Wall clock time and date at job start Mon Mar 30 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99427 * 2 1 4 4 C 1.39671 * 120.00306 * 179.97438 * 2 1 3 5 5 C 1.38910 * 120.07598 * 359.97438 * 4 2 1 6 6 C 1.38098 * 119.92750 * 179.97438 * 5 4 2 7 7 C 1.38285 * 120.07423 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.92621 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47545 * 0.02562 * 8 7 6 10 10 C 1.47200 * 109.47516 * 240.00289 * 8 7 6 11 11 N 6.98711 * 128.35375 * 157.14712 * 2 1 3 12 12 C 1.50706 * 109.47259 * 120.00101 * 8 7 6 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 8 7 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 8 7 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 8 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 8 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.38294 * 120.14973 * 0.27193 * 7 6 5 21 21 C 1.38099 * 120.07024 * 359.45258 * 20 7 6 22 22 H 1.09000 * 109.47611 * 269.99878 * 1 2 3 23 23 H 1.08996 * 109.47367 * 30.00593 * 1 2 3 24 24 H 1.09000 * 109.46612 * 150.00078 * 1 2 3 25 25 H 1.09002 * 109.46901 * 269.99156 * 3 2 1 26 26 H 1.09001 * 109.47599 * 29.99686 * 3 2 1 27 27 H 1.09002 * 109.46748 * 149.99887 * 3 2 1 28 28 H 1.08007 * 120.03490 * 359.96165 * 5 4 2 29 29 H 1.08000 * 119.96345 * 180.02562 * 6 5 4 30 30 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 31 31 H 1.07995 * 119.96241 * 179.70379 * 20 7 6 32 32 H 1.08002 * 120.03646 * 180.27543 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2095 0.0005 5 6 1.4705 -2.4135 0.0016 6 6 2.1642 -3.6076 0.0016 7 6 3.5470 -3.6058 0.0011 8 6 4.3006 -4.9108 0.0017 9 1 3.5924 -5.7394 0.0020 10 6 5.1473 -4.9880 1.2033 11 7 5.8006 -5.0492 2.1280 12 6 5.1666 -4.9914 -1.2291 13 1 5.1711 -4.1786 -1.9404 14 6 5.9530 -6.1027 -1.4471 15 7 5.9471 -7.0926 -0.5813 16 14 7.0258 -6.2028 -2.9730 17 1 7.7685 -7.4888 -2.9724 18 1 6.1713 -6.1247 -4.1850 19 1 7.9912 -5.0743 -2.9744 20 6 4.2400 -2.4090 0.0062 21 6 3.5526 -1.2113 0.0005 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5138 25 1 2.3792 1.5834 -1.0277 26 1 1.6083 2.0285 0.5138 27 1 3.1498 1.1385 0.5139 28 1 0.3905 -2.4156 0.0027 29 1 1.6261 -4.5440 0.0020 30 1 5.3897 -7.0407 0.2109 31 1 5.3200 -2.4111 0.0106 32 1 4.0943 -0.2770 0.0000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041209881.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:06 Heat of formation + Delta-G solvation = 35.145700 kcal Electronic energy + Delta-G solvation = -15124.827732 eV Core-core repulsion = 12663.520993 eV Total energy + Delta-G solvation = -2461.306739 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61468 -38.32669 -36.78045 -35.19417 -32.43782 -32.00183 -28.94604 -28.77684 -25.96585 -24.62704 -23.18091 -21.43274 -19.67020 -18.52559 -17.60219 -16.77275 -15.93556 -15.84742 -15.62689 -15.46623 -14.97376 -14.44259 -14.29317 -14.07312 -13.81450 -13.35034 -13.28864 -13.17186 -12.89722 -12.78524 -12.73951 -12.51316 -11.94441 -11.77304 -11.58278 -10.97947 -10.62526 -10.42195 -9.73744 -8.71742 -8.01942 -6.48484 0.62484 0.73877 1.58079 1.64374 1.83898 2.07415 2.13293 2.33716 2.58541 2.96073 3.16797 3.79792 4.00163 4.12620 4.28236 4.34283 4.46253 4.57934 4.66285 4.68840 4.83181 4.89240 4.93830 4.95449 5.04680 5.27747 5.42950 5.59353 5.73366 5.99079 6.01588 6.14535 6.45208 6.46148 6.63948 6.93529 7.32406 8.67695 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034493 B = 0.006467 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.565190 B = 4328.885767 C = 4568.802699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.646 5.646 3 C 0.090 3.910 4 C 0.201 3.799 5 C -0.195 4.195 6 C -0.074 4.074 7 C -0.121 4.121 8 C 0.151 3.849 9 H 0.062 0.938 10 C 0.251 3.749 11 N -0.535 5.535 12 C -0.589 4.589 13 H 0.070 0.930 14 C -0.026 4.026 15 N -0.925 5.925 16 Si 1.114 2.886 17 H -0.289 1.289 18 H -0.258 1.258 19 H -0.274 1.274 20 C -0.072 4.072 21 C -0.202 4.202 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.147 0.853 29 H 0.133 0.867 30 H 0.257 0.743 31 H 0.100 0.900 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.397 15.526 -2.776 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.359 5.359 3 C -0.053 4.053 4 C 0.100 3.900 5 C -0.217 4.217 6 C -0.093 4.093 7 C -0.125 4.125 8 C 0.130 3.870 9 H 0.080 0.920 10 C -0.064 4.064 11 N -0.214 5.214 12 C -0.627 4.627 13 H 0.089 0.911 14 C -0.225 4.225 15 N -0.561 5.561 16 Si 0.935 3.065 17 H -0.214 1.214 18 H -0.182 1.182 19 H -0.200 1.200 20 C -0.090 4.090 21 C -0.224 4.224 22 H 0.070 0.930 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.164 0.836 29 H 0.150 0.850 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.468 14.666 -2.162 18.148 hybrid contribution -0.892 0.532 0.759 1.286 sum -11.360 15.198 -1.402 19.026 Atomic orbital electron populations 1.21768 0.78187 1.03617 1.01653 1.46498 1.05926 1.02751 1.80713 1.21740 0.97407 0.84527 1.01605 1.17888 0.90965 0.86796 0.94394 1.20805 1.00379 0.90267 1.10295 1.20966 0.92444 0.98722 0.97153 1.19387 0.94023 0.93234 1.05814 1.15789 0.91499 0.94402 0.85332 0.92045 1.30968 0.92721 0.89850 0.92883 1.80774 1.13263 1.12073 1.15280 1.22101 1.28036 1.06876 1.05724 0.91142 1.27386 0.98457 0.91897 1.04810 1.70949 1.39603 1.33770 1.11746 0.82960 0.75067 0.76260 0.72166 1.21433 1.18244 1.19989 1.20731 0.99011 0.92167 0.97141 1.20730 0.92793 0.97922 1.10953 0.93024 0.89717 0.91147 0.93018 0.89572 0.91910 0.83577 0.84957 0.93186 0.88224 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 10.19 127.77 1.30 2.66 16 2 N -0.65 -13.98 3.41 -747.27 -2.55 -16.52 16 3 C 0.09 1.49 10.19 127.77 1.30 2.79 16 4 C 0.20 5.80 6.55 38.21 0.25 6.05 16 5 C -0.20 -5.64 9.21 22.40 0.21 -5.43 16 6 C -0.07 -2.55 9.66 22.25 0.21 -2.33 16 7 C -0.12 -5.01 4.71 -19.84 -0.09 -5.11 16 8 C 0.15 7.37 2.08 -14.09 -0.03 7.35 16 9 H 0.06 3.01 7.74 -2.39 -0.02 2.99 16 10 C 0.25 13.23 12.07 89.47 1.08 14.31 16 11 N -0.53 -29.42 18.52 19.98 0.37 -29.05 16 12 C -0.59 -31.03 8.22 25.60 0.21 -30.82 16 13 H 0.07 3.62 7.61 -2.91 -0.02 3.60 16 14 C -0.03 -1.40 5.30 84.65 0.45 -0.95 16 15 N -0.92 -55.33 13.38 21.45 0.29 -55.05 16 16 Si 1.11 48.37 29.90 68.60 2.05 50.43 16 17 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 C -0.07 -2.82 8.80 22.25 0.20 -2.63 16 21 C -0.20 -6.51 9.21 22.40 0.21 -6.30 16 22 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.08 0.90 8.07 -2.39 -0.02 0.88 16 24 H 0.07 1.05 6.20 -2.39 -0.01 1.03 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.09 1.00 8.07 -2.39 -0.02 0.98 16 27 H 0.06 1.11 6.20 -2.39 -0.01 1.10 16 28 H 0.15 3.26 6.15 -2.91 -0.02 3.24 16 29 H 0.13 4.07 7.94 -2.91 -0.02 4.05 16 30 H 0.26 15.63 6.04 -92.71 -0.56 15.07 16 31 H 0.10 4.22 8.03 -2.91 -0.02 4.20 16 32 H 0.13 3.68 6.14 -2.91 -0.02 3.66 16 Total: -1.00 -67.20 277.18 6.79 -60.42 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.33 Total: 10.19 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 5.29 Total: -20.41 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -1.89 Total: -100.62 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.05 Total: 50.43 kcal Total: -67.20 6.79 -60.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041209881.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.564 kcal (2) G-P(sol) polarization free energy of solvation -67.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds