Wall clock time and date at job start Mon Mar 30 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 C 1.47205 * 109.47094 * 180.02562 * 3 2 1 5 5 N 3.43547 * 155.17376 * 359.97438 * 2 1 3 6 6 C 1.52997 * 109.47238 * 59.99933 * 3 2 1 7 7 C 1.50703 * 109.47262 * 59.99870 * 6 3 2 8 8 H 1.07998 * 119.99827 * 0.02562 * 7 6 3 9 9 C 1.37871 * 119.99915 * 179.97438 * 7 6 3 10 10 N 1.31511 * 120.00083 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99795 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47282 * 60.00138 * 11 9 7 13 13 H 1.48504 * 109.47171 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47169 * 300.00328 * 11 9 7 15 15 C 1.50703 * 109.46733 * 299.99811 * 3 2 1 16 16 C 1.38225 * 119.61869 * 284.99827 * 15 3 2 17 17 C 1.38635 * 119.15939 * 179.97438 * 16 15 3 18 18 C 1.38675 * 118.41956 * 0.02562 * 17 16 15 19 19 C 1.38186 * 119.16332 * 0.27967 * 18 17 16 20 20 N 1.31860 * 119.61591 * 104.98182 * 15 3 2 21 21 H 1.08997 * 109.46887 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46961 * 300.00043 * 1 2 3 23 23 H 1.08995 * 109.47015 * 59.99723 * 1 2 3 24 24 H 1.09001 * 109.46961 * 239.99957 * 2 1 3 25 25 H 1.09005 * 109.47413 * 119.99906 * 2 1 3 26 26 H 1.08997 * 109.47077 * 180.02562 * 6 3 2 27 27 H 1.08999 * 109.47367 * 300.00149 * 6 3 2 28 28 H 0.97002 * 119.99831 * 179.97438 * 10 9 7 29 29 H 1.07997 * 120.42090 * 359.96022 * 16 15 3 30 30 H 1.07999 * 120.78848 * 179.97438 * 17 16 15 31 31 H 1.08002 * 120.41399 * 179.97438 * 18 17 16 32 32 H 1.07999 * 119.61418 * 179.70216 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5121 1.4425 -0.0006 5 7 4.6480 1.4424 -0.0006 6 6 1.5301 2.1638 1.2492 7 6 2.0323 1.4534 2.4797 8 1 2.6535 0.5755 2.3806 9 6 1.6997 1.9248 3.7319 10 7 0.9436 2.9941 3.8525 11 14 2.3229 1.0446 5.2571 12 1 3.8079 1.0446 5.2567 13 1 1.8278 1.7446 6.4697 14 1 1.8279 -0.3555 5.2577 15 6 1.5377 2.1528 -1.2305 16 6 2.1111 1.8806 -2.4584 17 6 1.6413 2.5391 -3.5843 18 6 0.6079 3.4513 -3.4321 19 6 0.0885 3.6764 -2.1715 20 7 0.5560 3.0266 -1.1234 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8930 3.1915 1.2489 27 1 0.4401 2.1638 1.2492 28 1 0.7093 3.3255 4.7335 29 1 2.9151 1.1641 -2.5397 30 1 2.0704 2.3469 -4.5565 31 1 0.2174 3.9828 -4.2874 32 1 -0.7131 4.3888 -2.0440 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039117488.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:04 Heat of formation + Delta-G solvation = 51.561290 kcal Electronic energy + Delta-G solvation = -15689.087425 eV Core-core repulsion = 13228.492519 eV Total energy + Delta-G solvation = -2460.594906 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28217 -37.17248 -34.64238 -32.54323 -32.19682 -30.66403 -28.86662 -26.08495 -23.73680 -22.76035 -22.34144 -20.23457 -17.73132 -16.16938 -15.87041 -15.85001 -15.02528 -14.57217 -13.95196 -13.88540 -13.17020 -12.95860 -12.93408 -12.58914 -12.13750 -11.96419 -11.54185 -11.37507 -11.22663 -10.90791 -10.67604 -10.64366 -10.23505 -10.11099 -9.69610 -9.55943 -9.07445 -8.91894 -8.73542 -8.34644 -5.99719 -4.02856 1.30196 1.50455 3.34591 3.39302 3.42263 3.44529 3.54617 4.03078 4.41872 4.45782 4.91219 4.97446 5.01709 5.25965 5.34607 5.36875 5.57550 5.68085 5.79862 5.91683 6.06915 6.17723 6.30095 6.33377 6.42428 6.63295 6.80113 6.91061 6.98763 7.67804 7.73847 7.97746 8.29941 8.31588 8.36196 9.01321 9.60815 11.10585 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.008193 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.931018 B = 3416.532079 C = 3658.491573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C 0.081 3.919 4 C 0.250 3.750 5 N -0.463 5.463 6 C 0.051 3.949 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.065 3.935 10 N -0.887 5.887 11 Si 0.886 3.114 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.157 3.843 16 C -0.172 4.172 17 C -0.077 4.077 18 C -0.185 4.185 19 C 0.101 3.899 20 N -0.451 5.451 21 H 0.047 0.953 22 H 0.080 0.920 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.262 0.738 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.547 -2.048 -13.273 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C 0.076 3.924 4 C -0.068 4.068 5 N -0.138 5.138 6 C 0.013 3.987 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.137 4.137 10 N -0.525 5.525 11 Si 0.714 3.286 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.018 3.982 16 C -0.192 4.192 17 C -0.103 4.103 18 C -0.205 4.205 19 C -0.057 4.057 20 N -0.159 5.159 21 H 0.066 0.934 22 H 0.099 0.901 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.268 -1.758 -12.316 12.646 hybrid contribution 0.355 -0.470 0.019 0.590 sum -1.913 -2.229 -12.297 12.643 Atomic orbital electron populations 1.21729 0.94614 1.00796 1.02956 1.21457 0.97208 0.92417 1.02226 1.17509 0.81066 0.97751 0.96031 1.28778 0.94555 0.92172 0.91256 1.81017 1.12867 1.09481 1.10425 1.19146 0.98488 0.94687 0.86407 1.21151 1.31993 1.12536 0.90870 0.92643 1.24906 0.95029 0.94912 0.98864 1.69955 1.36322 1.22581 1.23642 0.86744 0.79294 0.79912 0.82639 1.20373 1.21240 1.20083 1.20979 0.91514 0.92425 0.93242 1.21984 1.01883 1.01854 0.93493 1.21475 0.95396 0.94850 0.98593 1.22098 0.98785 1.00439 0.99193 1.22848 0.98073 0.96797 0.87937 1.67601 1.10250 1.05294 1.32753 0.93354 0.90100 0.93798 0.93214 0.89287 0.95770 0.92507 0.92869 0.85399 0.85256 0.85208 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.31 37.16 0.35 -2.02 16 2 C -0.09 -1.65 4.63 -26.73 -0.12 -1.77 16 3 C 0.08 1.62 0.36 -158.44 -0.06 1.56 16 4 C 0.25 5.35 11.83 -20.76 -0.25 5.10 16 5 N -0.46 -10.39 18.54 42.15 0.78 -9.60 16 6 C 0.05 1.24 3.00 -27.88 -0.08 1.16 16 7 C -0.53 -14.12 7.80 -34.44 -0.27 -14.38 16 8 H 0.06 1.46 6.39 -52.49 -0.34 1.12 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 11 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.16 2.80 4.30 -82.58 -0.36 2.45 16 16 C -0.17 -2.56 9.08 -39.44 -0.36 -2.92 16 17 C -0.08 -0.94 10.18 -39.27 -0.40 -1.34 16 18 C -0.19 -2.15 10.11 -39.44 -0.40 -2.55 16 19 C 0.10 1.41 11.18 -17.55 -0.20 1.21 16 20 N -0.45 -8.09 8.94 -9.47 -0.08 -8.17 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 1.54 6.43 -51.93 -0.33 1.20 16 23 H 0.04 0.69 7.14 -51.93 -0.37 0.32 16 24 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 25 H 0.09 1.66 6.62 -51.93 -0.34 1.32 16 26 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.44 6.14 -51.93 -0.32 1.12 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.13 1.79 7.56 -52.49 -0.40 1.39 16 30 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 276.00 15.07 4.16 4.16 Total: -1.00 -30.64 276.00 -5.44 -36.08 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -3.77 Total: -2.05 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.24 Total: -11.80 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 1.43 Total: -42.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.64 -5.44 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039117488.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.640 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds