Wall clock time and date at job start Mon Mar 30 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 C 1.47205 * 109.47094 * 180.02562 * 3 2 1 5 5 N 3.43547 * 155.17376 * 359.97438 * 2 1 3 6 6 C 1.52997 * 109.47238 * 59.99933 * 3 2 1 7 7 C 1.50703 * 109.47262 * 59.99870 * 6 3 2 8 8 H 1.07998 * 119.99827 * 0.02562 * 7 6 3 9 9 C 1.37871 * 119.99915 * 179.97438 * 7 6 3 10 10 N 1.31511 * 120.00083 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99795 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47282 * 60.00138 * 11 9 7 13 13 H 1.48504 * 109.47171 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47169 * 300.00328 * 11 9 7 15 15 C 1.50703 * 109.46733 * 299.99811 * 3 2 1 16 16 C 1.38225 * 119.61869 * 284.99827 * 15 3 2 17 17 C 1.38635 * 119.15939 * 179.97438 * 16 15 3 18 18 C 1.38675 * 118.41956 * 0.02562 * 17 16 15 19 19 C 1.38186 * 119.16332 * 0.27967 * 18 17 16 20 20 N 1.31860 * 119.61591 * 104.98182 * 15 3 2 21 21 H 1.08997 * 109.46887 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46961 * 300.00043 * 1 2 3 23 23 H 1.08995 * 109.47015 * 59.99723 * 1 2 3 24 24 H 1.09001 * 109.46961 * 239.99957 * 2 1 3 25 25 H 1.09005 * 109.47413 * 119.99906 * 2 1 3 26 26 H 1.08997 * 109.47077 * 180.02562 * 6 3 2 27 27 H 1.08999 * 109.47367 * 300.00149 * 6 3 2 28 28 H 0.97002 * 119.99831 * 179.97438 * 10 9 7 29 29 H 1.07997 * 120.42090 * 359.96022 * 16 15 3 30 30 H 1.07999 * 120.78848 * 179.97438 * 17 16 15 31 31 H 1.08002 * 120.41399 * 179.97438 * 18 17 16 32 32 H 1.07999 * 119.61418 * 179.70216 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5121 1.4425 -0.0006 5 7 4.6480 1.4424 -0.0006 6 6 1.5301 2.1638 1.2492 7 6 2.0323 1.4534 2.4797 8 1 2.6535 0.5755 2.3806 9 6 1.6997 1.9248 3.7319 10 7 0.9436 2.9941 3.8525 11 14 2.3229 1.0446 5.2571 12 1 3.8079 1.0446 5.2567 13 1 1.8278 1.7446 6.4697 14 1 1.8279 -0.3555 5.2577 15 6 1.5377 2.1528 -1.2305 16 6 2.1111 1.8806 -2.4584 17 6 1.6413 2.5391 -3.5843 18 6 0.6079 3.4513 -3.4321 19 6 0.0885 3.6764 -2.1715 20 7 0.5560 3.0266 -1.1234 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8930 3.1915 1.2489 27 1 0.4401 2.1638 1.2492 28 1 0.7093 3.3255 4.7335 29 1 2.9151 1.1641 -2.5397 30 1 2.0704 2.3469 -4.5565 31 1 0.2174 3.9828 -4.2874 32 1 -0.7131 4.3888 -2.0440 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039117488.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:04 Heat of formation + Delta-G solvation = 33.300232 kcal Electronic energy + Delta-G solvation = -15689.879284 eV Core-core repulsion = 13228.492519 eV Total energy + Delta-G solvation = -2461.386765 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.49383 -38.68468 -36.33454 -34.56522 -33.28686 -31.84771 -30.57260 -27.79088 -25.24679 -23.97017 -23.80063 -21.76656 -19.25485 -17.84555 -17.31713 -17.08503 -16.44989 -16.20477 -15.43986 -15.23943 -14.75610 -14.50819 -14.15037 -14.01497 -13.83606 -13.43394 -13.19086 -13.06014 -12.80808 -12.55543 -12.47561 -12.25234 -11.99628 -11.74238 -11.25958 -11.05965 -10.72418 -10.50840 -10.11411 -9.85986 -8.14087 -6.22994 0.20997 0.47990 1.40549 1.42262 1.49346 1.77773 1.82070 2.42752 2.80376 3.06842 3.20415 3.55536 3.89117 4.08952 4.12913 4.24276 4.32448 4.36791 4.62127 4.73351 4.82043 4.90390 4.98140 5.14964 5.27229 5.32563 5.39404 5.50868 5.60758 5.71557 5.85384 5.92137 6.23553 6.59573 6.90433 7.22508 7.44142 8.96783 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.008193 C = 0.007652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.931018 B = 3416.532079 C = 3658.491573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C 0.084 3.916 4 C 0.258 3.742 5 N -0.485 5.485 6 C 0.068 3.932 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.012 3.988 10 N -0.922 5.922 11 Si 0.947 3.053 12 H -0.281 1.281 13 H -0.283 1.283 14 H -0.260 1.260 15 C 0.129 3.871 16 C -0.177 4.177 17 C -0.070 4.070 18 C -0.165 4.165 19 C 0.086 3.914 20 N -0.497 5.497 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.072 0.928 26 H -0.019 1.019 27 H 0.042 0.958 28 H 0.262 0.738 29 H 0.134 0.866 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 -2.867 -15.458 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 C 0.079 3.921 4 C -0.059 4.059 5 N -0.161 5.161 6 C 0.030 3.970 7 C -0.572 4.572 8 H 0.075 0.925 9 C -0.187 4.187 10 N -0.562 5.562 11 Si 0.772 3.228 12 H -0.207 1.207 13 H -0.208 1.208 14 H -0.185 1.185 15 C -0.009 4.009 16 C -0.197 4.197 17 C -0.096 4.096 18 C -0.184 4.184 19 C -0.072 4.072 20 N -0.205 5.205 21 H 0.093 0.907 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.000 1.000 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.187 0.813 31 H 0.191 0.809 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.421 -2.594 -14.509 14.936 hybrid contribution 0.365 -0.131 0.598 0.713 sum -2.056 -2.726 -13.911 14.324 Atomic orbital electron populations 1.21613 0.93859 1.02040 1.01554 1.21478 0.97788 0.90890 1.02940 1.17418 0.80057 0.99135 0.95461 1.29131 0.94915 0.91369 0.90532 1.80998 1.13488 1.10443 1.11201 1.18773 0.97332 0.92625 0.88261 1.21521 1.31350 1.12423 0.91930 0.92473 1.25718 0.95358 0.95664 1.01973 1.70082 1.37771 1.24108 1.24249 0.85783 0.78331 0.79520 0.79158 1.20655 1.20802 1.18495 1.20616 0.93197 0.94003 0.93113 1.22069 1.01935 1.02455 0.93279 1.21944 0.94831 0.93590 0.99216 1.22536 0.97342 0.99192 0.99334 1.23325 0.98717 0.96817 0.88311 1.67456 1.11322 1.06481 1.35281 0.90651 0.93492 0.93160 0.89999 0.90902 1.00046 0.94023 0.92888 0.84804 0.81308 0.80937 0.80763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.31 71.98 0.67 -3.68 16 2 C -0.09 -3.19 4.63 30.60 0.14 -3.04 16 3 C 0.08 3.40 0.36 -54.73 -0.02 3.38 16 4 C 0.26 11.13 11.83 89.44 1.06 12.19 16 5 N -0.49 -21.90 18.54 20.01 0.37 -21.53 16 6 C 0.07 3.50 3.00 29.85 0.09 3.59 16 7 C -0.53 -29.44 7.80 25.60 0.20 -29.24 16 8 H 0.06 3.07 6.39 -2.91 -0.02 3.05 16 9 C 0.01 0.66 5.46 84.65 0.46 1.13 16 10 N -0.92 -55.42 13.29 21.44 0.28 -55.14 16 11 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 15 C 0.13 4.55 4.30 42.55 0.18 4.74 16 16 C -0.18 -4.92 9.08 22.36 0.20 -4.72 16 17 C -0.07 -1.42 10.18 22.47 0.23 -1.19 16 18 C -0.16 -3.16 10.11 22.36 0.23 -2.94 16 19 C 0.09 2.24 11.18 84.67 0.95 3.18 16 20 N -0.50 -17.88 8.94 -183.88 -1.64 -19.53 16 21 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.05 1.84 6.43 -2.39 -0.02 1.82 16 23 H 0.05 1.56 7.14 -2.39 -0.02 1.54 16 24 H 0.08 2.30 8.09 -2.39 -0.02 2.28 16 25 H 0.07 2.72 6.62 -2.38 -0.02 2.70 16 26 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 27 H 0.04 2.24 6.14 -2.39 -0.01 2.23 16 28 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.13 3.46 7.56 -2.91 -0.02 3.43 16 30 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -68.92 276.00 6.55 -62.38 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.12 Total: 3.82 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 4.39 Total: -16.60 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -0.99 Total: -96.19 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -68.92 6.55 -62.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039117488.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.676 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds