Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46878 * 2 1 4 4 C 1.47197 * 109.46995 * 179.97438 * 3 2 1 5 5 N 3.43549 * 155.17043 * 0.02562 * 2 1 3 6 6 C 1.52993 * 109.47150 * 299.99748 * 3 2 1 7 7 C 1.50697 * 109.47417 * 300.00052 * 6 3 2 8 8 H 1.08005 * 119.99862 * 0.02562 * 7 6 3 9 9 C 1.37869 * 120.00441 * 180.02562 * 7 6 3 10 10 N 1.31514 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00200 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47364 * 89.99712 * 11 9 7 13 13 H 1.48502 * 109.47006 * 209.99837 * 11 9 7 14 14 H 1.48506 * 109.47095 * 329.99486 * 11 9 7 15 15 C 1.50707 * 109.46738 * 59.99761 * 3 2 1 16 16 C 1.38227 * 119.62024 * 44.97865 * 15 3 2 17 17 C 1.38627 * 119.15702 * 179.78495 * 16 15 3 18 18 C 1.38669 * 118.42389 * 0.47826 * 17 16 15 19 19 C 1.38186 * 119.16143 * 359.49762 * 18 17 16 20 20 N 1.31856 * 119.61172 * 224.99616 * 15 3 2 21 21 H 1.09002 * 109.46860 * 60.00418 * 1 2 3 22 22 H 1.09007 * 109.47202 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47514 * 300.00117 * 1 2 3 24 24 H 1.08998 * 109.47008 * 239.99734 * 2 1 3 25 25 H 1.09000 * 109.46399 * 119.99814 * 2 1 3 26 26 H 1.09001 * 109.47183 * 60.00089 * 6 3 2 27 27 H 1.09000 * 109.47116 * 179.97438 * 6 3 2 28 28 H 0.97001 * 120.00282 * 180.02562 * 10 9 7 29 29 H 1.07998 * 120.41916 * 359.97438 * 16 15 3 30 30 H 1.08008 * 120.78688 * 180.22921 * 17 16 15 31 31 H 1.08002 * 120.42244 * 179.78279 * 18 17 16 32 32 H 1.07996 * 119.61757 * 180.25243 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5119 1.4426 0.0006 5 7 4.6479 1.4426 0.0006 6 6 1.5300 2.1637 -1.2492 7 6 2.0324 1.4534 -2.4797 8 1 2.6530 0.5750 -2.3806 9 6 1.6998 1.9247 -3.7319 10 7 0.9437 2.9939 -3.8526 11 14 2.3220 1.0437 -5.2571 12 1 1.3431 0.0026 -5.6614 13 1 2.4877 2.0228 -6.3613 14 1 3.6297 0.4053 -4.9612 15 6 1.5375 2.1529 1.2305 16 6 1.6026 1.5214 2.4584 17 6 1.1418 2.1854 3.5846 18 6 0.6212 3.4616 3.4317 19 6 0.5890 4.0291 2.1722 20 7 1.0406 3.3695 1.1232 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 0.4400 2.1637 -1.2493 27 1 1.8929 3.1915 -1.2490 28 1 0.7093 3.3253 -4.7336 29 1 2.0100 0.5245 2.5397 30 1 1.1835 1.7183 4.5576 31 1 0.2499 4.0069 4.2868 32 1 0.1889 5.0242 2.0453 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039117490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = 51.942207 kcal Electronic energy + Delta-G solvation = -15686.790230 eV Core-core repulsion = 13226.211843 eV Total energy + Delta-G solvation = -2460.578388 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29538 -37.17224 -34.62575 -32.59015 -32.28308 -30.49087 -28.93556 -26.07695 -23.77391 -22.76424 -22.27233 -20.30092 -17.72447 -16.27666 -16.00755 -15.79296 -14.98568 -14.41933 -14.05352 -13.77641 -13.22637 -12.94566 -12.90247 -12.61282 -12.17000 -11.99205 -11.58260 -11.32282 -11.21921 -10.93268 -10.69088 -10.60797 -10.22477 -10.10975 -9.67406 -9.59564 -9.07044 -8.88203 -8.76500 -8.34876 -5.99641 -4.02627 1.29158 1.50771 3.32784 3.40054 3.44071 3.48035 3.57945 4.01847 4.45934 4.48585 4.91883 4.95850 5.02862 5.23357 5.32956 5.37129 5.56111 5.64027 5.77004 5.94327 6.02508 6.17405 6.24825 6.32472 6.41354 6.62412 6.79367 6.90245 6.92843 7.66990 7.75325 7.98495 8.30960 8.34735 8.36323 9.01833 9.61074 11.10705 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032161 B = 0.008114 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.406773 B = 3449.904866 C = 3625.691486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C 0.082 3.918 4 C 0.252 3.748 5 N -0.464 5.464 6 C 0.050 3.950 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.065 3.935 10 N -0.887 5.887 11 Si 0.886 3.114 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.155 3.845 16 C -0.168 4.168 17 C -0.080 4.080 18 C -0.184 4.184 19 C 0.100 3.900 20 N -0.454 5.454 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.261 0.739 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -2.527 13.370 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C 0.077 3.923 4 C -0.065 4.065 5 N -0.139 5.139 6 C 0.012 3.988 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.138 4.138 10 N -0.525 5.525 11 Si 0.714 3.286 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.015 3.985 16 C -0.188 4.188 17 C -0.106 4.106 18 C -0.204 4.204 19 C -0.058 4.058 20 N -0.162 5.162 21 H 0.097 0.903 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.409 -1.999 12.415 12.803 hybrid contribution -0.086 -0.718 -0.045 0.724 sum -2.495 -2.716 12.370 12.908 Atomic orbital electron populations 1.21770 0.94764 1.01074 1.02807 1.21513 0.97053 0.92763 1.02349 1.17501 0.81337 0.97433 0.96010 1.28723 0.94428 0.92111 0.91279 1.81010 1.12908 1.09528 1.10445 1.19135 0.97618 0.95586 0.86434 1.21190 1.31947 1.12439 0.90859 0.92591 1.24911 0.95067 0.94897 0.98879 1.69966 1.36436 1.22578 1.23519 0.86683 0.79345 0.79528 0.83060 1.20538 1.21222 1.19954 1.21013 0.93642 0.90464 0.93348 1.22021 1.01873 1.01662 0.93210 1.21491 0.95878 0.94576 0.98624 1.22108 1.02465 0.96645 0.99146 1.22845 0.95403 0.99574 0.87968 1.67618 1.08081 1.07559 1.32899 0.90261 0.93116 0.93753 0.89227 0.93011 0.93712 0.94586 0.92939 0.84864 0.85194 0.85209 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.30 37.16 0.35 -1.99 16 2 C -0.10 -1.67 4.32 -26.73 -0.12 -1.79 16 3 C 0.08 1.63 0.36 -158.45 -0.06 1.57 16 4 C 0.25 5.49 12.79 -20.76 -0.27 5.23 16 5 N -0.46 -10.66 18.54 42.15 0.78 -9.87 16 6 C 0.05 1.23 3.00 -27.89 -0.08 1.15 16 7 C -0.53 -14.09 7.80 -34.44 -0.27 -14.36 16 8 H 0.06 1.48 6.39 -52.48 -0.34 1.14 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 11 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.15 2.75 4.43 -82.58 -0.37 2.38 16 16 C -0.17 -2.39 8.63 -39.44 -0.34 -2.73 16 17 C -0.08 -0.94 10.18 -39.28 -0.40 -1.34 16 18 C -0.18 -2.14 10.11 -39.44 -0.40 -2.53 16 19 C 0.10 1.42 11.18 -17.55 -0.20 1.22 16 20 N -0.45 -8.38 9.03 -9.47 -0.09 -8.47 16 21 H 0.08 1.47 6.43 -51.93 -0.33 1.14 16 22 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 23 H 0.04 0.66 6.85 -51.93 -0.36 0.31 16 24 H 0.09 1.64 6.62 -51.93 -0.34 1.30 16 25 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 26 H 0.04 1.14 6.43 -51.93 -0.33 0.80 16 27 H 0.04 0.99 7.85 -51.93 -0.41 0.58 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.13 1.66 6.73 -52.49 -0.35 1.31 16 30 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 273.88 15.07 4.13 4.13 Total: -1.00 -31.18 273.88 -5.34 -36.52 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.64 Total: -2.19 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -2.24 Total: -11.48 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 1.43 Total: -43.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.18 -5.34 -36.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039117490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.465 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds