Wall clock time and date at job start Mon Mar 30 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 H 1.09009 * 109.46747 * 304.15962 * 3 2 1 5 5 C 1.50693 * 109.47292 * 184.16008 * 3 2 1 6 6 H 1.08003 * 119.99731 * 239.99392 * 5 3 2 7 7 C 1.37878 * 120.00284 * 59.99596 * 5 3 2 8 8 N 1.31518 * 119.99519 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00002 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46879 * 90.00812 * 9 7 5 11 11 H 1.48502 * 109.47169 * 209.99952 * 9 7 5 12 12 H 1.48497 * 109.47636 * 330.00404 * 9 7 5 13 13 N 1.46503 * 109.47130 * 64.15575 * 3 2 1 14 14 C 1.39187 * 120.00028 * 205.23949 * 13 3 2 15 15 C 1.39185 * 119.92537 * 354.03940 * 14 13 3 16 16 C 1.37648 * 120.07697 * 180.25366 * 15 14 13 17 17 C 1.39817 * 119.92165 * 359.47589 * 16 15 14 18 18 C 1.43197 * 120.07526 * 180.29718 * 17 16 15 19 19 N 8.93285 * 86.42623 * 9.24673 * 2 1 3 20 20 C 1.39809 * 119.84886 * 0.26823 * 17 16 15 21 21 C 1.37649 * 119.92447 * 0.02562 * 20 17 16 22 22 H 1.09002 * 109.47123 * 294.90769 * 1 2 3 23 23 H 1.08997 * 109.47160 * 54.91669 * 1 2 3 24 24 H 1.09007 * 109.46750 * 174.91277 * 1 2 3 25 25 H 1.08998 * 109.47575 * 239.99536 * 2 1 3 26 26 H 1.09003 * 109.47233 * 119.99471 * 2 1 3 27 27 H 0.96998 * 119.99550 * 180.02562 * 8 7 5 28 28 H 0.96994 * 120.00207 * 25.24062 * 13 3 2 29 29 H 1.07998 * 119.96059 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.04283 * 179.74350 * 16 15 14 31 31 H 1.08005 * 120.03576 * 180.02562 * 20 17 16 32 32 H 1.08004 * 119.95997 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6170 1.9774 -0.8505 5 6 3.5434 1.4438 -0.1031 6 1 4.1379 1.8923 0.6792 7 6 4.1601 0.8725 -1.1959 8 7 3.4361 0.3268 -2.1487 9 14 6.0237 0.8748 -1.3240 10 1 6.5649 -0.3536 -0.6889 11 1 6.4215 0.9088 -2.7543 12 1 6.5661 2.0707 -0.6307 13 7 1.6351 2.1036 1.2431 14 6 1.4987 3.4882 1.2825 15 6 1.8658 4.2538 0.1796 16 6 1.7371 5.6237 0.2170 17 6 1.2266 6.2452 1.3607 18 6 1.0853 7.6696 1.4008 19 7 0.9732 8.7996 1.4326 20 6 0.8538 5.4727 2.4647 21 6 0.9908 4.1037 2.4227 22 1 -0.3633 0.4328 0.9321 23 1 -0.3633 0.5907 -0.8409 24 1 -0.3633 -1.0237 -0.0911 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8699 -0.0754 -2.9174 28 1 1.4621 1.5765 2.0387 29 1 2.2556 3.7726 -0.7053 30 1 2.0261 6.2175 -0.6376 31 1 0.4586 5.9497 3.3496 32 1 0.7034 3.5065 3.2755 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036679764.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:01 Heat of formation + Delta-G solvation = 28.318324 kcal Electronic energy + Delta-G solvation = -15128.663222 eV Core-core repulsion = 12667.060426 eV Total energy + Delta-G solvation = -2461.602796 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.38970 -38.08172 -36.94440 -34.54596 -33.13303 -31.81744 -30.12123 -28.39666 -25.09307 -23.76471 -23.36822 -21.38193 -19.56801 -18.48901 -18.12769 -17.00833 -16.17216 -15.37248 -15.10078 -15.02108 -14.77793 -14.71749 -14.22183 -14.06159 -13.62906 -13.55938 -13.31913 -13.10746 -12.89526 -12.73017 -12.54355 -12.10067 -11.72413 -11.67047 -11.55546 -11.36667 -10.51160 -10.43478 -9.79257 -8.28878 -7.90979 -6.22907 0.26244 0.69668 1.41936 1.46361 1.53593 1.80876 2.19746 2.43001 2.91931 3.17572 3.21586 3.22382 4.12156 4.19346 4.52122 4.60195 4.62070 4.74544 4.82452 4.90582 5.10277 5.21394 5.30532 5.37724 5.43717 5.61331 5.63255 5.67437 5.75850 5.97095 6.04307 6.31137 6.54330 6.67367 6.93151 7.20496 7.48823 8.92083 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025066 B = 0.007232 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.801388 B = 3870.549510 C = 4609.424415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.278 3.722 4 H 0.017 0.983 5 C -0.534 4.534 6 H 0.049 0.951 7 C 0.025 3.975 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.712 5.712 14 C 0.256 3.744 15 C -0.214 4.214 16 C -0.018 4.018 17 C -0.134 4.134 18 C 0.296 3.704 19 N -0.495 5.495 20 C -0.008 4.008 21 C -0.212 4.212 22 H 0.057 0.943 23 H 0.035 0.965 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.263 0.737 28 H 0.399 0.601 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 1.760 7.016 8.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.175 3.825 4 H 0.035 0.965 5 C -0.573 4.573 6 H 0.067 0.933 7 C -0.175 4.175 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.333 5.333 14 C 0.144 3.856 15 C -0.237 4.237 16 C -0.040 4.040 17 C -0.141 4.141 18 C -0.017 4.017 19 N -0.173 5.173 20 C -0.029 4.029 21 C -0.235 4.235 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.234 0.766 29 H 0.131 0.869 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.041 3.254 6.684 8.982 hybrid contribution 1.267 -0.845 -0.363 1.565 sum -3.774 2.409 6.322 7.747 Atomic orbital electron populations 1.21694 0.96065 1.00666 1.00855 1.21705 0.94494 0.98201 1.01950 1.18511 0.92373 0.89795 0.81853 0.96526 1.21783 0.93055 1.36985 1.05463 0.93264 1.25488 1.01481 0.95049 0.95498 1.69951 1.36222 1.38795 1.10021 0.85762 0.81782 0.78310 0.76996 1.20323 1.21210 1.20015 1.45212 1.70803 1.03104 1.14194 1.18408 0.88905 0.84612 0.93693 1.20708 1.09322 0.93604 1.00049 1.20889 0.93303 0.93557 0.96201 1.15725 1.16136 0.83515 0.98674 1.25897 0.91320 0.92642 0.91822 1.81196 1.12964 1.13217 1.09900 1.20985 0.93251 0.92537 0.96174 1.20675 1.09493 0.94809 0.98497 0.92412 0.94532 0.92917 0.90671 0.93932 0.92795 0.76550 0.86860 0.85043 0.82985 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.73 71.98 0.70 -3.75 16 2 C -0.12 -5.05 5.31 30.60 0.16 -4.89 16 3 C 0.28 11.94 1.65 44.24 0.07 12.01 16 4 H 0.02 0.82 6.73 -2.38 -0.02 0.80 16 5 C -0.53 -26.16 8.33 25.60 0.21 -25.95 16 6 H 0.05 2.48 7.81 -2.91 -0.02 2.46 16 7 C 0.02 1.25 5.29 84.65 0.45 1.70 16 8 N -0.91 -47.75 11.30 21.45 0.24 -47.51 16 9 Si 0.94 41.07 29.54 68.60 2.03 43.10 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 13 N -0.71 -24.47 4.72 -322.46 -1.52 -25.99 16 14 C 0.26 8.23 6.62 38.43 0.25 8.49 16 15 C -0.21 -7.43 9.02 22.36 0.20 -7.23 16 16 C -0.02 -0.53 9.75 22.51 0.22 -0.32 16 17 C -0.13 -3.62 5.74 -21.27 -0.12 -3.74 16 18 C 0.30 8.58 15.33 88.33 1.35 9.93 16 19 N -0.50 -16.21 18.54 19.00 0.35 -15.85 16 20 C -0.01 -0.19 9.75 22.51 0.22 0.03 16 21 C -0.21 -5.24 9.87 22.36 0.22 -5.02 16 22 H 0.06 1.65 7.87 -2.39 -0.02 1.63 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.07 3.57 5.97 -2.39 -0.01 3.55 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 28 H 0.40 11.74 8.61 -92.71 -0.80 10.94 16 29 H 0.11 4.65 6.12 -2.91 -0.02 4.63 16 30 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -54.62 281.83 5.38 -49.24 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.33 Total: 15.74 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 3.94 Total: -18.73 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -0.93 Total: -89.35 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -54.62 5.38 -49.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036679764.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.562 kcal (2) G-P(sol) polarization free energy of solvation -54.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds