 1.48497 * 109.47636 * 330.00404 * 9 7 5 13 13 N 1.46503 * 109.47130 * 64.15575 * 3 2 1 14 14 C 1.39187 * 120.00028 * 205.23949 * 13 3 2 15 15 C 1.39185 * 119.92537 * 354.03940 * 14 13 3 16 16 C 1.37648 * 120.07697 * 180.25366 * 15 14 13 17 17 C 1.39817 * 119.92165 * 359.47589 * 16 15 14 18 18 C 1.43197 * 120.07526 * 180.29718 * 17 16 15 19 19 N 8.93285 * 86.42623 * 9.24673 * 2 1 3 20 20 C 1.39809 * 119.84886 * 0.26823 * 17 16 15 21 21 C 1.37649 * 119.92447 * 0.02562 * 20 17 16 22 22 H 1.09002 * 109.47123 * 294.90769 * 1 2 3 23 23 H 1.08997 * 109.47160 * 54.91669 * 1 2 3 24 24 H 1.09007 * 109.46750 * 174.91277 * 1 2 3 25 25 H 1.08998 * 109.47575 * 239.99536 * 2 1 3 26 26 H 1.09003 * 109.47233 * 119.99471 * 2 1 3 27 27 H 0.96998 * 119.99550 * 180.02562 * 8 7 5 28 28 H 0.96994 * 120.00207 * 25.24062 * 13 3 2 29 29 H 1.07998 * 119.96059 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.04283 * 179.74350 * 16 15 14 31 31 H 1.08005 * 120.03576 * 180.02562 * 20 17 16 32 32 H 1.08004 * 119.95997 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6170 1.9774 -0.8505 5 6 3.5434 1.4438 -0.1031 6 1 4.1379 1.8923 0.6792 7 6 4.1601 0.8725 -1.1959 8 7 3.4361 0.3268 -2.1487 9 14 6.0237 0.8748 -1.3240 10 1 6.5649 -0.3536 -0.6889 11 1 6.4215 0.9088 -2.7543 12 1 6.5661 2.0707 -0.6307 13 7 1.6351 2.1036 1.2431 14 6 1.4987 3.4882 1.2825 15 6 1.8658 4.2538 0.1796 16 6 1.7371 5.6237 0.2170 17 6 1.2266 6.2452 1.3607 18 6 1.0853 7.6696 1.4008 19 7 0.9732 8.7996 1.4326 20 6 0.8538 5.4727 2.4647 21 6 0.9908 4.1037 2.4227 22 1 -0.3633 0.4328 0.9321 23 1 -0.3633 0.5907 -0.8409 24 1 -0.3633 -1.0237 -0.0911 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8699 -0.0754 -2.9174 28 1 1.4621 1.5765 2.0387 29 1 2.2556 3.7726 -0.7053 30 1 2.0261 6.2175 -0.6376 31 1 0.4586 5.9497 3.3496 32 1 0.7034 3.5065 3.2755 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036679764.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:01 Heat of formation + Delta-G solvation = 40.679221 kcal Electronic energy + Delta-G solvation = -15128.127213 eV Core-core repulsion = 12667.060426 eV Total energy + Delta-G solvation = -2461.066788 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.11619 -36.66621 -35.53943 -32.91179 -31.55114 -30.60725 -28.75108 -26.73054 -23.46138 -22.50606 -22.02519 -19.84143 -18.32852 -16.82407 -16.61307 -15.44271 -14.56040 -14.12590 -13.66565 -13.62697 -13.45003 -13.19524 -13.01326 -12.67710 -12.27460 -12.22980 -11.80579 -11.54039 -11.37692 -11.10267 -10.87848 -10.53065 -10.27285 -10.07454 -9.95338 -9.84830 -8.94043 -8.62141 -8.54578 -6.78254 -6.16821 -4.30032 1.50385 1.88836 3.07012 3.19789 3.28138 3.31626 3.46504 4.17917 4.36772 4.44391 4.48343 5.08597 5.27918 5.30951 5.77609 5.98356 6.00747 6.04440 6.14383 6.26912 6.38300 6.61216 6.67263 6.78907 6.85073 6.91241 6.94258 7.21116 7.36310 7.54276 7.74594 7.91912 8.09106 8.10064 8.50780 8.77658 9.38433 10.82454 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025066 B = 0.007232 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.801388 B = 3870.549510 C = 4609.424415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.267 3.733 4 H 0.045 0.955 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.711 5.711 14 C 0.272 3.728 15 C -0.192 4.192 16 C -0.021 4.021 17 C -0.136 4.136 18 C 0.278 3.722 19 N -0.469 5.469 20 C -0.019 4.019 21 C -0.226 4.226 22 H 0.037 0.963 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.107 0.893 26 H 0.038 0.962 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.145 0.855 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 1.309 5.152 6.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.165 3.835 4 H 0.063 0.937 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.329 5.329 14 C 0.159 3.841 15 C -0.214 4.214 16 C -0.043 4.043 17 C -0.143 4.143 18 C -0.035 4.035 19 N -0.146 5.146 20 C -0.041 4.041 21 C -0.249 4.249 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.125 0.875 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.221 0.779 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.357 2.782 4.797 7.052 hybrid contribution 1.075 -0.795 0.187 1.350 sum -3.282 1.987 4.984 6.290 Atomic orbital electron populations 1.21821 0.98705 0.99621 1.00240 1.21881 0.92166 0.99367 1.03411 1.18924 0.94209 0.89291 0.81054 0.93727 1.21536 0.91265 1.37948 1.06114 0.92069 1.24906 0.98486 0.94839 0.95416 1.69839 1.35249 1.37901 1.09676 0.86532 0.85265 0.78577 0.77338 1.20657 1.21106 1.19765 1.45581 1.69742 1.02608 1.14991 1.18173 0.88108 0.85071 0.92796 1.20877 1.07517 0.92663 1.00371 1.20829 0.93765 0.94280 0.95397 1.15661 1.16321 0.83892 0.98432 1.25914 0.92140 0.92788 0.92667 1.81166 1.12001 1.12425 1.08983 1.20632 0.94792 0.92900 0.95761 1.20414 1.11215 0.94376 0.98918 0.94433 0.93509 0.94506 0.87455 0.94302 0.92554 0.77868 0.83759 0.86074 0.86318 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.73 37.16 0.36 -2.13 16 2 C -0.13 -2.62 5.31 -26.73 -0.14 -2.76 16 3 C 0.27 5.65 1.65 -69.08 -0.11 5.53 16 4 H 0.05 1.04 6.73 -51.92 -0.35 0.69 16 5 C -0.53 -12.75 8.33 -34.44 -0.29 -13.03 16 6 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 7 C 0.07 1.64 5.29 -17.82 -0.09 1.54 16 8 N -0.89 -22.68 11.30 55.43 0.63 -22.06 16 9 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.71 -12.53 4.72 -53.27 -0.25 -12.78 16 14 C 0.27 4.56 6.62 -83.82 -0.56 4.01 16 15 C -0.19 -3.31 9.02 -39.45 -0.36 -3.67 16 16 C -0.02 -0.32 9.75 -39.21 -0.38 -0.70 16 17 C -0.14 -2.01 5.74 -106.79 -0.61 -2.62 16 18 C 0.28 4.35 15.33 -22.47 -0.34 4.01 16 19 N -0.47 -8.10 18.54 41.84 0.78 -7.33 16 20 C -0.02 -0.26 9.75 -39.21 -0.38 -0.64 16 21 C -0.23 -3.18 9.87 -39.45 -0.39 -3.57 16 22 H 0.04 0.58 7.87 -51.93 -0.41 0.17 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.11 2.49 5.97 -51.93 -0.31 2.18 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 28 H 0.39 6.08 8.61 -40.82 -0.35 5.72 16 29 H 0.14 2.80 6.12 -52.49 -0.32 2.48 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 281.83 15.07 4.25 4.25 Total: -1.00 -25.30 281.83 -6.74 -32.05 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.82 Total: 5.17 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -3.30 Total: -14.05 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 1.15 Total: -42.16 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -25.30 -6.74 -32.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679764.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.727 kcal (2) G-P(sol) polarization free energy of solvation -25.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds