Wall clock time and date at job start Mon Mar 30 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99427 * 2 1 4 4 C 1.39671 * 120.00306 * 179.97438 * 2 1 3 5 5 C 1.38910 * 120.07598 * 359.97438 * 4 2 1 6 6 C 1.38098 * 119.92750 * 179.97438 * 5 4 2 7 7 C 1.38285 * 120.07423 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.92621 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47545 * 0.02562 * 8 7 6 10 10 C 1.47200 * 109.47516 * 240.00289 * 8 7 6 11 11 N 6.98711 * 128.35375 * 157.14712 * 2 1 3 12 12 C 1.50706 * 109.47259 * 120.00101 * 8 7 6 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 8 7 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 8 7 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 8 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 8 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.38294 * 120.14973 * 0.27193 * 7 6 5 21 21 C 1.38099 * 120.07024 * 359.45258 * 20 7 6 22 22 H 1.09000 * 109.47611 * 269.99878 * 1 2 3 23 23 H 1.08996 * 109.47367 * 30.00593 * 1 2 3 24 24 H 1.09000 * 109.46612 * 150.00078 * 1 2 3 25 25 H 1.09002 * 109.46901 * 269.99156 * 3 2 1 26 26 H 1.09001 * 109.47599 * 29.99686 * 3 2 1 27 27 H 1.09002 * 109.46748 * 149.99887 * 3 2 1 28 28 H 1.08007 * 120.03490 * 359.96165 * 5 4 2 29 29 H 1.08000 * 119.96345 * 180.02562 * 6 5 4 30 30 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 31 31 H 1.07995 * 119.96241 * 179.70379 * 20 7 6 32 32 H 1.08002 * 120.03646 * 180.27543 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2095 0.0005 5 6 1.4705 -2.4135 0.0016 6 6 2.1642 -3.6076 0.0016 7 6 3.5470 -3.6058 0.0011 8 6 4.3006 -4.9108 0.0017 9 1 3.5924 -5.7394 0.0020 10 6 5.1473 -4.9880 1.2033 11 7 5.8006 -5.0492 2.1280 12 6 5.1666 -4.9914 -1.2291 13 1 5.1711 -4.1786 -1.9404 14 6 5.9530 -6.1027 -1.4471 15 7 5.9471 -7.0926 -0.5813 16 14 7.0258 -6.2028 -2.9730 17 1 7.7685 -7.4888 -2.9724 18 1 6.1713 -6.1247 -4.1850 19 1 7.9912 -5.0743 -2.9744 20 6 4.2400 -2.4090 0.0062 21 6 3.5526 -1.2113 0.0005 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5138 25 1 2.3792 1.5834 -1.0277 26 1 1.6083 2.0285 0.5138 27 1 3.1498 1.1385 0.5139 28 1 0.3905 -2.4156 0.0027 29 1 1.6261 -4.5440 0.0020 30 1 5.3897 -7.0407 0.2109 31 1 5.3200 -2.4111 0.0106 32 1 4.0943 -0.2770 0.0000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041209881.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:06 Heat of formation + Delta-G solvation = 52.645145 kcal Electronic energy + Delta-G solvation = -15124.068899 eV Core-core repulsion = 12663.520993 eV Total energy + Delta-G solvation = -2460.547906 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.31273 -36.77360 -35.19766 -33.20503 -30.82707 -30.73328 -28.06307 -27.28272 -24.31111 -23.13099 -21.86204 -20.14713 -17.63636 -17.24961 -16.02299 -15.48371 -14.98713 -14.44213 -14.04975 -13.82228 -13.38781 -13.18275 -12.78107 -12.66805 -12.24594 -12.21023 -11.88421 -11.85758 -11.64124 -11.26047 -10.90070 -10.77201 -10.34080 -10.17003 -9.98928 -9.46474 -8.76787 -8.58295 -8.38900 -6.91298 -6.51372 -4.34659 1.96864 2.11933 3.28261 3.39362 3.41174 3.59997 4.10047 4.15939 4.37747 4.48458 5.00644 5.05867 5.15880 5.22612 5.38886 5.43199 5.57945 5.65530 5.67344 5.70212 5.89048 5.99583 6.13559 6.21282 6.52468 6.62545 6.85977 7.00625 7.29653 7.45935 7.47762 7.76571 7.83441 8.22977 8.60018 8.96747 9.38771 10.81684 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034493 B = 0.006467 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.565190 B = 4328.885767 C = 4568.802699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.646 5.646 3 C 0.098 3.902 4 C 0.194 3.806 5 C -0.198 4.198 6 C -0.073 4.073 7 C -0.088 4.088 8 C 0.153 3.847 9 H 0.065 0.935 10 C 0.242 3.758 11 N -0.506 5.506 12 C -0.591 4.591 13 H 0.069 0.931 14 C 0.023 3.977 15 N -0.891 5.891 16 Si 1.073 2.927 17 H -0.281 1.281 18 H -0.283 1.283 19 H -0.286 1.286 20 C -0.056 4.056 21 C -0.197 4.197 22 H 0.042 0.958 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.271 0.729 31 H 0.121 0.879 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 13.302 -1.768 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.360 5.360 3 C -0.046 4.046 4 C 0.095 3.905 5 C -0.220 4.220 6 C -0.092 4.092 7 C -0.091 4.091 8 C 0.131 3.869 9 H 0.083 0.917 10 C -0.074 4.074 11 N -0.185 5.185 12 C -0.629 4.629 13 H 0.087 0.913 14 C -0.184 4.184 15 N -0.525 5.525 16 Si 0.900 3.100 17 H -0.206 1.206 18 H -0.209 1.209 19 H -0.212 1.212 20 C -0.075 4.075 21 C -0.219 4.219 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.629 12.385 -1.154 15.139 hybrid contribution -1.320 1.052 0.415 1.738 sum -9.948 13.437 -0.739 16.735 Atomic orbital electron populations 1.21525 0.80163 1.02213 1.00609 1.46157 1.04512 1.03125 1.82243 1.21534 0.97230 0.85082 1.00720 1.17725 0.91159 0.85313 0.96316 1.20521 0.98892 0.91110 1.11445 1.20807 0.93531 0.97095 0.97762 1.19587 0.92910 0.94771 1.01820 1.15725 0.91852 0.92355 0.86939 0.91729 1.30536 0.93131 0.90878 0.92821 1.80810 1.12487 1.10825 1.14329 1.21798 1.28497 1.07414 1.05232 0.91293 1.26041 0.97332 0.92086 1.02924 1.70823 1.38239 1.32346 1.11123 0.83472 0.75956 0.76406 0.74200 1.20630 1.20895 1.21190 1.20831 0.99865 0.91128 0.95647 1.20605 0.91909 0.98284 1.11074 0.93991 0.92174 0.91379 0.93859 0.92194 0.91425 0.86648 0.86210 0.91761 0.86116 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 10.19 59.85 0.61 1.57 16 2 N -0.65 -8.19 3.41 -187.55 -0.64 -8.83 16 3 C 0.10 0.99 10.19 59.85 0.61 1.60 16 4 C 0.19 3.05 6.55 -83.79 -0.55 2.50 16 5 C -0.20 -3.11 9.21 -39.38 -0.36 -3.47 16 6 C -0.07 -1.30 9.66 -39.62 -0.38 -1.68 16 7 C -0.09 -1.80 4.71 -104.59 -0.49 -2.30 16 8 C 0.15 3.63 2.08 -95.71 -0.20 3.44 16 9 H 0.07 1.53 7.74 -51.93 -0.40 1.13 16 10 C 0.24 6.19 12.07 -20.83 -0.25 5.94 16 11 N -0.51 -13.52 18.52 42.07 0.78 -12.74 16 12 C -0.59 -15.36 8.22 -34.44 -0.28 -15.64 16 13 H 0.07 1.76 7.61 -52.48 -0.40 1.36 16 14 C 0.02 0.62 5.30 -17.82 -0.09 0.53 16 15 N -0.89 -26.06 13.38 55.43 0.74 -25.32 16 16 Si 1.07 24.09 29.90 -169.99 -5.08 19.00 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 19 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.06 -1.10 8.80 -39.61 -0.35 -1.44 16 21 C -0.20 -3.30 9.21 -39.38 -0.36 -3.67 16 22 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 24 H 0.07 0.65 6.20 -51.93 -0.32 0.33 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 27 H 0.07 0.70 6.20 -51.93 -0.32 0.37 16 28 H 0.12 1.51 6.15 -52.48 -0.32 1.19 16 29 H 0.12 1.91 7.94 -52.49 -0.42 1.49 16 30 H 0.27 7.94 6.04 -40.82 -0.25 7.69 16 31 H 0.12 2.46 8.03 -52.49 -0.42 2.04 16 32 H 0.12 1.67 6.14 -52.49 -0.32 1.35 16 LS Contribution 277.18 15.07 4.18 4.18 Total: -1.00 -30.92 277.18 -5.78 -36.70 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.65 Total: -0.35 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.11 Total: -12.63 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.88 Total: -46.89 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.08 Total: 19.00 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.92 -5.78 -36.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041209881.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.345 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds