Wall clock time and date at job start Mon Mar 30 2020 03:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 110.99490 * 2 1 4 4 C 1.46902 * 110.99729 * 123.94873 * 2 1 3 5 5 H 1.09002 * 109.47369 * 296.04948 * 4 2 1 6 6 C 1.47201 * 109.47017 * 176.04972 * 4 2 1 7 7 N 3.39321 * 157.19948 * 131.35185 * 2 1 3 8 8 C 1.50695 * 109.47052 * 56.05053 * 4 2 1 9 9 C 1.37643 * 120.12831 * 24.72823 * 8 4 2 10 10 C 1.38620 * 120.24588 * 179.69996 * 9 8 4 11 11 C 1.38656 * 120.50179 * 0.59608 * 10 9 8 12 12 C 1.37599 * 120.24655 * 359.68162 * 11 10 9 13 13 C 1.40698 * 120.12716 * 204.99480 * 8 4 2 14 14 C 1.41386 * 120.24630 * 0.03016 * 13 8 4 15 15 H 1.08005 * 120.00219 * 334.55098 * 14 13 8 16 16 C 1.39941 * 120.00528 * 154.55430 * 14 13 8 17 17 N 1.30820 * 119.99794 * 342.86006 * 16 14 13 18 18 Si 1.86803 * 120.00507 * 162.85639 * 16 14 13 19 19 H 1.48497 * 109.47189 * 94.64833 * 18 16 14 20 20 H 1.48497 * 109.47312 * 214.65217 * 18 16 14 21 21 H 1.48508 * 109.46790 * 334.65039 * 18 16 14 22 22 H 1.08998 * 109.47341 * 296.04496 * 1 2 3 23 23 H 1.08997 * 109.47054 * 56.05101 * 1 2 3 24 24 H 1.09005 * 109.47001 * 176.04690 * 1 2 3 25 25 H 1.09001 * 109.46914 * 183.94989 * 3 2 1 26 26 H 1.09000 * 109.47678 * 303.94536 * 3 2 1 27 27 H 1.08997 * 109.47355 * 63.95238 * 3 2 1 28 28 H 1.07997 * 119.87680 * 359.97438 * 9 8 4 29 29 H 1.07995 * 119.74750 * 180.29588 * 10 9 8 30 30 H 1.07998 * 119.87709 * 179.69892 * 11 10 9 31 31 H 1.08003 * 120.12362 * 180.02562 * 12 11 10 32 32 H 0.97004 * 120.00228 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.7043 -0.2798 2.0689 6 6 3.4638 -0.8240 1.0527 7 7 4.5971 -0.8688 0.9871 8 6 1.4346 -2.1642 1.1044 9 6 1.0100 -2.7101 -0.0857 10 6 0.4995 -3.9984 -0.1202 11 6 0.3990 -4.7470 1.0427 12 6 0.8122 -4.2194 2.2445 13 6 1.3379 -2.9148 2.2905 14 6 1.7652 -2.3621 3.5198 15 1 2.5134 -1.5834 3.5308 16 6 1.2186 -2.8242 4.7223 17 7 0.1010 -3.5041 4.7143 18 14 2.0848 -2.4702 6.3391 19 1 1.5099 -1.2452 6.9508 20 1 1.8989 -3.6185 7.2621 21 1 3.5343 -2.2653 6.0895 22 1 -0.3634 0.4512 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3633 -1.0253 -0.0709 25 1 3.0827 1.3433 -0.0708 26 1 1.5898 1.9163 -0.8525 27 1 1.7042 1.8724 0.9232 28 1 1.0789 -2.1342 -0.9967 29 1 0.1731 -4.4206 -1.0591 30 1 -0.0047 -5.7479 1.0049 31 1 0.7334 -4.8044 3.1489 32 1 -0.2781 -3.8241 5.5479 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038312855.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:50 Heat of formation + Delta-G solvation = 42.001954 kcal Electronic energy + Delta-G solvation = -15755.854658 eV Core-core repulsion = 13294.845229 eV Total energy + Delta-G solvation = -2461.009430 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39921 -38.15090 -36.78016 -35.50860 -32.56540 -31.30027 -28.92502 -28.05244 -26.83468 -23.60116 -22.61601 -21.80698 -19.18575 -18.52702 -17.44192 -16.83532 -16.47793 -15.77090 -15.24184 -15.02375 -14.66793 -14.49943 -14.29404 -13.77857 -13.56201 -13.29821 -13.12391 -13.01312 -12.80088 -12.71001 -12.67603 -12.55288 -12.20171 -12.05567 -11.34888 -11.15444 -11.02647 -9.39714 -9.23696 -9.15370 -8.64130 -6.34803 0.92280 1.12167 1.37578 1.47140 1.53462 1.69374 1.84063 2.18665 2.75299 2.90752 3.34439 3.85485 4.24794 4.29534 4.47601 4.54638 4.65447 4.76172 4.79669 4.87357 4.97637 5.00334 5.16686 5.25839 5.40108 5.47419 5.73309 5.83432 5.99417 6.14355 6.18166 6.27735 6.41824 6.58051 6.71232 6.94207 7.05749 8.31764 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.010945 C = 0.008648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.601885 B = 2557.555461 C = 3237.026128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.019 3.981 4 C 0.249 3.751 5 H 0.083 0.917 6 C 0.252 3.748 7 N -0.484 5.484 8 C -0.214 4.214 9 C -0.056 4.056 10 C -0.244 4.244 11 C -0.104 4.104 12 C -0.190 4.190 13 C 0.098 3.902 14 C -0.491 4.491 15 H 0.071 0.929 16 C 0.046 3.954 17 N -0.814 5.814 18 Si 0.962 3.038 19 H -0.258 1.258 20 H -0.266 1.266 21 H -0.269 1.269 22 H 0.027 0.973 23 H 0.097 0.903 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.036 0.964 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 5.763 -3.985 7.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.129 4.129 4 C 0.138 3.862 5 H 0.100 0.900 6 C -0.066 4.066 7 N -0.162 5.162 8 C -0.217 4.217 9 C -0.075 4.075 10 C -0.263 4.263 11 C -0.123 4.123 12 C -0.210 4.210 13 C 0.096 3.904 14 C -0.520 4.520 15 H 0.089 0.911 16 C -0.170 4.170 17 N -0.439 5.439 18 Si 0.784 3.216 19 H -0.183 1.183 20 H -0.190 1.190 21 H -0.193 1.193 22 H 0.045 0.955 23 H 0.115 0.885 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.118 0.882 27 H 0.055 0.945 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.085 5.381 -4.357 7.008 hybrid contribution -0.342 0.166 1.785 1.825 sum -1.427 5.547 -2.571 6.278 Atomic orbital electron populations 1.22543 0.84634 1.03599 1.01381 1.61889 1.09990 1.14119 1.40530 1.22523 1.00005 0.87909 1.02430 1.17515 0.79753 0.94622 0.94311 0.89955 1.29462 0.95123 0.90931 0.91050 1.81022 1.13859 1.10894 1.10382 1.19249 1.13419 0.94325 0.94690 1.20729 0.95723 0.94395 0.96614 1.20803 1.11624 0.96413 0.97441 1.21015 0.99094 0.98908 0.93249 1.21264 1.06755 0.96100 0.96832 1.17677 0.89265 0.91186 0.92301 1.19677 1.21313 1.19747 0.91271 0.91123 1.26518 0.93909 0.92746 1.03863 1.69848 1.15287 1.27983 1.30801 0.85477 0.79397 0.79330 0.77375 1.18283 1.19016 1.19320 0.95463 0.88478 0.91015 0.92981 0.88150 0.94492 0.85479 0.86391 0.87434 0.88251 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 8.81 127.69 1.13 1.82 16 2 N -0.54 -16.60 4.00 -938.63 -3.76 -20.36 16 3 C 0.02 0.47 9.30 127.69 1.19 1.66 16 4 C 0.25 9.54 1.51 42.36 0.06 9.60 16 5 H 0.08 3.27 7.05 -2.39 -0.02 3.25 16 6 C 0.25 10.40 13.02 89.44 1.16 11.56 16 7 N -0.48 -21.14 18.54 20.01 0.37 -20.77 16 8 C -0.21 -9.37 4.34 -19.41 -0.08 -9.45 16 9 C -0.06 -2.27 7.32 22.22 0.16 -2.11 16 10 C -0.24 -9.83 10.05 22.46 0.23 -9.60 16 11 C -0.10 -4.59 10.02 22.22 0.22 -4.37 16 12 C -0.19 -9.54 8.69 22.73 0.20 -9.34 16 13 C 0.10 4.95 5.57 -21.29 -0.12 4.83 16 14 C -0.49 -24.87 8.15 23.46 0.19 -24.67 16 15 H 0.07 3.52 6.64 -2.91 -0.02 3.50 16 16 C 0.05 2.22 5.15 85.26 0.44 2.66 16 17 N -0.81 -40.35 10.98 21.82 0.24 -40.11 16 18 Si 0.96 37.43 29.59 68.60 2.03 39.46 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 20 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.10 2.00 8.12 -2.39 -0.02 1.98 16 24 H 0.07 2.25 5.29 -2.38 -0.01 2.24 16 25 H 0.05 1.41 7.10 -2.39 -0.02 1.39 16 26 H 0.10 1.90 8.12 -2.39 -0.02 1.88 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.13 4.54 6.81 -2.91 -0.02 4.52 16 29 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 30 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.10 5.27 6.21 -2.91 -0.02 5.25 16 32 H 0.29 12.98 8.30 -92.71 -0.77 12.22 16 Total: -1.00 -56.03 272.38 4.78 -51.25 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.12 Total: 17.94 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 4.78 Total: -27.41 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -3.15 Total: -81.24 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -56.03 4.78 -51.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038312855.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.248 kcal (2) G-P(sol) polarization free energy of solvation -56.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds