Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46878 * 2 1 4 4 C 1.47197 * 109.46995 * 179.97438 * 3 2 1 5 5 N 3.43549 * 155.17043 * 0.02562 * 2 1 3 6 6 C 1.52993 * 109.47150 * 299.99748 * 3 2 1 7 7 C 1.50697 * 109.47417 * 300.00052 * 6 3 2 8 8 H 1.08005 * 119.99862 * 0.02562 * 7 6 3 9 9 C 1.37869 * 120.00441 * 180.02562 * 7 6 3 10 10 N 1.31514 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00200 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47364 * 89.99712 * 11 9 7 13 13 H 1.48502 * 109.47006 * 209.99837 * 11 9 7 14 14 H 1.48506 * 109.47095 * 329.99486 * 11 9 7 15 15 C 1.50707 * 109.46738 * 59.99761 * 3 2 1 16 16 C 1.38227 * 119.62024 * 44.97865 * 15 3 2 17 17 C 1.38627 * 119.15702 * 179.78495 * 16 15 3 18 18 C 1.38669 * 118.42389 * 0.47826 * 17 16 15 19 19 C 1.38186 * 119.16143 * 359.49762 * 18 17 16 20 20 N 1.31856 * 119.61172 * 224.99616 * 15 3 2 21 21 H 1.09002 * 109.46860 * 60.00418 * 1 2 3 22 22 H 1.09007 * 109.47202 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47514 * 300.00117 * 1 2 3 24 24 H 1.08998 * 109.47008 * 239.99734 * 2 1 3 25 25 H 1.09000 * 109.46399 * 119.99814 * 2 1 3 26 26 H 1.09001 * 109.47183 * 60.00089 * 6 3 2 27 27 H 1.09000 * 109.47116 * 179.97438 * 6 3 2 28 28 H 0.97001 * 120.00282 * 180.02562 * 10 9 7 29 29 H 1.07998 * 120.41916 * 359.97438 * 16 15 3 30 30 H 1.08008 * 120.78688 * 180.22921 * 17 16 15 31 31 H 1.08002 * 120.42244 * 179.78279 * 18 17 16 32 32 H 1.07996 * 119.61757 * 180.25243 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5119 1.4426 0.0006 5 7 4.6479 1.4426 0.0006 6 6 1.5300 2.1637 -1.2492 7 6 2.0324 1.4534 -2.4797 8 1 2.6530 0.5750 -2.3806 9 6 1.6998 1.9247 -3.7319 10 7 0.9437 2.9939 -3.8526 11 14 2.3220 1.0437 -5.2571 12 1 1.3431 0.0026 -5.6614 13 1 2.4877 2.0228 -6.3613 14 1 3.6297 0.4053 -4.9612 15 6 1.5375 2.1529 1.2305 16 6 1.6026 1.5214 2.4584 17 6 1.1418 2.1854 3.5846 18 6 0.6212 3.4616 3.4317 19 6 0.5890 4.0291 2.1722 20 7 1.0406 3.3695 1.1232 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 0.4400 2.1637 -1.2493 27 1 1.8929 3.1915 -1.2490 28 1 0.7093 3.3253 -4.7336 29 1 2.0100 0.5245 2.5397 30 1 1.1835 1.7183 4.5576 31 1 0.2499 4.0069 4.2868 32 1 0.1889 5.0242 2.0453 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039117490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = 32.909380 kcal Electronic energy + Delta-G solvation = -15687.615556 eV Core-core repulsion = 13226.211843 eV Total energy + Delta-G solvation = -2461.403713 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.49530 -38.67917 -36.33123 -34.59670 -33.37631 -31.64908 -30.61654 -27.79084 -25.25810 -23.96579 -23.72485 -21.81199 -19.25710 -17.81974 -17.43438 -17.17257 -16.42384 -16.05062 -15.34257 -15.20732 -14.78386 -14.57162 -14.12038 -14.01380 -13.84410 -13.45121 -13.17960 -13.06236 -12.83286 -12.52520 -12.47711 -12.20871 -11.96873 -11.72142 -11.23798 -11.04904 -10.71479 -10.50654 -10.09753 -9.86832 -8.14412 -6.23236 0.21047 0.50268 1.39377 1.41083 1.50416 1.80029 1.83084 2.42386 2.80666 3.15399 3.20478 3.56012 3.85123 4.11419 4.13779 4.29326 4.33748 4.37044 4.63362 4.74499 4.82536 4.93826 4.99583 5.17640 5.29527 5.34509 5.40559 5.50176 5.64880 5.69729 5.87309 5.91089 6.23603 6.61124 6.90576 7.24132 7.43995 8.96673 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032161 B = 0.008114 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.406773 B = 3449.904866 C = 3625.691486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C 0.084 3.916 4 C 0.259 3.741 5 N -0.491 5.491 6 C 0.068 3.932 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.011 3.989 10 N -0.923 5.923 11 Si 0.948 3.052 12 H -0.265 1.265 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.123 3.877 16 C -0.167 4.167 17 C -0.072 4.072 18 C -0.164 4.164 19 C 0.080 3.920 20 N -0.508 5.508 21 H 0.041 0.959 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.028 0.972 27 H -0.008 1.008 28 H 0.262 0.738 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.172 0.828 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 -3.884 15.760 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 C 0.080 3.920 4 C -0.058 4.058 5 N -0.167 5.167 6 C 0.030 3.970 7 C -0.571 4.571 8 H 0.075 0.925 9 C -0.188 4.188 10 N -0.563 5.563 11 Si 0.773 3.227 12 H -0.190 1.190 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.016 4.016 16 C -0.187 4.187 17 C -0.097 4.097 18 C -0.184 4.184 19 C -0.077 4.077 20 N -0.217 5.217 21 H 0.061 0.939 22 H 0.098 0.902 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.046 0.954 27 H 0.011 0.989 28 H 0.071 0.929 29 H 0.170 0.830 30 H 0.192 0.808 31 H 0.189 0.811 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.794 -3.371 14.811 15.444 hybrid contribution 0.002 -0.207 -0.689 0.719 sum -2.792 -3.578 14.122 14.833 Atomic orbital electron populations 1.21670 0.93858 1.02461 1.01476 1.21542 0.97746 0.90820 1.03287 1.17461 0.80059 0.99104 0.95416 1.29218 0.94952 0.91169 0.90440 1.80987 1.13704 1.10668 1.11356 1.18743 0.96336 0.93547 0.88373 1.21554 1.31274 1.12292 0.91931 0.92466 1.25731 0.95408 0.95655 1.02019 1.70094 1.37908 1.24135 1.24155 0.85710 0.78905 0.78638 0.79419 1.18960 1.21156 1.19939 1.20699 0.96276 0.91041 0.93542 1.22202 1.01556 1.02447 0.92457 1.22007 0.93895 0.94309 0.99504 1.22545 1.00154 0.96632 0.99032 1.23257 0.95662 1.00315 0.88513 1.67446 1.09907 1.08659 1.35645 0.93942 0.90220 0.92726 0.90999 0.89229 0.95380 0.98933 0.92926 0.82992 0.80842 0.81052 0.81314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.30 71.98 0.67 -3.58 16 2 C -0.10 -3.16 4.32 30.60 0.13 -3.03 16 3 C 0.08 3.40 0.36 -54.73 -0.02 3.38 16 4 C 0.26 11.43 12.79 89.44 1.14 12.57 16 5 N -0.49 -22.79 18.54 20.00 0.37 -22.42 16 6 C 0.07 3.52 3.00 29.84 0.09 3.60 16 7 C -0.53 -29.45 7.80 25.60 0.20 -29.25 16 8 H 0.06 3.09 6.39 -2.91 -0.02 3.07 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.92 -55.72 13.29 21.44 0.28 -55.44 16 11 Si 0.95 44.77 29.54 68.60 2.03 46.80 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 14 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 15 C 0.12 4.32 4.43 42.55 0.19 4.51 16 16 C -0.17 -4.28 8.63 22.36 0.19 -4.09 16 17 C -0.07 -1.36 10.18 22.47 0.23 -1.13 16 18 C -0.16 -3.18 10.11 22.36 0.23 -2.95 16 19 C 0.08 2.18 11.18 84.67 0.95 3.12 16 20 N -0.51 -19.06 9.03 -183.88 -1.66 -20.72 16 21 H 0.04 1.61 6.43 -2.39 -0.02 1.60 16 22 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 23 H 0.05 1.56 6.85 -2.39 -0.02 1.54 16 24 H 0.07 2.62 6.62 -2.39 -0.02 2.60 16 25 H 0.09 2.29 6.70 -2.39 -0.02 2.27 16 26 H 0.03 1.52 6.43 -2.39 -0.02 1.51 16 27 H -0.01 -0.46 7.85 -2.39 -0.02 -0.48 16 28 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.15 3.20 6.73 -2.91 -0.02 3.18 16 30 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -71.24 273.88 6.61 -64.63 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 1.12 Total: 2.92 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 4.46 Total: -15.78 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -1.00 Total: -98.58 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.24 6.61 -64.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039117490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.544 kcal (2) G-P(sol) polarization free energy of solvation -71.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds